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Volumn 6, Issue MAR, 2015, Pages

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

Author keywords

Gas chromatography mass spectrometry; Metabolomics; Microbial mats; Polyhydroxyalkanoates; Roseiflexus; Synechococcus; Wax esters

Indexed keywords

ARTICLE; BIOSYNTHESIS; FERMENTATION; GLYCOLYSIS; LIGHT IRRADIANCE; MASS FRAGMENTOGRAPHY; METABOLISM; METABOLOMICS; MUSHROOM; TEMPERATURE;

EID: 84927132155     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.00209     Document Type: Article
Times cited : (79)

References (48)
  • 1
    • 0001451404 scopus 로고
    • Formation and fate of fermentation products in hot spring cyanobacterial mats
    • Anderson, K.L., Tayne, T.A., and Ward, D.M. (1987). Formation and fate of fermentation products in hot spring cyanobacterial mats. Appl. Environ. Microbiol. 53, 2343-2352.
    • (1987) Appl. Environ. Microbiol. , vol.53 , pp. 2343-2352
    • Anderson, K.L.1    Tayne, T.A.2    Ward, D.M.3
  • 2
    • 0000651747 scopus 로고
    • Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat
    • Bateson, M.M., and Ward, D.M. (1988). Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat. Appl. Environ. Microbiol. 54, 1738-1743.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1738-1743
    • Bateson, M.M.1    Ward, D.M.2
  • 3
    • 0001016964 scopus 로고
    • Ecological studies of Chloroflexis, a gliding photosynthetic bacterium
    • Bauld, J., and Brock, T. (1973). Ecological studies of Chloroflexis, a gliding photosynthetic bacterium. Arch. Mikrobiol. 92, 267-284.
    • (1973) Arch. Mikrobiol. , vol.92 , pp. 267-284
    • Bauld, J.1    Brock, T.2
  • 4
    • 77953288480 scopus 로고    scopus 로고
    • Photorespiration: players, partners and origin
    • Bauwe, H., Hagemann, M., and Fernie, A.R. (2010). Photorespiration: players, partners and origin. Trends Plant Sci. 15, 330-336.
    • (2010) Trends Plant Sci. , vol.15 , pp. 330-336
    • Bauwe, H.1    Hagemann, M.2    Fernie, A.R.3
  • 5
    • 83155185388 scopus 로고    scopus 로고
    • Fine-Scale distribution patterns of Synechococcus ecological diversity in microbial mats of Mushroom Spring, Yellowstone National Park
    • Becraft, E.D., Cohan, F.M., Kühl, M., Jensen, S.I., and Ward, D.M. (2011). Fine-Scale distribution patterns of Synechococcus ecological diversity in microbial mats of Mushroom Spring, Yellowstone National Park. Appl. Environ. Microbiol. 77, 7689-7697.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 7689-7697
    • Becraft, E.D.1    Cohan, F.M.2    Kühl, M.3    Jensen, S.I.4    Ward, D.M.5
  • 9
    • 0006058299 scopus 로고    scopus 로고
    • Early days in Yellowstone microbiology
    • Brock, T.D. (1998). Early days in Yellowstone microbiology. ASM News 64, 137-140.
    • (1998) ASM News , vol.64 , pp. 137-140
    • Brock, T.D.1
  • 12
    • 0024219056 scopus 로고
    • Biogeochemistry of hot spring environments: extractable lipids of a cyanobacterial mat
    • Dobson, G., Ward, D.M., Robinson, N., and Eglinton, G. (1988). Biogeochemistry of hot spring environments: extractable lipids of a cyanobacterial mat. Chem. Geol. 68, 155-179.
