메뉴 건너뛰기




Volumn 240, Issue 2, 2015, Pages 324-329

Whole exome sequencing combined with integrated variant annotation prediction identifies asymptomatic tangier disease with compound heterozygous mutations in ABCA1 gene

Author keywords

ABCA1; Exome; Genetics; HDL; Tangier disease

Indexed keywords

ABC TRANSPORTER A1; APOLIPOPROTEIN A1; APOLIPOPROTEIN B; CHOLESTEROL; CHOLESTEROL ESTER TRANSFER PROTEIN; HIGH DENSITY LIPOPROTEIN CHOLESTEROL; PHOSPHATIDYLCHOLINE STEROL ACYLTRANSFERASE; TRIACYLGLYCEROL; ABCA1 PROTEIN, HUMAN; BIOLOGICAL MARKER;

EID: 84926453830     PISSN: 00219150     EISSN: 18791484     Source Type: Journal    
DOI: 10.1016/j.atherosclerosis.2015.04.003     Document Type: Article
Times cited : (16)

References (33)
  • 2
    • 0020595075 scopus 로고
    • High density lipoproteins: epidemiologic profile and risks of coronary artery disease
    • Kannel W.B. High density lipoproteins: epidemiologic profile and risks of coronary artery disease. Am. J. Cardiol. 1983, 52:9B-12B.
    • (1983) Am. J. Cardiol. , vol.52 , pp. 9B-12B
    • Kannel, W.B.1
  • 3
    • 28344442513 scopus 로고    scopus 로고
    • The inverse relationship between serum high-density lipoprotein cholesterol level and all-cause mortality in a 9.6-year follow-up study in the Japanese general population
    • NIPPON DATA90 Research Group
    • Okamura T., Hayakawa T., Kadowaki T., Kita Y., Okayama A., Ueshima H. The inverse relationship between serum high-density lipoprotein cholesterol level and all-cause mortality in a 9.6-year follow-up study in the Japanese general population. Atherosclerosis 2006, 184:143-150. NIPPON DATA90 Research Group.
    • (2006) Atherosclerosis , vol.184 , pp. 143-150
    • Okamura, T.1    Hayakawa, T.2    Kadowaki, T.3    Kita, Y.4    Okayama, A.5    Ueshima, H.6
  • 4
  • 5
    • 84887099827 scopus 로고    scopus 로고
    • Discovery and refinement of loci associated with lipid levels
    • Global Lipids Genetics Consortium
    • Willer C.J., Schmidt E.M., Sengupta S., Peloso G.M., Gustafsson S., et al. Discovery and refinement of loci associated with lipid levels. Nat. Genet. 2013, 45:1274-1283. Global Lipids Genetics Consortium.
    • (2013) Nat. Genet. , vol.45 , pp. 1274-1283
    • Willer, C.J.1    Schmidt, E.M.2    Sengupta, S.3    Peloso, G.M.4    Gustafsson, S.5
  • 6
    • 0025104275 scopus 로고
    • Increased high-density lipoprotein levels caused by a common cholesteryl-ester transfer protein gene mutation
    • Inazu A., Brown M.L., Hesler C.B., Agellon L.B., Koizumi J., Takata K., et al. Increased high-density lipoprotein levels caused by a common cholesteryl-ester transfer protein gene mutation. N.Engl. J. Med. 1990, 323:1234-1238.
    • (1990) N.Engl. J. Med. , vol.323 , pp. 1234-1238
    • Inazu, A.1    Brown, M.L.2    Hesler, C.B.3    Agellon, L.B.4    Koizumi, J.5    Takata, K.6
  • 7
    • 0037056085 scopus 로고    scopus 로고
    • Identification of genetic variants in endothelial lipase in persons with elevated high-density lipoprotein cholesterol
    • de Lemos A.S., Wolfe M.L., Long C.J., Sivapackianathan R., Rader D.J. Identification of genetic variants in endothelial lipase in persons with elevated high-density lipoprotein cholesterol. Circulation 2002, 106:1321-1326.
    • (2002) Circulation , vol.106 , pp. 1321-1326
    • de Lemos, A.S.1    Wolfe, M.L.2    Long, C.J.3    Sivapackianathan, R.4    Rader, D.J.5
  • 8
    • 0020053116 scopus 로고
    • Familial deficiency of apolipoproteins A-I and C-III and precocious coronary-artery disease
    • Norum R.A., Lakier J.B., Goldstein S., Angel A., Goldberg R.B., Block W.D., et al. Familial deficiency of apolipoproteins A-I and C-III and precocious coronary-artery disease. N.Engl. J. Med. 1982, 306:1513-1519.
    • (1982) N.Engl. J. Med. , vol.306 , pp. 1513-1519
    • Norum, R.A.1    Lakier, J.B.2    Goldstein, S.3    Angel, A.4    Goldberg, R.B.5    Block, W.D.6
  • 9
    • 75949151243 scopus 로고
    • The inheritance of high density lipoprotein deficiency (Tangier disease)
    • Fredrickson D.S. The inheritance of high density lipoprotein deficiency (Tangier disease). J.Clin. Invest 1964, 43:228-236.
