Evidence for emergence of sex-determining gene(s) in a centromeric region in vasconcellea parviflora

Genetics

Volumn 199, Issue 2, 2015, Pages 413-421

  Iovene, Marina ^a,b   Yu, Qingyi ^c   Ming, Ray ^d,e   Jiang, Jiming ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b Institute of Biosciences and Bioresources   (Italy)

^c TEXAS A AND M UNIVERSITY   (United States)

^d UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^e FUJIAN AGRICULTURE AND FORESTRY UNIVERSITY   (China)

Author keywords

Centromere; FISH; Heterochromatin; Sex chromosome

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CARICACEAE; FLUORESCENCE IN SITU HYBRIDIZATION; NONHUMAN; PAPAYA; PHYLOGENETIC TREE; PLANT; PRIORITY JOURNAL; SEX CHROMOSOME; SRY GENE; VASCONCELLEA PARVIFLORA; X CHROMOSOME; Y CHROMOSOME; CENTROMERE; CHROMOSOMAL MAPPING; CLASSIFICATION; FLOWER; GENETICS; HETEROCHROMATIN; PHENOTYPE; PHYLOGENY; PLANT CHROMOSOME; PLANT GENE; SEX DIFFERENTIATION;

ANIMALIA; BACTERIA (MICROORGANISMS); CARICA PAPAYA; CARICACEAE; VASCONCELLEA PARVIFLORA;

HETEROCHROMATIN;

CARICACEAE; CENTROMERE; CHROMOSOMES, PLANT; FLOWERS; GENES, PLANT; HETEROCHROMATIN; IN SITU HYBRIDIZATION, FLUORESCENCE; PHENOTYPE; PHYLOGENY; PHYSICAL CHROMOSOME MAPPING; SEX CHROMOSOMES; SEX DIFFERENTIATION;

EID: 84927777053     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.114.173021     Document Type: Article

References (41)