    • (1988) Chem. Geol. , vol.68 , pp. 155-179
    • Dobson, G.1    Ward, D.M.2    Robinson, N.3    Eglinton, G.4
  • 13
    • 0038558615 scopus 로고    scopus 로고
    • Cyanobacterial ecotypes in different optical microenvironments of a 68°C hot spring mat community revealed by 16S-23S rRNA internal transcribed spacer region variation
    • Ferris, M.J., Kühl, M., Wieland, A., and Ward, D.M. (2003). Cyanobacterial ecotypes in different optical microenvironments of a 68°C hot spring mat community revealed by 16S-23S rRNA internal transcribed spacer region variation. Appl. Environ. Microbiol. 69, 2893-2898.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2893-2898
    • Ferris, M.J.1    Kühl, M.2    Wieland, A.3    Ward, D.M.4
  • 14
    • 84857885821 scopus 로고    scopus 로고
    • Identification of the bacteriochlorophylls, carotenoids, quinones, lipids, and hopanoids of "Candidatus Chloracidobacterium thermophilum"
    • Garcia Costas, A.M., Tsukatani, Y., Rijpstra, W.I.C., Schouten, S., Welander, P.V., Summons, R.E., and Bryant, D.A. (2012). Identification of the bacteriochlorophylls, carotenoids, quinones, lipids, and hopanoids of "Candidatus Chloracidobacterium thermophilum". J. Bacteriol. 194, 1158-1168.
    • (2012) J. Bacteriol. , vol.194 , pp. 1158-1168
    • Garcia Costas, A.M.1    Tsukatani, Y.2    Rijpstra, W.I.C.3    Schouten, S.4    Welander, P.V.5    Summons, R.E.6    Bryant, D.A.7
  • 15
    • 78650625847 scopus 로고    scopus 로고
    • Alternative pathways for phosphonate metabolism in thermophilic cyanobacteria from microbial mats
    • Gomez-Garcia, M.R., Davison, M., Blain-Hartnung, M., Grossman, A.R., and Bhaya, D. (2011). Alternative pathways for phosphonate metabolism in thermophilic cyanobacteria from microbial mats. ISME J. 5, 141-149.
    • (2011) ISME J. , vol.5 , pp. 141-149
    • Gomez-Garcia, M.R.1    Davison, M.2    Blain-Hartnung, M.3    Grossman, A.R.4    Bhaya, D.5
  • 16
    • 0036156093 scopus 로고    scopus 로고
    • Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes
    • Hanada, S., Takaichi, S., Matsuura, K., and Nakamura, K. (2002). Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes. Int. J. Syst. Evol. Microbiol. 52, 187-193.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 187-193
    • Hanada, S.1    Takaichi, S.2    Matsuura, K.3    Nakamura, K.4
  • 17
    • 66149088821 scopus 로고    scopus 로고
    • MetaboliteDetector: comprehensive analysis tool for targeted and nontargeted GC/MS based metabolome analysis
    • Hiller, K., Hangebrauk, J., JäGer, C., Spura, J., Schreiber, K., and Schomburg, D. (2009). MetaboliteDetector: comprehensive analysis tool for targeted and nontargeted GC/MS based metabolome analysis. Anal. Chem. 81, 3429-3439.
    • (2009) Anal. Chem. , vol.81 , pp. 3429-3439
    • Hiller, K.1    Hangebrauk, J.2    JäGer, C.3    Spura, J.4    Schreiber, K.5    Schomburg, D.6
  • 18
    • 33644822529 scopus 로고    scopus 로고
    • On the energetics of chemolithotrophy in nonequilibrium systems: case studies of geothermal springs in Yellowstone National Park
    • Inskeep, W.P., Ackerman, G.G., Taylor, W.P., Kozubal, M., Korf, S., and Macur, R.E. (2005). On the energetics of chemolithotrophy in nonequilibrium systems: case studies of geothermal springs in Yellowstone National Park. Geobiology 3, 297-317.
    • (2005) Geobiology , vol.3 , pp. 297-317
    • Inskeep, W.P.1    Ackerman, G.G.2    Taylor, W.P.3    Kozubal, M.4    Korf, S.5    Macur, R.E.6
  • 19
    • 78751572898 scopus 로고    scopus 로고
    • In situ dynamics of O2, pH and cyanobacterial transcripts associated with CCM, photosynthesis and detoxification of ROS
    • Jensen, S.I., Steunou, A.-S., Bhaya, D., Kuhl, M., and Grossman, A.R. (2011). In situ dynamics of O2, pH and cyanobacterial transcripts associated with CCM, photosynthesis and detoxification of ROS. ISME J. 5, 317-328.
