메뉴 건너뛰기




Volumn 31, Issue 8, 2015, Pages 1310-1312

Phy-Mer: A novel alignment-free and reference-independent mitochondrial haplogroup classifier

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84927739552     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu825     Document Type: Article
Times cited : (51)

References (15)
  • 1
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • Anderson, S. et al. (1981) Sequence and organization of the human mitochondrial genome. Nature, 290, 457-465.
    • (1981) Nature , vol.290 , pp. 457-465
    • Anderson, S.1
  • 2
    • 0032868141 scopus 로고    scopus 로고
    • Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA
    • Andrews, R. M. et al. (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat. Genet., 23, 147.
    • (1999) Nat. Genet. , vol.23 , pp. 147
    • Andrews, R.M.1
  • 3
    • 84859486099 scopus 로고    scopus 로고
    • A Copernican" reassessment of the human mitochondrial DNA tree from its root
    • Behar, D. M. et al. (2012) A "Copernican" reassessment of the human mitochondrial DNA tree from its root. Am. J. Hum. Genet., 90, 675-684.
    • (2012) Am. J. Hum. Genet. , vol.90 , pp. 675-684
    • Behar, D.M.1
  • 4
    • 37249011343 scopus 로고    scopus 로고
    • Consistent treatment of length variants in the human mtDNA control region: A reappraisal
    • Bandelt, H. J. and Parson, W. (2008) Consistent treatment of length variants in the human mtDNA control region: a reappraisal. Int. J. Legal Med., 122, 11-21.
    • (2008) Int. J. Legal Med. , vol.122 , pp. 11-21
    • Bandelt, H.J.1    Parson, W.2
  • 5
    • 84868122653 scopus 로고    scopus 로고
    • Haplogrouping mitochondrial DNA sequences in Legal Medicine/Forensic Genetics
    • Bandelt, H. J. et al. (2012) Haplogrouping mitochondrial DNA sequences in Legal Medicine/Forensic Genetics. Int. J. Legal Med., 126, 901-916.
    • (2012) Int. J. Legal Med. , vol.126 , pp. 901-916
    • Bandelt, H.J.1
  • 6
    • 77956320468 scopus 로고    scopus 로고
    • Automated alignment and nomenclature for consistent treatment of polymorphisms in the human mitochondrial DNA control region
    • Budowle, B. et al. (2010) Automated alignment and nomenclature for consistent treatment of polymorphisms in the human mitochondrial DNA control region. J. Forensic Sci., 55:1190-1195.
    • (2010) J. Forensic Sci. , vol.55 , pp. 1190-1195
    • Budowle, B.1
  • 7
    • 84911428521 scopus 로고    scopus 로고
    • MToolBox: A highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing
    • Calabrese, C. et al. (2014) MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing. Bioinformatics, 30:3115-3117.
    • (2014) Bioinformatics , vol.30 , pp. 3115-3117
    • Calabrese, C.1
  • 8
    • 70649084983 scopus 로고    scopus 로고
    • The impact of jumping alignments on mtDNA population analysis and database searching
    • Den Hartog, B. K. et al. (2009) The impact of jumping alignments on mtDNA population analysis and database searching. Forensic Sci. Int. : Genet. Suppl. Ser., 2, 315-316.
    • (2009) Forensic Sci. Int. : Genet. Suppl. Ser. , vol.2 , pp. 315-316
    • Den Hartog, B.K.1
  • 9
    • 84891673654 scopus 로고    scopus 로고
    • Mitochondrial disease genetic diagnostics: Optimized whole-exome analysis for all MitoCarta nuclear genes and the mitochondrial genome
    • Falk, M. J. et al. (2012) Mitochondrial disease genetic diagnostics: optimized whole-exome analysis for all MitoCarta nuclear genes and the mitochondrial genome. Discov. Med., 14, 389-399.
    • (2012) Discov. Med. , vol.14 , pp. 389-399
    • Falk, M.J.1
  • 10
    • 84877886388 scopus 로고    scopus 로고
    • An update to MitoTool: Using a new scoring system for faster mtDNA haplogroup determination
    • Fan, L. and Yao, Y. G. (2013) An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13, 360-363.
    • (2013) Mitochondrion , vol.13 , pp. 360-363
    • Fan, L.1    Yao, Y.G.2
  • 11
    • 78650459836 scopus 로고    scopus 로고
    • HaploGrep: A fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups
    • Kloss-Brandstätter A., et al. 2011 HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups. Hum. Mutat.32 25-32.
    • (2011) Hum. Mutat , vol.32 , pp. 25-32
    • Kloss-Brandstätter, A.1
  • 12
    • 84896385812 scopus 로고    scopus 로고
    • MtDNA variation and analysis using MITOMAP and MITOMASTER
    • Lott, M. T., et al. (2013) mtDNA variation and analysis using MITOMAP and MITOMASTER. Curr. Protoc. Bioinformatics, 44: 1. 23. 1-1.
    • (2013) Curr. Protoc. Bioinformatics , vol.44 , pp. 123-211
    • Lott, M.T.1
  • 13
    • 84887081021 scopus 로고    scopus 로고
    • Concept for estimating mitochondrial DNA haplogroups using a maximum likelihood approach (EMMA)
    • Rö ck, A. W. et al. (2013) Concept for estimating mitochondrial DNA haplogroups using a maximum likelihood approach (EMMA). Forensic Sci. Int. Genet., 7, 601-609.
    • (2013) Forensic Sci. Int. Genet. , vol.7 , pp. 601-609
    • Röck, A.W.1
  • 14
    • 64049089255 scopus 로고    scopus 로고
    • Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
    • van Oven, M. and Kayser, M. (2009) Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum. Mutat., 30, E386-E394.
    • (2009) Hum. Mutat. , vol.30 , pp. E386-E394
    • Van Oven, M.1    Kayser, M.2
  • 15
    • 84881612914 scopus 로고    scopus 로고
    • HAPLOFIND: A new method for high-throughput mtDNA haplogroup assignment
    • Vianello, D., et al. (2013) HAPLOFIND: a new method for high-throughput mtDNA haplogroup assignment. Hum. Mutat., 34, 1189-1194.
    • (2013) Hum. Mutat. , vol.34 , pp. 1189-1194
    • Vianello, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.