A new fungal isolate, Penidiella sp. strain T9, accumulates the rare earth element dysprosium

Applied and Environmental Microbiology

Volumn 81, Issue 9, 2015, Pages 3062-3068

  Horiike, Takumi ^a   Yamashita, Mitsuo ^a  

^a SHIBAURA INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CELL MEMBRANES; DYSPROSIUM COMPOUNDS; ENERGY DISPERSIVE SPECTROSCOPY; HEAVY METALS; HETEROJUNCTIONS; METAL RECOVERY; MICROBIOLOGY; MICROORGANISMS; RARE EARTH ELEMENTS; RARE EARTHS; RNA; SCANNING ELECTRON MICROSCOPY; X RAY SPECTROSCOPY;

ACIDIC CONDITIONS; ELEMENTAL MAPPING; ENERGY DISPERSIVE X RAY SPECTROSCOPY; ENVIRONMENTAL SAMPLE; FUNGAL ISOLATES; INDUSTRIAL LIQUID WASTES; MORPHOLOGICAL CHARACTERIZATION; RARE EARTH ELEMENTS (REES);

DYSPROSIUM;

FUNGUS; GEOACCUMULATION; GROWTH RATE; MINE DRAINAGE; RARE EARTH ELEMENT; SAMPLING; SCANNING ELECTRON MICROSCOPY; X-RAY SPECTROSCOPY;

CULTURE MEDIUM; DYSPROSIUM; FUNGAL DNA; RIBOSOME DNA; RNA 28S;

ASCOMYCETES; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; CULTURE MEDIUM; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PH; PHYLOGENY; SCANNING ELECTRON MICROSCOPY; SPECTROMETRY;

ASCOMYCOTA; CLUSTER ANALYSIS; CULTURE MEDIA; DNA, FUNGAL; DNA, RIBOSOMAL; DYSPROSIUM; HYDROGEN-ION CONCENTRATION; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 28S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECTROMETRY, X-RAY EMISSION;

EID: 84927800894     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00300-15     Document Type: Article

References (31)