    • (2011) ISME J. , vol.5 , pp. 317-328
    • Jensen, S.I.1    Steunou, A.-S.2    Bhaya, D.3    Kuhl, M.4    Grossman, A.R.5
  • 21
    • 72449186517 scopus 로고    scopus 로고
    • FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of flight gas chromatography/mass spectrometry
    • Kind, T., Wohlgemuth, G., Lee, D.Y., Lu, Y., Palazoglu, M., Shahbaz, S., and Fiehn, O. (2009). FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of flight gas chromatography/mass spectrometry. Anal. Chem. 81, 10038-10048.
    • (2009) Anal. Chem. , vol.81 , pp. 10038-10048
    • Kind, T.1    Wohlgemuth, G.2    Lee, D.Y.3    Lu, Y.4    Palazoglu, M.5    Shahbaz, S.6    Fiehn, O.7
  • 22
    • 34447321098 scopus 로고    scopus 로고
    • Comparative genomics provides evidence for the 3- hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats
    • Klatt, C.G., Bryant, D.A., and Ward, D.M. (2007). Comparative genomics provides evidence for the 3- hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats. Environ. Microbiol. 9, 2067-2078.
    • (2007) Environ. Microbiol. , vol.9 , pp. 2067-2078
    • Klatt, C.G.1    Bryant, D.A.2    Ward, D.M.3
  • 23
    • 84883152244 scopus 로고    scopus 로고
    • Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring
    • Klatt, C.G., Liu, Z., Ludwig, M., Kuhl, M., Jensen, S.I., Bryant, D.A., and Ward, D.M. (2013). Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring. ISME J. 7, 1775-1789.
    • (2013) ISME J. , vol.7 , pp. 1775-1789
    • Klatt, C.G.1    Liu, Z.2    Ludwig, M.3    Kuhl, M.4    Jensen, S.I.5    Bryant, D.A.6    Ward, D.M.7
  • 25
    • 80051704393 scopus 로고    scopus 로고
    • Quantitative metabolomics based on gas chromatography mass spectrometry: status and perspectives
    • Koek, M., Jellema, R., Greef, J., Tas, A., and Hankemeier, T. (2011). Quantitative metabolomics based on gas chromatography mass spectrometry: status and perspectives. Metabolomics 7, 307-328.
    • (2011) Metabolomics , vol.7 , pp. 307-328
    • Koek, M.1    Jellema, R.2    Greef, J.3    Tas, A.4    Hankemeier, T.5
  • 26
    • 0026458643 scopus 로고
    • Accumulation and utilization of polysaccharide by hot-spring phototrophs during a light-dark transition
    • Konopka, A. (1992). Accumulation and utilization of polysaccharide by hot-spring phototrophs during a light-dark transition. FEMS Microbiol. Lett. 102, 27-32.
    • (1992) FEMS Microbiol. Lett. , vol.102 , pp. 27-32
    • Konopka, A.1
  • 27
    • 0000780695 scopus 로고
    • Formation of polyesters by Pseudomonas oleovorans: effect of substrates on formation and composition of poly-(R)-3-hydroxyalkanoates and poly-(R)-3-hydroxyalkenoates
    • Lageveen, R.G., Huisman, G.W., Preusting, H., Ketelaar, P., Eggink, G., and Witholt, B. (1988). Formation of polyesters by Pseudomonas oleovorans: effect of substrates on formation and composition of poly-(R)-3-hydroxyalkanoates and poly-(R)-3-hydroxyalkenoates. Appl. Environ. Microbiol. 54, 2924-2932.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2924-2932
    • Lageveen, R.G.1    Huisman, G.W.2    Preusting, H.3    Ketelaar, P.4    Eggink, G.5    Witholt, B.6
  • 28
    • 84867747979 scopus 로고    scopus 로고
    • `Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics
    • Liu, Z., Klatt, C.G., Ludwig, M., Rusch, D.B., Jensen, S.I., Kuhl, M., Ward, D.M., and Bryant, D.A. (2012). `Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics. ISME J. 6, 1869-1882.
