-
1
-
-
33846706581
-
TOPP - the OpenMS proteomics pipeline
-
Kohlbacher, O., Reinert, K., Gropl, C., Lange, E. et al., TOPP - the OpenMS proteomics pipeline. Bioinformatics 2007, 23, e191-197.
-
(2007)
Bioinformatics
, vol.23
, pp. e191-e197
-
-
Kohlbacher, O.1
Reinert, K.2
Gropl, C.3
Lange, E.4
-
2
-
-
42249108173
-
OpenMS - an open-source software framework for mass spectrometry
-
Sturm, M., Bertsch, A., Gropl, C., Hildebrandt, A. et al., OpenMS - an open-source software framework for mass spectrometry. BMC Bioinformatics 2008, 9, 163.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 163
-
-
Sturm, M.1
Bertsch, A.2
Gropl, C.3
Hildebrandt, A.4
-
3
-
-
84879557098
-
KNIME: the Konstanz Information Miner
-
in:, Springer, Berlin Heidelberg -.
-
Berthold, M. R., Cebron, N., Dill, F., Gabriel, T. R. et al., KNIME: the Konstanz Information Miner, in: Data Analysis, Machine Learning and Applications, Springer, Berlin Heidelberg 2007, pp. 319-326.
-
(2007)
Data Analysis, Machine Learning and Applications
, pp. 319-326
-
-
Berthold, M.R.1
Cebron, N.2
Dill, F.3
Gabriel, T.R.4
-
4
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
5
-
-
7044246160
-
Open mass spectrometry search algorithm
-
Geer, L. Y., Markey, S. P., Kowalak, J. A., Wagner, L. et al., Open mass spectrometry search algorithm. J. Proteome Res. 2004, 3, 958-964.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
-
6
-
-
3142702204
-
TANDEM: matching proteins with tandem mass spectra
-
Craig, R., Beavis, R. C., TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20, 1466-1467.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
7
-
-
84863609997
-
TOPPAS: a graphical workflow editor for the analysis of high-throughput proteomics data
-
Junker, J., Bielow, C., Bertsch, A., Sturm, M. et al., TOPPAS: a graphical workflow editor for the analysis of high-throughput proteomics data. J. Proteome Res. 2012, 11, 3914-3920.
-
(2012)
J. Proteome Res.
, vol.11
, pp. 3914-3920
-
-
Junker, J.1
Bielow, C.2
Bertsch, A.3
Sturm, M.4
-
8
-
-
84907951027
-
The mzTab data exchange format: communicating MS-based proteomics and metabolomics experimental results to a wider audience
-
Griss, J., Jones, A. R., Sachsenberg, T., Walzer, M. et al., The mzTab data exchange format: communicating MS-based proteomics and metabolomics experimental results to a wider audience. Mol. Cell. Proteomics 2014, 13, 2765-2775.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 2765-2775
-
-
Griss, J.1
Jones, A.R.2
Sachsenberg, T.3
Walzer, M.4
-
9
-
-
79958198057
-
General statistical modeling of data from protein relative expression isobaric tags
-
Breitwieser, F. P., Muller, A., Dayon, L., Kocher, T. et al., General statistical modeling of data from protein relative expression isobaric tags. J. Proteome Res. 2011, 10, 2758-2766.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 2758-2766
-
-
Breitwieser, F.P.1
Muller, A.2
Dayon, L.3
Kocher, T.4
-
10
-
-
12444345515
-
Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson, A., Schafer, J., Kuhn, K., Kienle, S. et al., Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 2003, 75, 1895-1904.
-
(2003)
Anal. Chem.
, vol.75
, pp. 1895-1904
-
-
Thompson, A.1
Schafer, J.2
Kuhn, K.3
Kienle, S.4
-
11
-
-
79961225176
-
Probabilistic consensus scoring improves tandem mass spectrometry peptide identification
-
Nahnsen, S., Bertsch, A., Rahnenführer, J., Nordheim, A., Kohlbacher, O., Probabilistic consensus scoring improves tandem mass spectrometry peptide identification. J. Proteome Res. 2011, 10, 3332-3343.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 3332-3343
-
-
Nahnsen, S.1
Bertsch, A.2
Rahnenführer, J.3
Nordheim, A.4
Kohlbacher, O.5
-
12
-
-
84891809953
-
Automated label-free quantification of metabolites from liquid chromatography-mass spectrometry data
-
Kenar, E., Franken, H., Forcisi, S., Wormann, K. et al., Automated label-free quantification of metabolites from liquid chromatography-mass spectrometry data. Mol. Cell. Proteomics 2014, 13, 348-359.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 348-359
-
-
Kenar, E.1
Franken, H.2
Forcisi, S.3
Wormann, K.4
-
13
-
-
34547830862
-
A geometric approach for the alignment of liquid chromatography-mass spectrometry data
-
Lange, E., Gropl, C., Schulz-Trieglaff, O., Leinenbach, A. et al., A geometric approach for the alignment of liquid chromatography-mass spectrometry data. Bioinformatics 2007, 23, i273-281.
-
(2007)
Bioinformatics
, vol.23
, pp. i273-i281
-
-
Lange, E.1
Gropl, C.2
Schulz-Trieglaff, O.3
Leinenbach, A.4
-
14
-
-
84875928072
-
An automated pipeline for high-throughput label-free quantitative proteomics
-
Weisser, H., Nahnsen, S., Grossmann, J., Nilse, L. et al., An automated pipeline for high-throughput label-free quantitative proteomics. J. Proteome Res 2013, 12, 1628-1644.
-
(2013)
J. Proteome Res
, vol.12
, pp. 1628-1644
-
-
Weisser, H.1
Nahnsen, S.2
Grossmann, J.3
Nilse, L.4
-
15
-
-
33846088138
-
HMDB: the Human Metabolome Database
-
Wishart, D. S., Tzur, D., Knox, C., Eisner, R. et al., HMDB: the Human Metabolome Database. Nucleic Acids Res. 2007, 35, D521-526.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D521-D526
-
-
Wishart, D.S.1
Tzur, D.2
Knox, C.3
Eisner, R.4
-
16
-
-
84903728943
-
qcML: an exchange format for quality control metrics from mass spectrometry experiments
-
Walzer, M., Pernas, L. E., Nasso, S., Bittremieux, W. et al., qcML: an exchange format for quality control metrics from mass spectrometry experiments. Mol. Cell. Proteomics 2014, 8, 1905-1913.
-
(2014)
Mol. Cell. Proteomics
, vol.8
, pp. 1905-1913
-
-
Walzer, M.1
Pernas, L.E.2
Nasso, S.3
Bittremieux, W.4
|