Phase response of the Arabidopsis thaliana circadian clock to light pulses of different wavelengths

Journal of Biological Rhythms

Volumn 30, Issue 2, 2015, Pages 95-103

  Ohara, Takayuki ^a   Fukuda, Hirokazu ^b   Tokuda, Isao T ^a  

^a RITSUMEIKAN UNIVERSITY   (Japan)

^b Osaka Prefecture University   (Japan)

Author keywords

Arabidopsis thaliana; light wavelength; mathematical model; parameter estimation; phase transition curve; plant circadian rhythm

Indexed keywords

ARABIDOPSIS THALIANA;

ARABIDOPSIS PROTEIN; LUCIFERASE;

ARABIDOPSIS; CIRCADIAN RHYTHM; COLOR; GENETICS; LIGHT; LUMINESCENCE; METABOLISM; PHOTOTRANSDUCTION; PHYSIOLOGY; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CIRCADIAN CLOCKS; CIRCADIAN RHYTHM; COLOR; LIGHT; LIGHT SIGNAL TRANSDUCTION; LUCIFERASES; LUMINESCENT MEASUREMENTS; PLANTS, GENETICALLY MODIFIED;

EID: 84926359064     PISSN: 07487304     EISSN: 15524531     Source Type: Journal    
DOI: 10.1177/0748730415576426     Document Type: Article

References (26)

1. Bujdoso N, Davis SJ. Mathematical modeling of an oscillating gene circuit to unravel the circadian clock network of Arabidopsis thaliana. Front Plant Sci. 2013 ; 4: 3
2. Casal JJ. Phytochromes, cryptochromes, phototropin: photoreceptor interactions in plants. Photochem Photobiol. 2000 ; 71: 1-11
3. Casal JJ, Boccalandro H. Co-action between phytochrome B and HY4 in Arabidopsis thaliana. Planta. 1995 ; 197: 213-218
4. Chen M, Chory J, Fankhauser C. Light signal transduction in higher plants. Annu Rev Genet. 2004 ; 38: 87-117
5. Covington MF, Panda S, Liu XL, Strayer CA, Wagner DR, Kay SA. ELF3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell. 2001 ; 13: 1305-1315
6. Devlin PF, Kay SA. Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicity. Plant Cell. 2000 ; 12: 2499-2510
7. Devlin PF, Kay SA. Circadian photoperception. Annu Rev Physiol. 2001 ; 63: 677-694
8. Dodd AN, Salathia N, Hall A, Kévei E, Tóth R, Nagy F, Hibberd JM, Millar AJ, Webb AAR. Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science. 2005 ; 309: 630-633
9. Foster RG, Helfrich-Förster C. The regulation of circadian clocks by light in fruitflies and mice. Philos Trans R Soc London B Biol Sci. 2001 ; 356: 1779-1789
10. Fukuda H, Ichino T, Kondo T, Murase H. Early diagnosis of productivity through a clock gene promoter activity using a luciferase bioluminescence assay in Arabidopsis thaliana. Environ Control Biol. 2011 ; 49: 51-60
11. Fukuda H, Murase H, Tokuda IT. Controlling circadian rhythms by dark-pulse perturbations in Arabidopsis thaliana. Sci Rep. 2013 1533 ; 3 :
12. Fukuda H, Uchida Y, Nakamichi N. Effect of a dark pulse under continuous red light on the Arabidopsis thaliana circadian rhythm. Environ Control Biol. 2008 ; 46: 123-128
13. Guo H, Yang H, Mockler TC, Lin C. Regulation of flowering time by Arabidopsis photoreceptors. Science. 1998 ; 279: 1360-1363
14. Harmer SL. The circadian system in higher plants. Annu Rev Plant Biol. 2009 ; 60: 357-377
15. Hu W, Franklin KA, Sharrock RA, Jones MA, Harmer SL, Lagarias JC. Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis. Proc Natl Acad Sci U S A. 2013 ; 110: 1542-1547
16. Johnson CH Circadian Clocks from Cell to Human. Hiroshige T Honma K, ed. Sapporo, Japan: Hokkaido University Press ; 1992: 209-249.
17. Johnson CH, Elliott JA, Foster R. Entrainment of circadian programs. Chronobiol Int. 2003 ; 20: 741-774
18. Kondo T, Strayer CA, Kulkarni RD, Taylor W, Ishiura M, Golden SS, Johnson CH. Circadian rhythms in prokaryotes: Luciferase as a reporter of circadian gene expression in cyanobacteria. Proc Natl Acad Sci U S A. 1993 ; 90: 5672-5676
19. Locke JCW, Millar AJ, Turner MS. Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. J Theor Biol. 2005 ; 234: 383-393
20. McClung CR. Plant circadian rhythms. Plant Cell. 2006 ; 18: 792-803
21. Nakamichi N, Ito S, Oyama T, Yamashino T, Kondo T, Mizuno T. Characterization of plant circadian rhythms by employing Arabidopsis cultured cells with bioluminescence reporters. Plant Cell Physiol. 2004 ; 45: 57-67
22. Pikovsky A, Rosenblum M, Kurths J Synchronization: A Universal Concept in Nonlinear Sciences. Cambridge, UK: Cambridge University Press ; 2001 :
23. Pokhilko A, Fernández AP, Edwards KD, Southern MM, Halliday KJ, Millar AJ. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Mol Syst Biol. 2012 ; 8: 574
24. Pokhilko A, Hodge SK, Stratford K, Knox K, Edwards KD, Thomson AW, Mizuno T, Millar AJ. Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model. Mol Syst Biol. 2010 ; 6: 416
25. Rizzini L, Favory JJ, Cloix C, Faggionato D, O'Hara A, Kaiserli E, Baumeister R, Schäfer E, Nagy F, Jenkins GI, et al. Perception of UV-B by the Arabidopsis UVR8 protein.. 2011 Science ; 332: 103-106
26. Roenneberg T, Foster RG. Twilight times: Light and the circadian system. Photochem Photobiol. 1997 ; 66: 549-561