    • (2012) ISME J. , vol.6 , pp. 1869-1882
    • Liu, Z.1    Klatt, C.G.2    Ludwig, M.3    Rusch, D.B.4    Jensen, S.I.5    Kuhl, M.6    Ward, D.M.7    Bryant, D.A.8
  • 30
    • 0016797960 scopus 로고
    • Photosynthetic sulfide oxidation by Chloroflexus aurantiacus, a filamentous, photosynthetic, gliding bacterium
    • Madigan, M.T., and Brock, T.D. (1975). Photosynthetic sulfide oxidation by Chloroflexus aurantiacus, a filamentous, photosynthetic, gliding bacterium. J. Bacteriol. 122, 782-784.
    • (1975) J. Bacteriol. , vol.122 , pp. 782-784
    • Madigan, M.T.1    Brock, T.D.2
  • 31
    • 79953186115 scopus 로고    scopus 로고
    • Influence of molecular resolution on sequence-based discovery of ecological diversity among Synechococcus populations in an alkaline siliceous hot spring microbial mat
    • Melendrez, M.C., Lange, R.K., Cohan, F.M., and Ward, D.M. (2011). Influence of molecular resolution on sequence-based discovery of ecological diversity among Synechococcus populations in an alkaline siliceous hot spring microbial mat. Appl. Environ. Microbiol. 77, 1359-1367.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 1359-1367
    • Melendrez, M.C.1    Lange, R.K.2    Cohan, F.M.3    Ward, D.M.4
  • 32
    • 84880077929 scopus 로고    scopus 로고
    • Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics
    • Mosier, A.C., Justice, N.B., Bowen, B.P., Baran, R., Thomas, B.C., Northen, T.R., and Banfield, J.F. (2013). Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. mBio 4, e00484-12.
    • (2013) mBio , vol.4
    • Mosier, A.C.1    Justice, N.B.2    Bowen, B.P.3    Baran, R.4    Thomas, B.C.5    Northen, T.R.6    Banfield, J.F.7
  • 33
    • 0029908371 scopus 로고    scopus 로고
    • Photosynthate partitioning and fermentation in hot spring microbial mat communities
    • Nold, S.C., and Ward, D.M. (1996). Photosynthate partitioning and fermentation in hot spring microbial mat communities. Appl. Environ. Microbiol. 62, 4598-4607.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4598-4607
    • Nold, S.C.1    Ward, D.M.2
  • 35
    • 0034009094 scopus 로고    scopus 로고
    • Highly ordered vertical structure of Synechococcus populations within the one-millimeter-thick photic zone of a hot spring cyanobacterial mat
    • Ramsing, N.B., Ferris, M.J., and Ward, D.M. (2000). Highly ordered vertical structure of Synechococcus populations within the one-millimeter-thick photic zone of a hot spring cyanobacterial mat. Appl. Environ. Microbiol. 66, 1038-1049.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1038-1049
    • Ramsing, N.B.1    Ferris, M.J.2    Ward, D.M.3
  • 36
    • 0001030739 scopus 로고
    • Microelectrode studies of interstitial water chemistry and photosynthetic activity in a hot spring microbial mat
    • Revsbech, N.P., and Ward, D.M. (1984). Microelectrode studies of interstitial water chemistry and photosynthetic activity in a hot spring microbial mat. Appl. Environ. Microbiol. 48, 270-275.
    • (1984) Appl. Environ. Microbiol. , vol.48 , pp. 270-275
    • Revsbech, N.P.1    Ward, D.M.2
  • 37
    • 0000793839 scopus 로고
    • Fate of immediate methane precursors in low-sulfate, hot-spring algal-bacterial mats
    • Sandbeck, K.A., and Ward, D.M. (1981). Fate of immediate methane precursors in low-sulfate, hot-spring algal-bacterial mats. Appl. Environ. Microbiol. 41, 775-782.