    • (1964) J.Clin. Invest , vol.43 , pp. 228-236
    • Fredrickson, D.S.1
  • 10
    • 0014386970 scopus 로고
    • The influence of plasma from patients with familial plasma lecithin: cholesterol acyltransferase deficiency on the lipid pattern of erythrocytes
    • Norum K.R., Gjone E. The influence of plasma from patients with familial plasma lecithin: cholesterol acyltransferase deficiency on the lipid pattern of erythrocytes. Scand. J. Clin. Lab. Invest 1968, 22:94-98.
    • (1968) Scand. J. Clin. Lab. Invest , vol.22 , pp. 94-98
    • Norum, K.R.1    Gjone, E.2
  • 11
    • 84867261181 scopus 로고    scopus 로고
    • Approach to the patient with extremely low HDL-cholesterol
    • Rader D.J., de Goma E.M. Approach to the patient with extremely low HDL-cholesterol. J.Clin. Endocrinol. Metab. 2012, 97:3399-3407.
    • (2012) J.Clin. Endocrinol. Metab. , vol.97 , pp. 3399-3407
    • Rader, D.J.1    de Goma, E.M.2
  • 12
    • 84895858942 scopus 로고    scopus 로고
    • Ageneral framework for estimating the relative pathogenicity of human genetic variants
    • Kircher M., Witten D.M., Jain P., O'Roak B.J., Cooper G.M., Shendure J. Ageneral framework for estimating the relative pathogenicity of human genetic variants. Nat. Genet. 2014, 46:310-315.
    • (2014) Nat. Genet. , vol.46 , pp. 310-315
    • Kircher, M.1    Witten, D.M.2    Jain, P.3    O'Roak, B.J.4    Cooper, G.M.5    Shendure, J.6
  • 14
    • 0017718110 scopus 로고
    • Asimple colorimetric method for determination of serum triglycerides with lipoprotein lipase and glycerol dehydrogenase
    • Sugiura M., Oikawa T., Hirano K., Maeda H., Yoshimura H., Sugiyama M., et al. Asimple colorimetric method for determination of serum triglycerides with lipoprotein lipase and glycerol dehydrogenase. Clin. Chim. Acta 1977, 81:125-130.
    • (1977) Clin. Chim. Acta , vol.81 , pp. 125-130
    • Sugiura, M.1    Oikawa, T.2    Hirano, K.3    Maeda, H.4    Yoshimura, H.5    Sugiyama, M.6
  • 15
    • 0018099829 scopus 로고
    • Cholesterol in high-density lipoprotein: use of Mg2+/dextran sulfate in its enzymic measurement
    • Finley P.R., Schifman R.B., Williams R.J., Lichti D.A. Cholesterol in high-density lipoprotein: use of Mg2+/dextran sulfate in its enzymic measurement. Clin. Chem. 1978, 24:931-933.
    • (1978) Clin. Chem. , vol.24 , pp. 931-933
    • Finley, P.R.1    Schifman, R.B.2    Williams, R.J.3    Lichti, D.A.4
  • 17
    • 0017362196 scopus 로고
    • Anew colorimetric method for the determination of plasma lecithin-cholesterol acyltransferase activity
    • Nagasaki T., Akanuma Y. Anew colorimetric method for the determination of plasma lecithin-cholesterol acyltransferase activity. Clin. Chim. Acta 1977, 75:371-375.
    • (1977) Clin. Chim. Acta , vol.75 , pp. 371-375
    • Nagasaki, T.1    Akanuma, Y.2
  • 18
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: a Map reduce framework for analyzing next-generation DNA sequencing data
    • McKenna A., Hanna M., Banks E., Sivachenko A., Cibulskis K., Kernytsky A., et al. The genome analysis toolkit: a Map reduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010, 20:1297-1303.
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6
  • 19
    • 79955483667 scopus 로고    scopus 로고
    • Aframework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo M.A., Banks E., Poplin R., Garimella K.V., Maguire J.R., Hartl C., et al. Aframework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 2011, 43:491-498.
    • (2011) Nat. Genet. , vol.43 , pp. 491-498
    • DePristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5    Hartl, C.6
  • 20
    • 84862506964 scopus 로고    scopus 로고
    • Aprogram for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
    • Cingolani P., Platts A., Wang le L., Coon M., Nguyen T., Wang L., et al. Aprogram for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly. (Austin) 2012, 6:80-92.
    • (2012) Fly. (Austin) , vol.6 , pp. 80-92
    • Cingolani, P.1    Platts, A.2    Wang le, L.3    Coon, M.4    Nguyen, T.5    Wang, L.6
