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Volumn 8401, Issue , 2014, Pages 255-270

Intelligent integrative knowledge bases: Bridging genomics, integrative biology and translational medicine

Author keywords

Biological database; DIKW; HCI KDD; I2KB; Knowledge base; Knowledge discovery; SM2PH; Translational bioinformatics

Indexed keywords

DATA MINING; GENES; INFORMATION MANAGEMENT; KNOWLEDGE BASED SYSTEMS;

EID: 84927599996     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-662-43968-5_15     Document Type: Article
Times cited : (1)

References (65)
  • 1
    • 84864818817 scopus 로고    scopus 로고
    • Revolutionizing medicine in the 21st century through systems approaches
    • Hood, L., Balling, R., Auffray, C.: Revolutionizing medicine in the 21st century through systems approaches. Biotechnol. J. 7, 992-1001 (2012)
    • (2012) Biotechnol. J , vol.7 , pp. 992-1001
    • Hood, L.1    Balling, R.2    Auffray, C.3
  • 3
    • 84864332063 scopus 로고    scopus 로고
    • Deep phenotyping for precision medicine
    • Robinson, P.N.: Deep phenotyping for precision medicine. Hum. Mutat. 33, 777-780 (2012)
    • (2012) Hum. Mutat , vol.33 , pp. 777-780
    • Robinson, P.N.1
  • 5
    • 84867331897 scopus 로고    scopus 로고
    • Systems biology: Personalized medicine for the future
    • Chen, R., Snyder, M.: Systems biology: Personalized medicine for the future? Curr. Opin. Pharmacol. 12, 623-628 (2012)
    • (2012) Curr. Opin. Pharmacol , vol.12 , pp. 623-628
    • Chen, R.1    Snyder, M.2
  • 6
    • 33947379388 scopus 로고    scopus 로고
    • Conceptual Approaches for Defining Data, Information, and Knowledge
    • Zins, C.: Conceptual Approaches for Defining Data, Information, and Knowledge. J. Am. Soc. Inf. Sci. 58, 479-493 (2007)
    • (2007) J. Am. Soc. Inf. Sci , vol.58 , pp. 479-493
    • Zins, C.1
  • 8
    • 84878818474 scopus 로고    scopus 로고
    • KNODWAT: A scientific framework application for testing knowledge discovery methods for the biomedical domain
    • Holzinger, A., Zupan, M.: KNODWAT: A scientific framework application for testing knowledge discovery methods for the biomedical domain. BMC Bioinformatics 14, 191 (2013)
    • (2013) BMC Bioinformatics , vol.14 , pp. 191
    • Holzinger, A.1    Zupan, M.2
  • 11
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • Kitano, H.: Systems biology: A brief overview. Science 295, 1662-1664 (2002)
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 12
    • 79952645848 scopus 로고    scopus 로고
    • Informing biological design by integration of systems and synthetic biology
    • Smolke, C.D., Silver, P.A.: Informing biological design by integration of systems and synthetic biology. Cell 144, 855-859 (2011)
    • (2011) Cell , vol.144 , pp. 855-859
    • Smolke, C.D.1    Silver, P.A.2
  • 16
    • 84864650836 scopus 로고    scopus 로고
    • The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: A structural biology web resource
    • Gifford, L.K., Carter, L.G., Gabanyi, M.J., Berman, H.M., Adams, P.D.: The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource. J. Struct. Funct. Genomics 13, 57-62 (2012)
    • (2012) J. Struct. Funct. Genomics , vol.13 , pp. 57-62
    • Gifford, L.K.1    Carter, L.G.2    Gabanyi, M.J.3    Berman, H.M.4    Adams, P.D.5
  • 18
    • 84855378129 scopus 로고    scopus 로고
    • NEW: Network-enabled wisdom in biology, medicine, and health care
    • 115rv111
    • Schadt, E.E., Bjorkegren, J.L.: NEW: network-enabled wisdom in biology, medicine, and health care. Sci. Transl. Med. 4, 115rv111 (2012)
    • (2012) Sci. Transl. Med , vol.4
    • Schadt, E.E.1    Bjorkegren, J.L.2
  • 19
    • 77956531676 scopus 로고    scopus 로고
    • Knowledge Management: Historical and Cross-Disciplinary Themes
    • Wallace, D.P.: Knowledge Management: Historical and Cross-Disciplinary Themes. Libraries Unlimited (2007)
    • (2007) Libraries Unlimited
    • Wallace, D.P.1
  • 20
    • 49949099664 scopus 로고    scopus 로고
    • Towards a cyberinfrastructure for the biological sciences: Progress, visions and challenges
    • Stein, L.D.: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges. Nat. Rev. Genet. 9, 678-688 (2008)
    • (2008) Nat. Rev. Genet , vol.9 , pp. 678-688
    • Stein, L.D.1
  • 22
    • 79955011056 scopus 로고    scopus 로고
    • An informatics project and online Knowledge Centre supporting modern genotype-to-phenotype research
