-
1
-
-
80955168000
-
Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany
-
PMID: 21696328
-
Frank C, Werber D, Cramer JP, Askar M, Faber M, an der Heiden M, et al. Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany. N Engl J Med. 2011; 365: 1771-1780. doi: 10.1056/NEJMoa1106483 PMID: 21696328
-
(2011)
N Engl J Med.
, vol.365
, pp. 1771-1780
-
-
Frank, C.1
Werber, D.2
Cramer, J.P.3
Askar, M.4
Faber, M.5
An Der Heiden, M.6
-
2
-
-
79960270116
-
Outbreak of haemolytic uraemic syndrome and bloody diarrhoea due to Escherichia coli O104:H4
-
south-west France, June 2011 Jun 30 PMID: 21749817
-
Gault G, Weill FX, Mariani-Kurkdjian P, Jourdan-da Silva N, King L, Aldabe B, et al. Outbreak of haemolytic uraemic syndrome and bloody diarrhoea due to Escherichia coli O104:H4, south-west France, June 2011. Euro Surveill. 2011 Jun 30. 16(26). pii: 19905. PMID: 21749817
-
(2011)
Euro Surveill
, vol.16
, Issue.26
, pp. 19905
-
-
Gault, G.1
Weill, F.X.2
Mariani-Kurkdjian, P.3
Jourdan-da Silva, N.4
King, L.5
Aldabe, B.6
-
3
-
-
80053233574
-
Escherichia coli O104:H4 southwest France
-
June 2011. PMID: 21958580
-
Mariani-Kurkdjian P, Bingen E, Gault G, Jourdan-Da Silva N, Weill FX. Escherichia coli O104:H4 southwest France, June 2011. Lancet Infect Dis. 2011; 11: 732-733. doi: 10.1016/S1473-3099(11)70266-3 PMID: 21958580
-
(2011)
Lancet Infect Dis.
, vol.11
, pp. 732-733
-
-
Mariani-Kurkdjian, P.1
Bingen, E.2
Gault, G.3
Jourdan-Da Silva, N.4
Weill, F.X.5
-
5
-
-
80051804184
-
Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: A microbiological study
-
PMID: 21703928
-
Bielaszewska M, Mellmann A, Zhang W, Köck R, Fruth A, Bauwens A, et al. Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study. Lancet Infect Dis. 2011; 11(9): 671-676. doi: 10.1016/S1473-3099(11)70165-7 PMID: 21703928
-
(2011)
Lancet Infect Dis.
, vol.11
, Issue.9
, pp. 671-676
-
-
Bielaszewska, M.1
Mellmann, A.2
Zhang, W.3
Köck, R.4
Fruth, A.5
Bauwens, A.6
-
6
-
-
84892626525
-
Characteristics of the enteroaggregative Shiga toxin/verotoxin-producing Escherichia coli O104:H4 strain causing the outbreak of haemolytic uraemic syndrome in Germany
-
May to June 2011 Jun 16. pii: PMID: 21699770
-
Scheutz F, Møller Nielsen E, Frimodt-Møller J, Boisen N, Morabito S, Tozzoli R, et al. Characteristics of the enteroaggregative Shiga toxin/verotoxin-producing Escherichia coli O104:H4 strain causing the outbreak of haemolytic uraemic syndrome in Germany, May to June 2011. Euro Surveill. 2011 Jun 16. 16(24). pii: 19889. PMID: 21699770
-
(2011)
Euro Surveill
, vol.16
, Issue.24
, pp. 19889
-
-
Scheutz, F.1
Møller Nielsen, E.2
Frimodt-Møller, J.3
Boisen, N.4
Morabito, S.5
Tozzoli, R.6
-
7
-
-
79960609901
-
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
-
PMID: 21799941
-
Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, et al. Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS One. 2011; 6: e22751. doi: 10.1371/journal.pone.0022751 PMID: 21799941
-
(2011)
PLoS One.
, vol.6
, pp. e22751
-
-
Mellmann, A.1
Harmsen, D.2
Cummings, C.A.3
Zentz, E.B.4
Leopold, S.R.5
Rico, A.6
-
8
-
-
80052173621
-
Open-source genomic analysis of Shiga-toxin-producing E. Coli O104:H4
-
PMID: 21793736
-
Rohde H, Qin J, Cui Y, Li D, Loman NJ, Hentschke M, et al. Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med. 2011; 365: 718-724. doi: 10.1056/NEJMoa1107643 PMID: 21793736
-
(2011)
N Engl J Med.
