-
2
-
-
33947368247
-
An environment for relation mining over richly annotated corpora: the case of GENIA
-
Rinaldi F., Schneider G., Kaljurand K., Hess M., Romacker M. An environment for relation mining over richly annotated corpora: the case of GENIA. BMC Bioinformatics 2006, 7(Suppl. 3):S3.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. S3
-
-
Rinaldi, F.1
Schneider, G.2
Kaljurand, K.3
Hess, M.4
Romacker, M.5
-
3
-
-
33846482093
-
Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach
-
Rinaldi F., Schneider G., Kaljurand K., Hess M., Andronis C., Konstandi O., et al. Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach. Artif Intell Med 2007 February, 39(2):127-136.
-
(2007)
Artif Intell Med
, vol.39
, Issue.2
, pp. 127-136
-
-
Rinaldi, F.1
Schneider, G.2
Kaljurand, K.3
Hess, M.4
Andronis, C.5
Konstandi, O.6
-
4
-
-
84864998804
-
Combining active learning and semi-supervised learning techniques to extract protein interaction sentences
-
Song M., Yu H., Han W.S. Combining active learning and semi-supervised learning techniques to extract protein interaction sentences. BMC Bioinformatics 2011, 12(Suppl. 12):S4.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S4
-
-
Song, M.1
Yu, H.2
Han, W.S.3
-
5
-
-
1842559914
-
Extracting human protein interactions from MEDLINE using a full-sentence parser
-
March 22
-
Daraselia N., Yuryev A., Egorov S., Novichkova S., Nikitin A., Mazo I. Extracting human protein interactions from MEDLINE using a full-sentence parser. Bioinformatics 2004, 20(5):604-611. March 22.
-
(2004)
Bioinformatics
, vol.20
, Issue.5
, pp. 604-611
-
-
Daraselia, N.1
Yuryev, A.2
Egorov, S.3
Novichkova, S.4
Nikitin, A.5
Mazo, I.6
-
6
-
-
77950542062
-
Extracting causal relations on HIV drug resistance from literature
-
Bui Q.-C., Nuallain B., Boucher C., Sloot P. Extracting causal relations on HIV drug resistance from literature. BMC Bioinformatics 2010, 11(1):101.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
, pp. 101
-
-
Bui, Q.-C.1
Nuallain, B.2
Boucher, C.3
Sloot, P.4
-
7
-
-
84865971332
-
Relation mining experiments in the pharmacogenomics domain
-
October
-
Rinaldi F., Schneider G., Clematide S. Relation mining experiments in the pharmacogenomics domain. J Biomed Inform 2012, 45(5):851-861. October.
-
(2012)
J Biomed Inform
, vol.45
, Issue.5
, pp. 851-861
-
-
Rinaldi, F.1
Schneider, G.2
Clematide, S.3
-
10
-
-
34249852033
-
Building a large annotated corpus of English: the Penn treebank
-
Marcus M.P., Marcinkiewicz M.A., Santorini B. Building a large annotated corpus of English: the Penn treebank. Comput Linguist 1993, 19(2):313-330.
-
(1993)
Comput Linguist
, vol.19
, Issue.2
, pp. 313-330
-
-
Marcus, M.P.1
Marcinkiewicz, M.A.2
Santorini, B.3
-
11
-
-
0036706501
-
Two biomedical sublanguages: a description based on the theories of Zellig Harris
-
August
-
Friedman C., Kra P., Rzhetsky A. Two biomedical sublanguages: a description based on the theories of Zellig Harris. J Biomed Inform 2002, 35(4):222-235. August.
-
(2002)
J Biomed Inform
, vol.35
, Issue.4
, pp. 222-235
-
-
Friedman, C.1
Kra, P.2
Rzhetsky, A.3
-
12
-
-
70349454090
-
Porting a lexicalized-grammar parser to the biomedical domain
-
October
-
Rimell L., Clark S. Porting a lexicalized-grammar parser to the biomedical domain. J Biomed Inform 2009, 42(5):852-865. October.