    • Webb, A.J., Thorisson, G.A., Brookes, A.J.: An informatics project and online Knowledge Centre supporting modern genotype-to-phenotype research. Human Mutation 32, 543-550 (2011)
    • (2011) Human Mutation , vol.32 , pp. 543-550
    • Webb, A.J.1    Thorisson, G.A.2    Brookes, A.J.3
  • 23
    • 0041402772 scopus 로고    scopus 로고
    • What is “Integrative Biology”?
    • Wake, M.H.: What is “Integrative Biology”? Integr. Comp. Biol. 43, 239-241 (2003)
    • (2003) Integr. Comp. Biol , vol.43 , pp. 239-241
    • Wake, M.H.1
  • 25
    • 84885756946 scopus 로고    scopus 로고
    • On Visual Analytics And Evaluation In Cell Physiology: A Case Study
    • In: Cuzzocrea, A., Kittl, C., Simos, D.E., Weippl, E., Xu, L. (eds.), Springer, Heidelberg
    • Jeanquartier, F., Holzinger, A.: On Visual Analytics And Evaluation In Cell Physiology: A Case Study. In: Cuzzocrea, A., Kittl, C., Simos, D.E., Weippl, E., Xu, L. (eds.) CD-ARES 2013. LNCS, vol. 8127, pp. 495-502. Springer, Heidelberg (2013)
    • (2013) CD-ARES 2013. LNCS , vol.8127 , pp. 495-502
    • Jeanquartier, F.1    Holzinger, A.2
  • 27
    • 22844452823 scopus 로고    scopus 로고
    • LOVD: Easy creation of a locus-specific sequence variation database using an LSDB-in-a-box approach
    • Fokkema, I.F., den Dunnen, J.T., Taschner, P.E.: LOVD: Easy creation of a locus-specific sequence variation database using an LSDB-in-a-box approach. Human Mutation 26, 63-68 (2005)
    • (2005) Human Mutation , vol.26 , pp. 63-68
    • Fokkema, I.F.1    Den Dunnen, J.T.2    Taschner, P.E.3
  • 28
    • 0342545408 scopus 로고    scopus 로고
    • UMD (Universal mutation database): A generic software to build and analyze locus-specific databases
    • Beroud, C., Collod-Beroud, G., Boileau, C., Soussi, T., Junien, C.: UMD (Universal mutation database): A generic software to build and analyze locus-specific databases. Human Mutation 15, 86-94 (2000)
    • (2000) Human Mutation , vol.15 , pp. 86-94
    • Beroud, C.1    Collod-Beroud, G.2    Boileau, C.3    Soussi, T.4    Junien, C.5
  • 31
    • 79959988943 scopus 로고    scopus 로고
    • BioPortal: Enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
    • Whetzel, P.L., Noy, N.F., Shah, N.H., Alexander, P.R., Nyulas, C., Tudorache, T., Musen, M.A.: BioPortal: Enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res. 39, W541-W545 (2011)
    • (2011) Nucleic Acids Res , vol.39 , pp. W541-W545
    • Whetzel, P.L.1    Noy, N.F.2    Shah, N.H.3    Alexander, P.R.4    Nyulas, C.5    Tudorache, T.6    Musen, M.A.7
  • 33
    • 84861235431 scopus 로고    scopus 로고
    • Mining electronic health records: Towards better research applications and clinical care
    • Jensen, P.B., Jensen, L.J., Brunak, S.: Mining electronic health records: Towards better research applications and clinical care. Nat. Rev. Genet. 13, 395-405 (2012)
    • (2012) Nat. Rev. Genet , vol.13 , pp. 395-405
    • Jensen, P.B.1    Jensen, L.J.2    Brunak, S.3
  • 34
    • 0002638178 scopus 로고    scopus 로고
    • Inductive logic programming: Issues, results and the challenge of learning language in logic
    • Muggleton, S.: Inductive logic programming: issues, results and the challenge of learning language in logic. Artif. Intell. 114, 283-296 (1999)
    • (1999) Artif. Intell , vol.114 , pp. 283-296
    • Muggleton, S.1
  • 36
    • 84875281241 scopus 로고    scopus 로고
    • Knowledge discovery in variant databases using inductive logic programming
    • Nguyen, H., Luu, T.D., Poch, O., Thompson, J.D.: Knowledge discovery in variant databases using inductive logic programming. Bioinform Biol. Insights 7, 119-131 (2013)
    • (2013) Bioinform Biol. Insights , vol.7 , pp. 119-131
    • Nguyen, H.1    Luu, T.D.2    Poch, O.3    Thompson, J.D.4
  • 38
    • 1842682603 scopus 로고    scopus 로고
    • Applying inductive logic programming to predicting gene function. AI
    • King, R.D.: Applying inductive logic programming to predicting gene function. AI. Mag. 25, 57-68 (2004)
    • (2004) Mag , vol.25 , pp. 57-68
    • King, R.D.1
  • 39
    • 58149464304 scopus 로고    scopus 로고
    • An integrative domain-based approach to predicting proteinprotein interactions
    • Nguyen, T.P., Ho, T.B.: An integrative domain-based approach to predicting proteinprotein interactions. J. Bioinform. Comput. Biol. 6, 1115-1132 (2008)
    • (2008) J. Bioinform. Comput. Biol , vol.6 , pp. 1115-1132
    • Nguyen, T.P.1    Ho, T.B.2
  • 40
    • 78649913479 scopus 로고    scopus 로고