1. Adachi G, Imanaka N. 1998. The binary rare earth oxides. Chem Rev 98:1479-1514. http://dx.doi.org/10.1021/cr940055h.
2. Elbaz-Poulichet F, Dupuy C. 1999. Behaviour of rare earth elements at the freshwater-seawater interface of two acid mine rivers: the Tinto and Odiel (Andalucia, Spain). Appl Geochem 14:1063-1072. http://dx.doi.org/10.1016/S0883-2927(99)00007-4.
3. Protano G, Riccobono F. 2002. High contents of rare earth elements (REEs) in stream waters of a Cu-Pb-Zn mining area. Environ Pollut 117: 499-514. http://dx.doi.org/10.1016/S0269-7491(01)00173-7.
4. Gadd GM. 2010. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology 156:609-643. http://dx.doi.org/10.1099/mic.0.037143-0.
5. Ahluwalia SS, Goyal D. 2007. Microbial and plant derived biomass for removal of heavy metals from wastewater. Bioresour Technol 98:2243-2257. http://dx.doi.org/10.1016/j.biortech.2005.12.006.
6. Vijayaraghavan K, Yun YS. 2008. Bacterial biosorbents and biosorption. Biotechnol Adv 26:266-291. http://dx.doi.org/10.1016/j.biotechadv.2008.02.002.
7. Mullen MD, Wolf DC, Ferris FG, Beveridge TJ, Flemming CA, Bailey GW. 1989. Bacterial sorption of heavy metals. Appl Environ Microbiol 55:3143-3149.
8. Texier AC, Andrés Y, Le Cloirec P. 1999. Selective biosorption of lanthanide (La, Eu, Yb) ions by Pseudomonas aeruginosa. Environ Sci Technol 33:489-495. http://dx.doi.org/10.1021/es9807744.
9. Takahashi Y, Châtellier X, Hattori K, Kato K, Fortin D. 2005. Adsorption of rare earth elements onto bacterial cell walls and its implication for REE sorption onto natural microbial mats. Chem Geol 219:53-67. http://dx.doi.org/10.1016/j.chemgeo.2005.02.009.
10. Tsuruta T. 2007. Accumulation of rare earth elements in various microorganisms. J Rare Earths 25:526-532. http://dx.doi.org/10.1016/S1002-0721(07)60556-0.
11. Kornerup A, Wanscher JH. 1978. Methuen handbook of colour, 3rd ed. Eyre Methuen, London, United Kingdom.
12. Marmur J. 1961. A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3:208-218. http://dx.doi.org/10.1016/S0022-2836(61)80047-8.
13. Kurtzman CP, Robnett CJ. 1997. Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5' end of the large-subunit (26S) ribosomalDNAgene. J Clin Microbiol 35:1216-1223.
14. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410. http://dx.doi.org/10.1016/S0022-2836(05)80360-2.
15. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739. http://dx.doi.org/10.1093/molbev/msr121.
16. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
17. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791. http://dx.doi.org/10.2307/2408678.
18. Tamura K, Nei M, Kumar S. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 101:11030-11035. http://dx.doi.org/10.1073/pnas.0404206101.
19. Malik A. 2004. Metal bioremediation through growing cells. Environ Int 30:261-278. http://dx.doi.org/10.1016/j.envint.2003.08.001.
20. Ozaki T, Gillow JB, Kimura T, Ohnuki T, Yoshida Z, Francis AJ. 2004. Sorption behavior of europium(III) and curium(III) on the cell surfaces of microorganisms. Radiochim Acta 92:741-748. http://dx.doi.org/10.1524/ract.92.9.741.55006.
21. Jiang M, Ohnuki T, Kozai N, Tanaka K, Suzuki Y, Sakamoto F, Kamiishi E, Utsunomiya S. 2010. Biological nano-mineralization of Ce phosphate by Saccharomyces cerevisiae. Chem Geol 277:61-69. http://dx.doi.org/10.1016/j.chemgeo.2010.07.010.
22. Jiang M, Ohnuki T, Tanaka K, Kozai N, Kamiishi E, Utsunomiya S. 2012. Post-adsorption process of Yb phosphate nano-particle formation by Saccharomyces cerevisiae. Geochim Cosmochim Acta 93:30-46. http://dx.doi.org/10.1016/j.gca.2012.06.016.
23. Tsuruta T. 2006. Selective accumulation of light or heavy rare earth elements using Gram-positive bacteria. Colloids Surf B 52:117-122. http://dx.doi.org/10.1016/j.colsurfb.2006.04.014.
24. Takahashi Y, Hirata T, Shimizu H, Ozaki T, Fortin D. 2007. A rare earth element signature of bacteria in natural waters? Chem Geol 244:569-583. http://dx.doi.org/10.1016/j.chemgeo.2007.07.005.
25. Takahashi Y, Yamamoto M, Yamamoto Y, Tanaka K. 2010. EXAFS study on the cause of enrichment of heavy REEs on bacterial cell surfaces. Geochim Cosmochim Acta 74:5443-5462. http://dx.doi.org/10.1016/j.gca.2010.07.001.
26. Crous PW, Braun U, Groenewald JZ. 2007. Mycosphaerella is polyphyletic. Stud Mycol 58:1-32. http://dx.doi.org/10.3114/sim.2007.58.01.
27. Yamazaki A, Toyama K, Nakagiri A. 2010. A new acidophilic fungus Teratosphaeria acidotherma (Capnodiales, Ascomycota) from a hot spring. Mycoscience 51:443-455. http://dx.doi.org/10.1007/S10267-010-0059-2.
28. Seifert KA, Morgan-Jones G, Gams W, Kendrick B. 2011. The genera of hyphomycetes. CBS-KNAW Fungal Biodiversity Centre, Utrecht, Netherlands.
29. Bensch K, Braun U, Groenewald JZ, Crous PW. 2012. The genus Cladosporium. Stud Mycol 72:1-401. http://dx.doi.org/10.3114/sim0003.
30. Crous PW, Summerell BA, Carnegie AJ, Wingfield MJ, Groenewald JZ. 2009. Novel species of Mycosphaerellaceae and Teratosphaeriaceae. Persoonia 23:119-146. http://dx.doi.org/10.3767/003158509X479531.
31. Ruibal C, Gueidan C, Selbmann L, Gorbushina AA, Crous PW, Groenewald JZ, Muggia L, Grube M, Isola D, Schoch CL, Staley JT, Lutzoni F, De Hoog GS. 2009. Phylogeny of rock-inhabiting fungi related to Dothideomycetes. Stud Mycol 64:123-133. http://dx.doi.org/10.3114/sim.2009.64.06.