-
(2009)
J Biomed Inform
, vol.42
, Issue.5
, pp. 852-865
-
-
Rimell, L.1
Clark, S.2
-
13
-
-
16544394385
-
Adding a medical lexicon to an English Parser
-
Szolovits P. Adding a medical lexicon to an English Parser. In: AMIA annu symp proc; 2003. p. 639-43.
-
(2003)
AMIA annu symp proc
, pp. 639-643
-
-
Szolovits, P.1
-
14
-
-
33847636986
-
Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches
-
Pyysalo S., Salakoski T., Aubin S., Nazarenko A. Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches. BMC Bioinformatics 2006, 7(Suppl. 3):S2.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. S2
-
-
Pyysalo, S.1
Salakoski, T.2
Aubin, S.3
Nazarenko, A.4
-
16
-
-
33847095048
-
Benchmarking natural-language parsers for biological applications using dependency graphs
-
Clegg A., Shepherd A. Benchmarking natural-language parsers for biological applications using dependency graphs. BMC Bioinformatics 2007, 8(1):24.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 24
-
-
Clegg, A.1
Shepherd, A.2
-
17
-
-
84859905757
-
Self-training for biomedical parsing. In: Proceedings of the 46th annual meeting of the association for computational linguistics on human language technologies: short papers
-
Columbus, Ohio
-
McClosky D, Charniak E. Self-training for biomedical parsing. In: Proceedings of the 46th annual meeting of the association for computational linguistics on human language technologies: short papers; Columbus, Ohio; 2008. p. 101-4.
-
(2008)
, pp. 101-104
-
-
McClosky, D.1
Charniak, E.2
-
23
-
-
18044384608
-
Improved identification of noun phrases in clinical radiology reports using a high-performance statistical natural language parser augmented with the UMLS specialist lexicon
-
Huang Y., Lowe H.J., Klein D., Cucina R.J. Improved identification of noun phrases in clinical radiology reports using a high-performance statistical natural language parser augmented with the UMLS specialist lexicon. J Am Med Inform Assoc 2005, 12(3):275-285.
-
(2005)
J Am Med Inform Assoc
, vol.12
, Issue.3
, pp. 275-285
-
-
Huang, Y.1
Lowe, H.J.2
Klein, D.3
Cucina, R.J.4
-
24
-
-
84858956811
-
Augmenting a Deep Natural Language Processing System with UMLS
-
(SMBM 2010); Hinxton, UK; October .
-
Swift M, Blaylock N, Allen J, Beaumont Wd, Galescu L, Jung H. Augmenting a Deep Natural Language Processing System with UMLS. In: Proceedings of the fourth international symposium on semantic mining in biomedicine (SMBM 2010); Hinxton, UK; October 2010.
-
(2010)
Proceedings of the fourth international symposium on semantic mining in biomedicine
-
-
Swift, M.1
Blaylock, N.2
Allen, J.3
Beaumont, W.4
Galescu, L.5
Jung, H.6
-
27
-
-
84927921259
-
-
SPECIALIST Lexicon. Available from: [accessed 14.01.15].
-
SPECIALIST Lexicon. Available from: [accessed 14.01.15]. http://www.nlm.nih.gov/pubs/factsheets/umlslex.html.
-
-
-
-
30
-
-
4043082208
-
Head-driven statistical models for natural language parsing
-
Collins M. Head-driven statistical models for natural language parsing. Comput Linguist 2003, 29(4):589-637.
-
(2003)
Comput Linguist
, vol.29
, Issue.4
, pp. 589-637
-
-
Collins, M.1
-
31
-
-
33646407289
-
Discriminative reranking for natural language parsing
-
Collins M., Koo T. Discriminative reranking for natural language parsing. Comput Linguist 2005, 31(1):25-70.
-
(2005)
Comput Linguist
, vol.31
, Issue.1
, pp. 25-70
-
-
Collins, M.1
Koo, T.2
-
33
-
-
84862912300
-
An initial study of full parsing of clinical text using the Stanford Parser
-
12-15 November; 2011
-
Hua X, AbdelRahman S, Min J, Jung-wei F, Yang H. An initial study of full parsing of clinical text using the Stanford Parser. In: Proceedings of the 2011 IEEE international conference on bioinformatics and biomedicine workshops, 2011 12-15 November; 2011. p. 607-14.