    • Discovering rules for protein-ligand specificity using support vector inductive logic programming
    • Kelley, L.A., Shrimpton, P.J., Muggleton, S.H., Sternberg, M.J.: Discovering rules for protein-ligand specificity using support vector inductive logic programming. Protein Eng. Des. Sel. 22, 561-567 (2009)
    • (2009) Protein Eng. Des. Sel , vol.22 , pp. 561-567
    • Kelley, L.A.1    Shrimpton, P.J.2    Muggleton, S.H.3    Sternberg, M.J.4
  • 41
    • 77952627785 scopus 로고    scopus 로고
    • Microarray data classification using inductive logic programming and gene ontology background information
    • Ryeng, E., Alsberg, B.K.: Microarray data classification using inductive logic programming and gene ontology background information. Journal of Chemometrics 24, 231-240 (2010)
    • (2010) Journal of Chemometrics , vol.24 , pp. 231-240
    • Ryeng, E.1    Alsberg, B.K.2
  • 43
    • 34250658998 scopus 로고    scopus 로고
    • Bayesian methods in bioinformatics and computational systems biology
    • Wilkinson, D.J.: Bayesian methods in bioinformatics and computational systems biology. Brief Bioinform. 8, 109-116 (2007)
    • (2007) Brief Bioinform , vol.8 , pp. 109-116
    • Wilkinson, D.J.1
  • 45
    • 84885807915 scopus 로고    scopus 로고
    • Human-Computer Interaction & Knowledge Discovery (HCI-KDD): What is the benefit of bringing those two fields to work together?
    • In: Cuzzocrea, A., Kittl, C., Simos, D.E., Weippl, E., Xu, L. (eds.), Springer, Heidelberg
    • Holzinger, A.: Human-Computer Interaction & Knowledge Discovery (HCI-KDD): What is the benefit of bringing those two fields to work together? In: Cuzzocrea, A., Kittl, C., Simos, D.E., Weippl, E., Xu, L. (eds.) CD-ARES 2013. LNCS, vol. 8127, pp. 319-328. Springer, Heidelberg (2013)
    • (2013) CD-ARES 2013. LNCS , vol.8127 , pp. 319-328
    • Holzinger, A.1
  • 48
    • 33847043896 scopus 로고    scopus 로고
    • Service-oriented architecture in medical software: Promises and perils
    • Nadkarni, P.M., Miller, R.A.: Service-oriented architecture in medical software: promises and perils. J. Am. Med. Inform. Assoc. 14, 244-246 (2007)
    • (2007) J. Am. Med. Inform. Assoc , vol.14 , pp. 244-246
    • Nadkarni, P.M.1    Miller, R.A.2
  • 51
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar, P., Henikoff, S., Ng, P.C.: Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat. Protoc. 4, 1073-1081 (2009)
    • (2009) Nat. Protoc , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 53
    • 84919694412 scopus 로고    scopus 로고
    • Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology
    • Oellrich, A., Gkoutos, G.V., Hoehndorf, R., Rebholz-Schuhmann, D.: Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. J. Biomed. Semantics 3(suppl. 2), S1 (2012)
    • (2012) J. Biomed. Semantics , vol.3 , pp. S1
    • Oellrich, A.1    Gkoutos, G.V.2    Hoehndorf, R.3    Rebholz-Schuhmann, D.4
  • 55
    • 84864344347 scopus 로고    scopus 로고
    • Identifying disease mutations in genomic medicine settings: Current challenges and how to accelerate progress
    • Lyon, G.J., Wang, K.: Identifying disease mutations in genomic medicine settings: Current challenges and how to accelerate progress. Genome Med. 4, 58 (2012)
    • (2012) Genome Med , vol.4 , pp. 58
    • Lyon, G.J.1    Wang, K.2
  • 61
    • 84863987708 scopus 로고    scopus 로고
    • Computational tools for prioritizing candidate genes: Boosting disease gene discovery
    • Moreau, Y., Tranchevent, L.C.: Computational tools for prioritizing candidate genes: boosting disease gene discovery. Nat. Rev. Genet. 13, 523-536 (2012)
    • (2012) Nat. Rev. Genet , vol.13 , pp. 523-536
    • Moreau, Y.1    Tranchevent, L.C.2
  • 64
    • 84863414669 scopus 로고    scopus 로고
    • EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data
    • Linard, B., Nguyen, N.H., Prosdocimi, F., Poch, O., Thompson, J.D.: EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data. Evol. Bioinform Online. 8, 61-77 (2011)
    • (2011) Evol. Bioinform Online , vol.8 , pp. 61-77
    • Linard, B.1    Nguyen, N.H.2    Prosdocimi, F.3    Poch, O.4    Thompson, J.D.5
  • 65
    • 84879862460 scopus 로고    scopus 로고
    • Biology must develop its own big-data systems
    • Boyle, J.: Biology must develop its own big-data systems. Nature 499, 7 (2013)
    • (2013) Nature , vol.499 , pp. 7
    • Boyle, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.