  • 21
    • 84860851277 scopus 로고    scopus 로고
    • Altered metabolism of low-density lipoprotein and very-low-density lipoprotein remnant in autosomal recessive hypercholesterolemia: results from stable isotope kinetic study invivo
    • Tada H., Kawashiri M.A., Ikewaki K., Terao Y., Noguchi T., Nakanishi C., et al. Altered metabolism of low-density lipoprotein and very-low-density lipoprotein remnant in autosomal recessive hypercholesterolemia: results from stable isotope kinetic study invivo. Circ. Cardiovasc Genet. 2012, 5:35-41.
    • (2012) Circ. Cardiovasc Genet. , vol.5 , pp. 35-41
    • Tada, H.1    Kawashiri, M.A.2    Ikewaki, K.3    Terao, Y.4    Noguchi, T.5    Nakanishi, C.6
  • 23
    • 84975742565 scopus 로고    scopus 로고
    • Amap of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium
    • Abecasis G.R., Altshuler D., Auton A., Brooks L.D., Durbin R.M., et al. Amap of human genome variation from population-scale sequencing. Nature 2010, 467:1061-1073. 1000 Genomes Project Consortium.
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Abecasis, G.R.1    Altshuler, D.2    Auton, A.3    Brooks, L.D.4    Durbin, R.M.5
  • 24
    • 84926436979 scopus 로고    scopus 로고
    • Exome Variant Server
    • NHLBI Exome Sequencing Project (ESP). Exome Variant Server. http://evs.gs.washington.edu/EVS/.
  • 25
    • 84926436978 scopus 로고    scopus 로고
    • A reference database of genetic variations in Japanese population
    • Japanese Genetic Variation Consortium. A reference database of genetic variations in Japanese population. http://www.genome.med.kyoto-u.ac.jp/SnpDB.
  • 26
    • 59849113821 scopus 로고    scopus 로고
    • Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
    • Gnirke A., Melnikov A., Maguire J., Rogov P., LeProust E.M., Brockman W., et al. Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat. Biotechnol. 2009, 27:182-189.
    • (2009) Nat. Biotechnol. , vol.27 , pp. 182-189
    • Gnirke, A.1    Melnikov, A.2    Maguire, J.3    Rogov, P.4    LeProust, E.M.5    Brockman, W.6
  • 27
    • 70249111091 scopus 로고    scopus 로고
    • Targeted capture and massively parallel sequencing of 12 human exomes
    • Ng S.B., Turner E.H., Robertson P.D., Flygare S.D., Bigham A.W., Lee C., et al. Targeted capture and massively parallel sequencing of 12 human exomes. Nature 2009, 461:272-276.
    • (2009) Nature , vol.461 , pp. 272-276
    • Ng, S.B.1    Turner, E.H.2    Robertson, P.D.3    Flygare, S.D.4    Bigham, A.W.5    Lee, C.6
  • 31
    • 14644420598 scopus 로고    scopus 로고
    • Genetic variation in ABC transporter A1 contributes to HDL cholesterol in the general population
    • Frikke-Schmidt R., Nordestgaard B.G., Jensen G.B., Tybjærg-Hansen A. Genetic variation in ABC transporter A1 contributes to HDL cholesterol in the general population. J.Clin. Invest 2004, 114:1343-1353.
    • (2004) J.Clin. Invest , vol.114 , pp. 1343-1353
    • Frikke-Schmidt, R.1    Nordestgaard, B.G.2    Jensen, G.B.3    Tybjærg-Hansen, A.4
  • 32
    • 84867895303 scopus 로고    scopus 로고
    • Novel mutations of ABCA1 transporter in patients with Tangier disease and familial HDL deficiency
    • Fasano T., Zanoni P., Rabacchi C., Pisciotta L., Favari E., Adorni M.P., et al. Novel mutations of ABCA1 transporter in patients with Tangier disease and familial HDL deficiency. Mol. Genet. Metab. 2012, 107:534-541.
    • (2012) Mol. Genet. Metab. , vol.107 , pp. 534-541
    • Fasano, T.1    Zanoni, P.2    Rabacchi, C.3    Pisciotta, L.4    Favari, E.5    Adorni, M.P.6
  • 33
    • 0032813808 scopus 로고    scopus 로고
    • Mutations in ABC1 in Tangier disease and familial high-density lipoprotein deficiency
    • Brooks-Wilson A., Marcil M., Clee S.M., Zhang L.H., Roomp K., van Dam M., et al. Mutations in ABC1 in Tangier disease and familial high-density lipoprotein deficiency. Nat. Genet. 1999, 22:336-345.
    • (1999) Nat. Genet. , vol.22 , pp. 336-345
    • Brooks-Wilson, A.1    Marcil, M.2    Clee, S.M.3    Zhang, L.H.4    Roomp, K.5    van Dam, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.