, vol.365
, pp. 718-724
-
-
Rohde, H.1
Qin, J.2
Cui, Y.3
Li, D.4
Loman, N.J.5
Hentschke, M.6
-
9
-
-
84863348885
-
Genomic data from Escherichia coli O104:H4 isolate TY-2482
-
Accessed 2015 Feb 24
-
Li D, Xi F, Zhao M, Chen W, Cao S, et al. Genomic data from Escherichia coli O104:H4 isolate TY-2482. BGI Shenzhen. 2011. Available: doi: 10.5524/100001. Accessed 2015 Feb 24.
-
(2011)
BGI Shenzhen
-
-
Li, D.1
Xi, F.2
Zhao, M.3
Chen, W.4
Cao, S.5
-
10
-
-
80052150179
-
Origins of the E. Coli Strain Causing an Outbreak of Hemolytic-Uremic Syndrome in Germany
-
PMID: 21793740
-
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, et al. Origins of the E. coli Strain Causing an Outbreak of Hemolytic-Uremic Syndrome in Germany. N Engl J Med. 2011; 365: 709-717. doi: 10.1056/NEJMoa1106920 PMID: 21793740
-
(2011)
N Engl J Med.
, vol.365
, pp. 709-717
-
-
Rasko, D.A.1
Webster, D.R.2
Sahl, J.W.3
Bashir, A.4
Boisen, N.5
Scheutz, F.6
-
11
-
-
82355173436
-
Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)
-
PMID: 21713444
-
Brzuszkiewicz E, Thurmer A, Schuldes J, Leimbach A, Liesegang H, Meyer FD, et al. Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC). Arch Microbiol. 2011; 193: 883-891. doi: 10.1007/s00203-011-0725-6 PMID: 21713444
-
(2011)
Arch Microbiol.
, vol.193
, pp. 883-891
-
-
Brzuszkiewicz, E.1
Thurmer, A.2
Schuldes, J.3
Leimbach, A.4
Liesegang, H.5
Meyer, F.D.6
-
12
-
-
84922445068
-
-
Bakteriologische Untersuchungen im Rahmen des Ausbruchs Mit E. Coli O104:H4 Robert Koch-Institute, Germany, Berlin Accessed 2015 Feb 24
-
Bakteriologische Untersuchungen im Rahmen des Ausbruchs mit E. coli O104:H4. Robert Koch-Institute, Germany, Berlin. 2011. Epid Bull. 35: 325-329. Available: https://www.rki.de/DE/Content/ Infekt/EpidBull/Archiv/2011/Ausgaben/35-11.pdf?-blob = publicationFile. Accessed 2015 Feb 24.
-
(2011)
Epid Bull.
, vol.35
, pp. 325-329
-
-
-
14
-
-
48749112422
-
Analysis of a collection of hemolytic uremic syndrome-associated enterohemorrhagic Escherichia coli
-
PMID: 18680658
-
Mellmann A, Bielaszewska M, Köck R, Friedrich AW, Fruth A, Middendorf B, et al. Analysis of a collection of hemolytic uremic syndrome-associated enterohemorrhagic Escherichia coli. Emerg Infect Dis. 2008; 14: 1287-1290. doi: 10.3201/eid1408.071082 PMID: 18680658
-
(2008)
Emerg Infect Dis.
, vol.14
, pp. 1287-1290
-
-
Mellmann, A.1
Bielaszewska, M.2
Köck, R.3
Friedrich, A.W.4
Fruth, A.5
Middendorf, B.6
-
15
-
-
79951947280
-
Comparative analysis of virulence genes, genetic diversity, and phylogeny of Shiga toxin 2 g and heat-stable enterotoxin STIa encoding Escherichia coli isolates from humans, animals, and environmental sources
-
PMID: 20728406
-
Prager R, Fruth A, Busch U, Tietze E. Comparative analysis of virulence genes, genetic diversity, and phylogeny of Shiga toxin 2 g and heat-stable enterotoxin STIa encoding Escherichia coli isolates from humans, animals, and environmental sources. Int J Med Microbiol. 2011; 301: 181-191. doi: 10.1016/j. ijmm.2010.06.003 PMID: 20728406
-
(2011)
Int J Med Microbiol
, vol.301
, pp. 181-191
-
-
Prager, R.1
Fruth, A.2
Busch, U.3
Tietze, E.4
-
16
-
-
84926627920
-
-
Escherichia coli MLST Database [Internet] Accessed 2015 Feb 24
-
Escherichia coli MLST Database [Internet]. Available: http://mlst.warwick.ac.uk/mlst/dbs/Ecoli. Accessed 2015 Feb 24.
