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Volumn 9029, Issue , 2015, Pages 281-292

Gap filling as exact path length problem

Author keywords

[No Author keywords available]

Indexed keywords

DIRECTED GRAPHS; FILLING; MOLECULAR BIOLOGY; POLYNOMIALS;

EID: 84926361099     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-319-16706-0_29     Document Type: Conference Paper
Times cited : (4)

References (20)
  • 1
    • 84862591603 scopus 로고    scopus 로고
    • Toward almost closed genomes with GapFiller
    • Boetzer, M., Pirovano, W.: Toward almost closed genomes with GapFiller. Genome Biology 13(6), R56 (2012)
    • (2012) Genome Biology , vol.13 , Issue.6 , pp. 56
    • Boetzer, M.1    Pirovano, W.2
  • 2
    • 84921748851 scopus 로고    scopus 로고
    • GATB: Genome assembly & analysis tool box
    • Drezen, E., et al.: GATB: genome assembly & analysis tool box. Bioinformatics 30(20), 2959–2961 (2014)
    • (2014) Bioinformatics , vol.30 , Issue.20 , pp. 2959-2961
    • Drezen, E.1
  • 4
    • 84971737376 scopus 로고
    • A mildly exponential time algorithm for approximating the number of solutions to a multidimensional knapsack problem
    • Dyer, M.E., et al.: A mildly exponential time algorithm for approximating the number of solutions to a multidimensional knapsack problem. Combinatorics, Probability & Computing 2(3), 271–284 (1993)
    • (1993) Combinatorics, Probability &Amp; Computing , vol.2 , Issue.3 , pp. 271-284
    • Dyer, M.E.1
  • 6
    • 79952178131 scopus 로고    scopus 로고
    • High-quality draft assemblies of mammalian genomes from massively parallel sequence data
    • Gnerre, S., et al.: High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proceedings of the National Academy of Sciences 108(4), 1513–1518 (2010)
    • (2010) Proceedings of the National Academy of Sciences , vol.108 , Issue.4 , pp. 1513-1518
    • Gnerre, S.1
  • 7
    • 84876266928 scopus 로고    scopus 로고
    • QUAST: Quality assessment tool for genome assemblies
    • Gurevich, A., et al.: QUAST: quality assessment tool for genome assemblies. Bioinformatics 29(8), 1072–1075 (2013)
    • (2013) Bioinformatics , vol.29 , Issue.8 , pp. 1072-1075
    • Gurevich, A.1
  • 8
    • 0003037529 scopus 로고
    • Reducibility among combinatorial problems
    • In: Miller, R.E., Thatcher, J.W. (eds.), Plenum Press, New York
    • Karp, R.M.: Reducibility among combinatorial problems. In: Miller, R.E., Thatcher, J.W. (eds.) Complexity of Computer Computations, pp. 85–103. Plenum Press, New York (1972)
    • (1972) Complexity of Computer Computations , pp. 85-103
    • Karp, R.M.1
  • 9
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz, S., et al.: Versatile and open software for comparing large genomes. Genome Biology 5(2), R12 (2004)
    • (2004) Genome Biology , vol.5 , Issue.2 , pp. 12
    • Kurtz, S.1
  • 10
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., et al.: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10(3), R25 (2009)
    • (2009) Genome Biology , vol.10 , Issue.3 , pp. 25
    • Langmead, B.1
  • 11
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H., Durbin, R.: Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14), 1754–1760 (2009)
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 12
    • 84942887758 scopus 로고    scopus 로고
    • SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
    • Luo, R., et al.: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1(18) (2012)
    • (2012) Gigascience , vol.1 , Issue.18
    • Luo, R.1
  • 13
    • 84871481892 scopus 로고    scopus 로고
    • GapFiller: A de novo assembly approach to fill the gap within paired reads
    • Nadalin, F., et al.: GapFiller: a de novo assembly approach to fill the gap within paired reads. BMC Bioinformatics 13(suppl. 14), S8 (2012)
    • (2012) BMC Bioinformatics , vol.13 , Issue.14 , pp. 8
    • Nadalin, F.1
  • 14
    • 0036462109 scopus 로고    scopus 로고
    • The exact path length problem
    • Nykänen, M., Ukkonen, E.: The exact path length problem. J. Algorithms 42(1), 41–53 (2002)
    • (2002) J. Algorithms , vol.42 , Issue.1 , pp. 41-53
    • Nykänen, M.1    Ukkonen, E.2
  • 15
    • 84896448861 scopus 로고    scopus 로고
    • A survey of tools for variant analysis of next-generation genome sequencing data
    • Pabinger, S., et al.: A survey of tools for variant analysis of next-generation genome sequencing data. Briefings in Bioinformatics 15(2), 256–278 (2013)
    • (2013) Briefings in Bioinformatics , vol.15 , Issue.2 , pp. 256-278
    • Pabinger, S.1
  • 16
    • 0035232164 scopus 로고    scopus 로고
    • Fragment assembly with double-barreled data
    • Pevzner, P.A., Tang, H.: Fragment assembly with double-barreled data. Bioinformatics 17(suppl. 1), S225–S233 (2001)
    • (2001) Bioinformatics , vol.17 , Issue.1 , pp. 225-233
    • Pevzner, P.A.1    Tang, H.2
  • 17
    • 84857893016 scopus 로고    scopus 로고
    • GAGE: A critical evaluation of genome assemblies and assembly algorithms
    • Salzberg, S.L., et al.: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Research 22(3), 557–567 (2012)
    • (2012) Genome Research , vol.22 , Issue.3 , pp. 557-567
    • Salzberg, S.L.1
  • 18
    • 84857838310 scopus 로고    scopus 로고
    • Efficient de novo assembly of large genomes using compressed data structures
    • Simpson, J.T., Durbin, R.: Efficient de novo assembly of large genomes using compressed data structures. Genome Research 22, 549–556 (2012)
    • (2012) Genome Research , vol.22 , pp. 549-556
    • Simpson, J.T.1    Durbin, R.2
  • 19
    • 66449136667 scopus 로고    scopus 로고
    • ABySS: A parallel assembler for short read sequence data
    • Simpson, J., et al.: ABySS: A parallel assembler for short read sequence data. Genome Research 19, 1117–1123 (2009)
    • (2009) Genome Research , vol.19 , pp. 1117-1123
    • Simpson, J.1
  • 20
    • 79953854485 scopus 로고    scopus 로고
    • Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
    • Wetzel, J., et al.: Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC Bioinformatics 12(1), 95 (2011)
    • (2011) BMC Bioinformatics , vol.12 , Issue.1 , pp. 95
    • Wetzel, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.