1. Bachtrog, D., 2013 Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration. Nat. Rev. Genet. 14: 113–124.
2. Bellott, D. W., H. Skaletsky, T. Pyntikova, E. R. Mardis, T. Graves et al., 2010 Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition. Nature 466: 612–616.
3. Carvalho, F. A., and S. S. Renner, 2012 A dated phylogeny of the papaya family (Caricaceae) reveals the crop’s closest relatives and the family’s biogeographic history. Mol. Phylogenet. Evol. 65: 46–53.
4. Charlesworth, D., 2013 Plant sex chromosome evolution. J. Exp. Bot. 64: 405–420.
5. Cheng, Z. K., C. R. Buell, R. A. Wing, and J. M. Jiang, 2002 Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers. Chromosome Res. 10: 379–387.
6. Cortez, D., R. Marin, D. Toledo-Flores, L. Froidevaux, A. Liechti et al., 2014 Origins and functional evolution of Y chromosomes across mammals. Nature 508: 488–493.
7. Gong, Z. Y., Y. F. Wu, A. Koblizkova, G. A. Torres, K. Wang et al., 2012 Repeatless and repeat-based centromeres in potato: implications for centromere evolution. Plant Cell 24: 3559–3574.
8. Graves, J. A. M., 2008 Weird animal genomes and the evolution of vertebrate sex and sex chromosomes. Annu. Rev. Genet. 42: 565–586.
9. Hizume, M., H. Shiraishi, and A. Tanaka, 1988 A cytological study of Podocarpus macrophyllus with special reference to sex chromosomes. Jap. J. Genet. 63: 413–423.
10. Howell, E. C., S. J. Armstrong, and D. A. Filatov, 2009 Evolution of neo-sex chromosomes in Silene diclinis. Genetics 182: 1109– 1115.
11. Iovene, M., S. M. Wielgus, P. W. Simon, C. R. Buell, and J. M. Jiang, 2008 Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics 180: 1307–1317.
12. Kumar, S., R. Kumari, and V. Sharma, 2014 Genetics of dioecy and causal sex chromosomes in plants. J. Genet. 93: 241–277.
13. Macas, J., E. Kejnovsky, P. Neumann, P. Novak, A. Koblizkova et al., 2011 Next generation sequencing-based analysis of repetitive DNA in the model dioceous plant Silene latifolia. PLoS ONE 6: e27335.
14. Mariotti, B., S. Manzano, E. Kejnovsky, B. Vyskot, and M. Jamilena, 2009 Accumulation of Y-specific satellite DNAs during the evolution of Rumex acetosa sex chromosomes. Mol. Genet. Genomics 281: 249–259.
15. Matsuda, M., Y. Nagahama, A. Shinomiya, T. Sato, C. Matsuda et al., 2002 DMY is a Y-specific DM-domain gene required for male development in the medaka fish. Nature 417: 559–563.
16. Matsuda, M., A. Shinomiya, M. Kinoshita, A. Suzuki, T. Kobayashi et al., 2007 DMY gene induces male development in genetically female (XX) medaka fish. Proc. Natl. Acad. Sci. USA 104: 3865–3870.
17. Ming, R., A. Bendahmane, and S. S. Renner, 2011 Sex chromosomes in land plants. Annu. Rev. Plant Biol. 62: 485–514.
18. Mrackova, M., M. Nicolas, R. Hobza, I. Negrutiu, F. Moneger et al., 2008 Independent origin of sex chromosomes in two species of the genus Silene. Genetics 179: 1129–1133.
19. Na, J. K., J. P. Wang, J. E. Murray, A. R. Gschwend, W. L. Zhang et al., 2012 Construction of physical maps for the sex-specific regions of papaya sex chromosomes. BMC Genomics 13: 176.
20. Nagaki, K., Z. K. Cheng, S. Ouyang, P. B. Talbert, M. Kim et al., 2004 Sequencing of a rice centromere uncovers active genes. Nat. Genet. 36: 138–145.
21. Navajas-Perez, R., T. Schwarzacher, M. R. Rejon, and M. A. Garrido Ramos, 2009 Molecular cytogenetic characterization of Rumex papillaris, a dioecious plant with an XX/XY1Y2 sex chromosome system. Genetica 135: 87–93.
22. Richards, E. J., and F. M. Ausubel, 1988 Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell 53: 127–136.
23. Sousa, A., J. Fuchs, and S. S. Renner, 2013 Molecular cytogenetics (FISH, GISH) of Coccinia grandis: a ca. 3 myr-old species of Cucurbitaceae with the largest Y/autosome divergence in flowering plants. Cytogenet. Genome Res. 139: 107–118.
24. Takehana, Y., D. Demiyah, K. Naruse, S. Hamaguchi, and M. Sakaizumi, 2007 Evolution of different Y chromosomes in two medaka species, Oryzias dancena and O. latipes. Genetics 175: 1335–1340.
25. Takehana, Y., S. Hamaguchi, and M. Sakaizumi, 2008 Different origins of ZZ/ZW sex chromosomes in closely related medaka fishes, Oryzias javanicus and O. hubbsi. Chromosome Res. 16: 801–811.
26. Tanaka, K., Y. Takehana, K. Naruse, S. Hamaguchi, and M. Sakaizumi, 2007 Evidence for different origins of sex chromosomes in closely related Oryzias fishes: substitution of the master sex-determining gene. Genetics 177: 2075–2081.
27. Telgmann-Rauber, A., A. Jamsari, M. S. Kinney, J. C. Pires, and C. Jung, 2007 Genetic and physical maps around the sex-determining M-locus of the dioecious plant asparagus. Mol. Genet. Genomics 278: 221–234.
28. Vyskot, B., and R. Hobza, 2004 Gender in plants: sex chromosomes are emerging from the fog. Trends Genet. 20: 432–438.
29. Wai, C. M., Q. Y. Yu, P. H. Moore, R. E. Paull, and R. Ming, 2010 Development of chromosome-specific cytogenetic markers and merging of linkage fragments in papaya. Tropical Plant Biol. 3: 171–181.
30. Wai, C. M., P. H. Moore, R. E. Paull, R. Ming, and Q. Y. Yu, 2012 An integrated cytogenetic and physical map reveals unevenly distributed recombination spots along the papaya sex chromosomes. Chromosome Res. 20: 753–767.
31. hchromosomes reveals molecular basis of incipient sex chromosome evolution. Proc. Natl. Acad. Sci. USA 109: 13710–13715.
32. Woram, R. A., K. Gharbi, T. Sakamoto, B. Hoyheim, L. E. Holm et al., 2003 Comparative genome analysis of the primary sexdetermining locus in salmonid fishes. Genome Res. 13: 272–280.
33. Yamamoto, K., Y. Oda, A. Haseda, S. Fujito, T. Mikami et al., 2014 Molecular evidence that the genes for dioecism and monoecism in Spinacia oleracea L. are located at different loci in a chromosomal region. Heredity 112: 317–324.
34. Yamato, K. T., K. Ishizaki, M. Fujisawa, S. Okada, S. Nakayama et al., 2007 Gene organization of the liverwort Y chromosome reveals distinct sex chromosome evolution in a haploid system. Proc. Natl. Acad. Sci. USA 104: 6472–6477.
35. Yan, H. H., W. W. Jin, K. Nagaki, S. Tian, S. Ouyang et al., 2005 Transcription and histone modifications in the recombination-free region spanning a rice centromere. Plant Cell 17: 3227–3238.
36. Yan, H. H., H. Ito, K. Nobuta, S. Ouyang, W. W. Jin et al., 2006 Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. Plant Cell 18: 2123–2133.
37. Yan, H. H., P. B. Talbert, H. R. Lee, J. Jett, S. Henikoff et al., 2008 Intergenic locations of rice centromeric chromatin. PLoS Biol. 6: 2563–2575.
38. Yin, T., S. P. DiFazio, L. E. Gunter, X. Zhang, M. M. Sewell et al., 2008 Genome structure and emerging evidence of an incipient sex chromosome in Populus. Genome Res. 18: 422–430.
39. Yu, Q. Y., S. Hou, F. A. Feltus, M. R. Jones, J. E. Murray et al., 2008 Low X/Y divergence in four pairs of papaya sex-linked genes. Plant J. 53: 124–132.
40. Zhang, W. L., X. U. Wang, Q. Y. Yu, R. Ming, and J. M. Jiang, 2008 DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya. Genome Res. 18: 1938–1943.
41. Zhang, W. L., C. M. Wai, R. Ming, Q. Y. Yu, and J. M. Jiang, 2010 Integration of genetic and cytological maps and development of a pachytene chromosome-based karyotype in papaya. Tropical Plant Biol. 3: 166–170.