-
-
-
-
17
-
-
84899670451
-
Two novel EHEC/EAEC hybrid strains isolated from human infections
-
PMID: 24752200
-
Prager R, Lang C, Aurass P, Fruth A, Tietze E, Flieger A, et al. Two Novel EHEC/EAEC Hybrid Strains Isolated from Human Infections. PLoS One. 2014; 9: e95379. doi: 10.1371/journal.pone.0095379 PMID: 24752200
-
(2014)
PLoS One.
, vol.9
, pp. e95379
-
-
Prager, R.1
Lang, C.2
Aurass, P.3
Fruth, A.4
Tietze, E.5
Flieger, A.6
-
18
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
PMID: 22388286
-
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012; 9: 357-359. doi: 10.1038/nmeth.1923 PMID: 22388286
-
(2012)
Nat Methods.
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
20
-
-
77956295988
-
The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
PMID: 20644199
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010; 20:1297-1303. doi: 10.1101/gr.107524.110 PMID: 20644199
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
-
21
-
-
84868319863
-
Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2
-
PMID: 23133618
-
Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, et al. Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2. PLoS One. 2012; 7: e48228. doi: 10.1371/journal. pone.0048228 PMID: 23133618
-
(2012)
PLoS One
, vol.7
, pp. e48228
-
-
Ahmed, S.A.1
Awosika, J.2
Baldwin, C.3
Bishop-Lilly, K.A.4
Biswas, B.5
Broomall, S.6
-
22
-
-
84857411659
-
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
-
PMID: 22315421
-
Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, et al. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Proc Natl Acad Sci USA. 2012; 109: 3065-3070. doi: 10.1073/pnas.1121491109 PMID: 22315421
-
(2012)
Proc Natl Acad Sci USA.
, vol.109
, pp. 3065-3070
-
-
Grad, Y.H.1
Lipsitch, M.2
Feldgarden, M.3
Arachchi, H.M.4
Cerqueira, G.C.5
Fitzgerald, M.6
-
23
-
-
84874027598
-
Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: Short-term evolution of an emerging pathogen
-
PMID: 23341549
-
Grad YH, Godfrey P, Cerquiera GC, Mariani-Kurkdjian P, Gouali M, Bingen E, et al. Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen. mBio. 2013; 4: e00452-12. doi: 10.1128/mBio.00452-12 PMID: 23341549
-
(2013)
MBio.
, vol.4
, pp. e00452-e00512
-
-
Grad, Y.H.1
Godfrey, P.2
Cerquiera, G.C.3
Mariani-Kurkdjian, P.4
Gouali, M.5
Bingen, E.6
-
24
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogeny
-
PMID: 11524383
-
Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics. 2001; 17: 754-755. PMID: 11524383
-
(2001)
Bioinformatics.
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
26
-
-
84926686590
-
-
[Internet] Accessed 2015 Feb 24
-
MIRA web site [Internet]. Available: http://sourceforge.net/projects/mira-assembler. Accessed 2015 Feb 24.
-
-
-
-
27
-
-
84926643493
-
-
Geneious 7.1 created by Biomatters Accessed 2015 Feb 24
-
Geneious 7.1 created by Biomatters. Available from http://www.geneious.com. Accessed 2015 Feb 24.
-
-
-
-
28
-
-
0034053725
-
A greedy algorithm for aligning DNA sequences
-
PMID: 10890397
-
Zhang Z, Schwartz S, Wagner L, MillerW(2000) A greedy algorithm for aligning DNA sequences. J Comput Biol 7: 203-214. PMID: 10890397
-
(2000)
J Comput Biol
, vol.7
, pp. 203-214
-
-
Zhang, Z.1
Schwartz, S.2
Wagner, L.3
Miller, W.4
-
29
-
-
84870490179
-
-
Basic Local Alignment Search Tool [Internet] Accessed 2015 Feb 24
-
Basic Local Alignment Search Tool [Internet]. National Center for Biotechnology Information. Available: http://blast.ncbi.nlm.nih.gov/Blast.cgi. Accessed 2015 Feb 24.
