-
1
-
-
77953796587
-
Phenex: ontological annotation of phenotypic diversity
-
2864769, 20463926.
-
Balhoff JP, Dahdul WM, Kothari CR, Lapp H, Lundberg JG, Mabee P, Midford PE, Westerfield M, Vision TJ. Phenex: ontological annotation of phenotypic diversity. PLoS One 2010, 5:e10500. 10.1371/journal.pone.0010500, 2864769, 20463926.
-
(2010)
PLoS One
, vol.5
-
-
Balhoff, J.P.1
Dahdul, W.M.2
Kothari, C.R.3
Lapp, H.4
Lundberg, J.G.5
Mabee, P.6
Midford, P.E.7
Westerfield, M.8
Vision, T.J.9
-
3
-
-
77349112447
-
Integrating phenotype ontologies across multiple species
-
2847714, 20064205.
-
Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M. Integrating phenotype ontologies across multiple species. Genome Biol 2010, 11:R2. 10.1186/gb-2010-11-1-r2, 2847714, 20064205.
-
(2010)
Genome Biol
, vol.11
-
-
Mungall, C.J.1
Gkoutos, G.V.2
Smith, C.L.3
Haendel, M.A.4
Lewis, S.E.5
Ashburner, M.6
-
4
-
-
84907005580
-
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes
-
4177199, 24267744.
-
Midford P, Dececchi T, Balhoff J, Dahdul W, Ibrahim N, Lapp H, Lundberg J, Mabee P, Sereno P, Westerfield M, Vision T, Blackburn D. The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J Biomed Semantics 2013, 4:34. 10.1186/2041-1480-4-34, 4177199, 24267744.
-
(2013)
J Biomed Semantics
, vol.4
, pp. 34
-
-
Midford, P.1
Dececchi, T.2
Balhoff, J.3
Dahdul, W.4
Ibrahim, N.5
Lapp, H.6
Lundberg, J.7
Mabee, P.8
Sereno, P.9
Westerfield, M.10
Vision, T.11
Blackburn, D.12
-
5
-
-
84862498268
-
NeXML: rich, extensible, and verifiable representation of comparative data and metadata
-
3376374, 22357728.
-
Vos RA, Balhoff JP, Caravas JA, Holder MT, Lapp H, Maddison WP, Midford PE, Priyam A, Sukumaran J, Xia X, Stoltzfus A. NeXML: rich, extensible, and verifiable representation of comparative data and metadata. Syst Biol 2012, 61:675-689. 10.1093/sysbio/sys025, 3376374, 22357728.
-
(2012)
Syst Biol
, vol.61
, pp. 675-689
-
-
Vos, R.A.1
Balhoff, J.P.2
Caravas, J.A.3
Holder, M.T.4
Lapp, H.5
Maddison, W.P.6
Midford, P.E.7
Priyam, A.8
Sukumaran, J.9
Xia, X.10
Stoltzfus, A.11
-
6
-
-
84927919713
-
-
Phenoscape Project.
-
Phenoscape Project. [http://phenoscape.org/].
-
-
-
-
7
-
-
84861306656
-
500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton
-
3377363, 22736877.
-
Mabee PM, Balhoff JP, Dahdul WM, Lapp H, Midford PE, Vision TJ, Westerfield M. 500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton. J Appl Ichthyol 2012, 28:300-305. 10.1111/j.1439-0426.2012.01985.x, 3377363, 22736877.
-
(2012)
J Appl Ichthyol
, vol.28
, pp. 300-305
-
-
Mabee, P.M.1
Balhoff, J.P.2
Dahdul, W.M.3
Lapp, H.4
Midford, P.E.5
Vision, T.J.6
Westerfield, M.7
-
8
-
-
77956229224
-
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature
-
2873956, 20505755.
-
Dahdul WM, Balhoff JP, Engeman J, Grande T, Hilton EJ, Kothari C, Lapp H, Lundberg JG, Midford PE, Vision TJ, Westerfield M, Mabee PM. Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature. PLoS One 2010, 5:e10708. 10.1371/journal.pone.0010708, 2873956, 20505755.
-
(2010)
PLoS One
, vol.5
-
-
Dahdul, W.M.1
Balhoff, J.P.2
Engeman, J.3
Grande, T.4
Hilton, E.J.5
Kothari, C.6
Lapp, H.7
Lundberg, J.G.8
Midford, P.E.9
Vision, T.J.10
Westerfield, M.11
Mabee, P.M.12
-
9
-
-
84927918283
-
NCBO BioPortal API documentation
-
NCBO BioPortal API documentation. [http://data.bioontology.org/documentation].
-
-
-
-
10
-
-
84927921204
-
-
Apache Subversion
-
Apache Subversion. [http://subversion.apache.org/].
-
-
-
-
11
-
-
84927919006
-
-
Dropbox
-
Dropbox. [https://www.dropbox.com/].
-
-
-
-
12
-
-
34548595489
-
OBO-Edit-an ontology editor for biologists
-
17545183.
-
Day-Richter J, Harris MA, Haendel M, Lewis S,. Gene Ontology OBO-Edit Working Group OBO-Edit-an ontology editor for biologists. Bioinformatics 2007, 23:2198-2200. 10.1093/bioinformatics/btm112, 17545183, Gene Ontology OBO-Edit Working Group.
-
(2007)
Bioinformatics
, vol.23
, pp. 2198-2200
-
-
Day-Richter, J.1
Harris, M.A.2
Haendel, M.3
Lewis, S.4
-
13
-
-
79959988943
-
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
-
3125807, 21672956.
-
Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T, Musen MA. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res 2011, 39(Web Server issue):W541-W545. 3125807, 21672956.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.Web Server issue
, pp. W541-W545
-
-
Whetzel, P.L.1
Noy, N.F.2
Shah, N.H.3
Alexander, P.R.4
Nyulas, C.5
Tudorache, T.6
Musen, M.A.7
-
14
-
-
84927947536
-
-
Phenoscape ORB Manager
-
Phenoscape ORB Manager. [https://github.com/phenoscape/orb-manager].
-
-
-
-
17
-
-
84927914886
-
-
Jpathwatch
-
jpathwatch. [http://jpathwatch.wordpress.com].
-
-
-
-
18
-
-
20844433631
-
Using ontologies to describe mouse phenotypes
-
549069, 15642100.
-
Gkoutos GV, Green ECJ, Mallon A-M, Hancock JM, Davidson D. Using ontologies to describe mouse phenotypes. Genome Biol 2005, 6:R8. 10.1186/gb-2005-6-5-p8, 549069, 15642100.
-
(2005)
Genome Biol
, vol.6
-
-
Gkoutos, G.V.1
Green, E.C.J.2
Mallon, A.-M.3
Hancock, J.M.4
Davidson, D.5
-
19
-
-
84927936349
-
NeuroCommons ontological term broker
-
NeuroCommons ontological term broker. [http://neurocommons.org/page/Ontological_term_broker].
-
-
-
-
20
-
-
84927934742
-
-
WebProtege
-
WebProtege. [http://protegewiki.stanford.edu/wiki/WebProtege].
-
-
-
|