-
(2011)
Proceedings of the 2011 IEEE international conference on bioinformatics and biomedicine workshops
, pp. 607-614
-
-
Hua, X.1
AbdelRahman, S.2
Min, J.3
Jung-wei, F.4
Yang, H.5
-
34
-
-
27744563098
-
MAP adaptation of stochastic grammars
-
Bacchiani M., Riley M., Roark B., Sproat R. MAP adaptation of stochastic grammars. Comput Speech Lang 2006, 20(1):41-68.
-
(2006)
Comput Speech Lang
, vol.20
, Issue.1
, pp. 41-68
-
-
Bacchiani, M.1
Riley, M.2
Roark, B.3
Sproat, R.4
-
35
-
-
84927939171
-
-
Genia treebank. Available from: [accessed 14.01.15].
-
Genia treebank. Available from: [accessed 14.01.15]. http://www.nactem.ac.uk/genia/genia-corpus/treebank.
-
-
-
-
36
-
-
84880769903
-
A study of actions in operative notes
-
Wang Y, Pakhomov S, Burkart NE, Ryan JO, Melton GB. A study of actions in operative notes. AMIA Annu Symp Proc, 2012; 2012. p. 1431-40.
-
(2012)
AMIA Annu Symp Proc
, vol.2012
, pp. 1431-1440
-
-
Wang, Y.1
Pakhomov, S.2
Burkart, N.E.3
Ryan, J.O.4
Melton, G.B.5
-
38
-
-
84927916224
-
-
Penn Treebank II Bracketing Guide. Available from: [accessed 14.01.15].
-
Penn Treebank II Bracketing Guide; 1995. Available from: [accessed 14.01.15].
-
(1995)
-
-
-
39
-
-
0040044719
-
Procedure for quantitatively comparing the syntactic coverage of English grammars
-
Abney S, Flickenger S, Gdaniec C, Grishman C, Harrison P, Hindle D, et al. Procedure for quantitatively comparing the syntactic coverage of English grammars. In: Proceedings of the workshop on Speech and Natural Language 1991. p. 306-11.
-
(1991)
Proceedings of the workshop on Speech and Natural Language
, pp. 306-311
-
-
Abney, S.1
Flickenger, S.2
Gdaniec, C.3
Grishman, C.4
Harrison, P.5
Hindle, D.6
-
41
-
-
84927926503
-
-
editors. Subdomain adaptation of a POS tagger with a small corpus
-
Miller JE, Torii M, Vijay-Shanker K, editors. Subdomain adaptation of a POS tagger with a small corpus. In: Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing; 2006.
-
(2006)
Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
-
-
Miller, J.E.1
Torii, M.2
Vijay-Shanker, K.3
-
42
-
-
84927937839
-
-
BioMedICUS. Available from: [accessed 14.01.15].
-
BioMedICUS. Available from: [accessed 14.01.15]. https://bitbucket.org/nlpie/biomedicus.
-
-
-
-
43
-
-
84927915800
-
Any domain parsing: automatic domain adaptation for natural language parsing.
-
McClosky D. Any domain parsing: automatic domain adaptation for natural language parsing. Brown University; 2010.
-
(2010)
Brown University
-
-
McClosky, D.1
-
44
-
-
84872551784
-
The MiPACQ clinical question answering system
-
Cairns BL, Nielsen RD, Masanz JJ, Martin JH, Palmer MS, Ward WH, et al. The MiPACQ clinical question answering system. AMIA Annu Symp Proc, 2011; 2011. p. 171-80.
-
(2011)
AMIA Annu Symp Proc
, vol.2011
, pp. 171-180
-
-
Cairns, B.L.1
Nielsen, R.D.2
Masanz, J.J.3
Martin, J.H.4
Palmer, M.S.5
Ward, W.H.6
|