-
National Center for Biotechnology Information
-
-
-
30
-
-
84871840312
-
Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4
-
PMID: 23248326
-
Guy L, Jernberg C, Ivarsson S, Hedenström I, Engstrand L, Andersson SG. Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4. Proc Natl Acad Sci USA. 2012; 109: E3627-E3628. doi: 10.1073/pnas.1206246110 PMID: 23248326
-
(2012)
Proc Natl Acad Sci USA.
, vol.109
, pp. E3627-E3628
-
-
Guy, L.1
Jernberg, C.2
Ivarsson, S.3
Hedenström, I.4
Engstrand, L.5
Andersson, S.G.6
-
31
-
-
84871831847
-
Reply to Guy
-
PMID: 23479789
-
Grad YH, Lipsitch M, Griggs AD, Haas BJ, Shea TP, McCowan C, et al. Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany. Proc Natl Acad Sci USA. 2012; 109: E3629-E3630. PMID: 23479789
-
(2012)
Proc Natl Acad Sci USA.
, vol.109
, pp. E3629-E3630
-
-
Grad, Y.H.1
Lipsitch, M.2
Griggs, A.D.3
Haas, B.J.4
Shea, T.P.5
McCowan, C.6
-
32
-
-
33745282930
-
Sex and virulence in Escherichia coli: An evolutionary perspective
-
PMID: 16689791
-
Wirth T, Falush D, Lan R, Colles F, Mensa P, Wieler LH, et al. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol. 2006; 60: 1136-1151. PMID: 16689791
-
(2006)
Mol Microbiol.
, vol.60
, pp. 1136-1151
-
-
Wirth, T.1
Falush, D.2
Lan, R.3
Colles, F.4
Mensa, P.5
Wieler, L.H.6
-
33
-
-
84868318731
-
Spread of a distinct Stx2-encoding phage prototype among E. Coli O104:H4 strains from outbreaks in Germany, Norway and Georgia
-
PMID: 22811533
-
Beutin L, Hammerl JA, Strauch E, Reetz J, Dieckmann R, Kelner-Burgos Y, et al. Spread of a distinct Stx2-encoding phage prototype among E. coli O104:H4 strains from outbreaks in Germany, Norway and Georgia. J Virol. 2012; 86: 10444-10455. doi: 10.1128/JVI.00986-12 PMID: 22811533
-
(2012)
J Virol.
, vol.86
, pp. 10444-10455
-
-
Beutin, L.1
Hammerl, J.A.2
Strauch, E.3
Reetz, J.4
Dieckmann, R.5
Kelner-Burgos, Y.6
-
34
-
-
0036701672
-
Chronic diarrhea, hemorrhagic colitis, and hemolytic-uremic syndrome associated with HEp-2 adherent Escherichia coli in adults infected with human immunodeficiency virus in Bangui, Central African Republic
-
PMID: 12149388
-
Mossoro C, Glaziou P, Yassibanda S, Lan NT, Bekondi C, Minssart P, et al. Chronic diarrhea, hemorrhagic colitis, and hemolytic-uremic syndrome associated with HEp-2 adherent Escherichia coli in adults infected with human immunodeficiency virus in Bangui, Central African Republic. J Clin Microbiol. 2002; 40: 3086-3088. PMID: 12149388
-
(2002)
J Clin Microbiol.
, vol.40
, pp. 3086-3088
-
-
Mossoro, C.1
Glaziou, P.2
Yassibanda, S.3
Lan, N.T.4
Bekondi, C.5
Minssart, P.6
-
35
-
-
83155192979
-
Presence of Enterohemorrhagic Escherichia coli ST678/O104:H4 in France Prior to 2011
-
PMID: 22003010
-
Monecke S, Mariani-Kurkdjian P, Bingen E, Weill FC, Baliere C, Slickers P, et al. Presence of Enterohemorrhagic Escherichia coli ST678/O104:H4 in France Prior to 2011. Appl Environ Microbiol. 2011; 77: 8784-8786. doi: 10.1128/AEM.06524-11 PMID: 22003010
-
(2011)
Appl Environ Microbiol.