    • (1981) Appl. Environ. Microbiol. , vol.41 , pp. 775-782
    • Sandbeck, K.A.1    Ward, D.M.2
  • 41
    • 33846103833 scopus 로고    scopus 로고
    • Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA)
    • Van Der Meer, M.T., Schouten, S., Damste, J.S., and Ward, D.M. (2007). Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA). Environ. Microbiol. 9, 482-491.
    • (2007) Environ. Microbiol. , vol.9 , pp. 482-491
    • Van Der Meer, M.T.1    Schouten, S.2    Damste, J.S.3    Ward, D.M.4
  • 42
    • 77953994723 scopus 로고    scopus 로고
    • Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats
    • Van Der Meer, M.T.J., Klatt, C.G., Wood, J., Bryant, D.A., Bateson, M.M., Lammerts, L., Schouten, S., Sinninghe Damsté, J.S., Madigan, M.T., and Ward, D.M. (2010). Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats. J. Bacteriol. 192, 3033-3042.
    • (2010) J. Bacteriol. , vol.192 , pp. 3033-3042
    • Van Der Meer, M.T.J.1    Klatt, C.G.2    Wood, J.3    Bryant, D.A.4    Bateson, M.M.5    Lammerts, L.6    Schouten, S.7    Sinninghe Damsté, J.S.8    Madigan, M.T.9    Ward, D.M.10
  • 44
    • 0017977960 scopus 로고
    • Thermophilic methanogenesis in a hot-spring algal-bacterial mat (71 to 30 degrees C)
    • Ward, D.M. (1978). Thermophilic methanogenesis in a hot-spring algal-bacterial mat (71 to 30 degrees C). Appl. Environ. Microbiol. 35, 1019-1026.
    • (1978) Appl. Environ. Microbiol. , vol.35 , pp. 1019-1026
    • Ward, D.M.1
  • 45
    • 33751210106 scopus 로고    scopus 로고
    • Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function
    • Ward, D.M., Bateson, M.M., Ferris, M.J., Kühl, M., Wieland, A., Koeppel, A., and Cohan, F.M. (2006). Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 361, 1997-2008.
    • (2006) Philos. Trans. R. Soc. Lond. B: Biol. Sci. , vol.361 , pp. 1997-2008
    • Ward, D.M.1    Bateson, M.M.2    Ferris, M.J.3    Kühl, M.4    Wieland, A.5    Koeppel, A.6    Cohan, F.M.7
  • 46
    • 84874737527 scopus 로고    scopus 로고
    • Cyanobacteria in Geothermal Habitats
    • ed. B.A. Whitton. Springer Netherlands
    • Ward, D.M., Castenholz, R.W., and Miller, S.R. (2012). "Cyanobacteria in Geothermal Habitats," in Ecology of Cyanobacteria II, ed. B.A. Whitton. Springer Netherlands), 39-63.
    • (2012) Ecology of Cyanobacteria II , pp. 39-63
    • Ward, D.M.1    Castenholz, R.W.2    Miller, S.R.3
  • 47
    • 84884973167 scopus 로고    scopus 로고
    • Metabolomics approaches for characterizing metabolic interactions between host and its commensal microbes
    • Xie, G., Zhang, S., Zheng, X., and Jia, W. (2013). Metabolomics approaches for characterizing metabolic interactions between host and its commensal microbes. Electrophoresis 34, 2787-2798.
    • (2013) Electrophoresis , vol.34 , pp. 2787-2798
    • Xie, G.1    Zhang, S.2    Zheng, X.3    Jia, W.4
  • 48
    • 0027071167 scopus 로고
    • Biogeochemistry of hot-spring environments. 3. Apolar and polar lipids in the biologically-active layers of a cyanobacterial mat
    • Zeng, Y.B., Ward, D.M., Brassell, S.C., and Eglinton, G. (1992). Biogeochemistry of hot-spring environments. 3. Apolar and polar lipids in the biologically-active layers of a cyanobacterial mat. Chem. Geol. 95, 347-360.
    • (1992) Chem. Geol. , vol.95 , pp. 347-360
    • Zeng, Y.B.1    Ward, D.M.2    Brassell, S.C.3    Eglinton, G.4


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