, vol.77
, pp. 8784-8786
-
-
Monecke, S.1
Mariani-Kurkdjian, P.2
Bingen, E.3
Weill, F.C.4
Baliere, C.5
Slickers, P.6
-
36
-
-
84877594872
-
Adaptive Mutations and Replacements of Virulence Traits in the Escherichia coli O104:H4 Outbreak Population
-
PMID: 23675451
-
Guy L, Jernberg C, Arvén Norling J, Ivarsson S, Hedenström I, Melefors Ö, et al. Adaptive Mutations and Replacements of Virulence Traits in the Escherichia coli O104:H4 Outbreak Population. PLoS One. 2013; 8(5): e63027. doi: 10.1371/journal.pone.0063027 PMID: 23675451
-
(2013)
PLoS One.
, vol.8
, Issue.5
, pp. e63027
-
-
Guy, L.1
Jernberg, C.2
Arvén Norling, J.3
Ivarsson, S.4
Hedenström, I.5
Melefors Ö.6
-
37
-
-
84856266240
-
Outbreak of haemolytic uraemic syndrome due to Shiga toxin-producing Escherichia coli O104:H4 among French tourists returning from Turkey
-
September 2011 Jan 26. pii: PMID: 22297137
-
Jourdan-da Silva N, Watrin M, Weill FX, King LA, Gouali M, Mailles A, et al. Outbreak of haemolytic uraemic syndrome due to Shiga toxin-producing Escherichia coli O104:H4 among French tourists returning from Turkey, September 2011. Euro Surveill. 2012 Jan 26. 17(4). pii: 20065. PMID: 22297137
-
(2012)
Euro Surveill
, vol.17
, Issue.4
, pp. 20065
-
-
Jourdan-da Silva, N.1
Watrin, M.2
Weill, F.X.3
King, L.A.4
Gouali, M.5
Mailles, A.6
-
38
-
-
84898407847
-
Results of surveillance for infections with Shiga toxin-producing Escherichia coli (STEC) of serotype O104:H4 after the large outbreak in Germany
-
July to December 2011 Apr 10. pii: PMID: 24739983
-
Frank C, Milde-Busch A, Werber D. Results of surveillance for infections with Shiga toxin-producing Escherichia coli (STEC) of serotype O104:H4 after the large outbreak in Germany, July to December 2011. Euro Surveill. 2014 Apr 10. 19(14). pii: 20760. PMID: 24739983
-
(2014)
Euro Surveill
, vol.19
, Issue.14
, pp. 20760
-
-
Frank, C.1
Milde-Busch, A.2
Werber, D.3
-
39
-
-
84872018043
-
Carrier prevalence, secondary household transmission and long-term shedding in two districts during the Escherichia coli O104:H4 outbreak in Germany, 2011
-
PMID: 23175763
-
Abu Sin M, Takla A, Flieger A, Prager R, Fruth A, Tietze E, et al. Carrier prevalence, secondary household transmission and long-term shedding in two districts during the Escherichia coli O104:H4 outbreak in Germany, 2011. J Infect Dis. 2013; 207:432-438. doi: 10.1093/infdis/jis702 PMID: 23175763
-
(2013)
J Infect Dis.
, vol.207
, pp. 432-438
-
-
Abu Sin, M.1
Takla, A.2
Flieger, A.3
Prager, R.4
Fruth, A.5
Tietze, E.6
-
40
-
-
84921951972
-
Enteroaggregative Shiga toxin-producing Escherichia coli of serotype O104:H4 in Belgium and Luxembourg
-
PMID: 25356363
-
De Rauw K, Vincken S, Garabedian L, Levtchenko E, Hubloue I, Verhaegen J, et al. Enteroaggregative Shiga toxin-producing Escherichia coli of serotype O104:H4 in Belgium and Luxembourg. New Microbes New Infect. 2014; 2(5): 138-143. doi: 10.1002/nmi2.58 PMID: 25356363
-
(2014)
New Microbes New Infect.
, vol.2
, Issue.5
, pp. 138-143
-
-
De Rauw, K.1
Vincken, S.2
Garabedian, L.3
Levtchenko, E.4
Hubloue, I.5
Verhaegen, J.6
|