Complete genome sequence of canine astrovirus with molecular and epidemiological characterisation of UK strains

Veterinary Microbiology

Volumn 177, Issue 1-2, 2015, Pages 206-213

  Caddy, Sarah L ^a,b   Goodfellow, Ian ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

Canine astrovirus; Complete genome; Gastroenteritis

Indexed keywords

CAPSID PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ASTROVIRUS; CANINE ASTROVIRUS; CONTROLLED STUDY; DOG DISEASE; FECES ANALYSIS; GENETIC HETEROGENEITY; GENETIC VARIABILITY; GENOME ANALYSIS; MOLECULAR EPIDEMIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PREVALENCE; SEQUENCE ALIGNMENT; UNITED KINGDOM; VIRAL GASTROENTERITIS; VIRUS CAPSID; VIRUS GENOME; VIRUS STRAIN; ANIMAL; ASTROVIRIDAE; ASTROVIRIDAE INFECTIONS; DNA SEQUENCE; DOG; DOG DISEASES; FECES; GASTROENTERITIS; GENETICS; GREAT BRITAIN; MOLECULAR GENETICS; PET ANIMAL; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; VETERINARY; VIROLOGY;

ANIMALIA; ASTROVIRIDAE; CANIS FAMILIARIS; MIRIDAE;

AMINO ACID SEQUENCE; ANIMALS; ASTROVIRIDAE; ASTROVIRIDAE INFECTIONS; BASE SEQUENCE; CAPSID PROTEINS; DOG DISEASES; DOGS; FECES; GASTROENTERITIS; GENOME, VIRAL; GREAT BRITAIN; MOLECULAR SEQUENCE DATA; PETS; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SPECIES SPECIFICITY;

EID: 84926248055     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2015.03.011     Document Type: Article

References (25)

1. Al-Mutairy B., Walter J.E., Pothen A., Mitchell D.K. Genome prediction of putative genome-linked viral protein (VPg) of astroviruses. Virus Genes 2005, 31:21-30. 10.1007/s11262-004-2196-1.
2. Appleton H., Higgins P.G. Letter: viruses and gastroenteritis in infants. Lancet 1975, 1:1297.
3. Banos-Lara M.D.R., Méndez E. Role of individual caspases induced by astrovirus on the processing of its structural protein and its release from the cell through a non-lytic mechanism. Virology 2010, 401:322-332. 10.1016/j.virol.2010.02.028.
4. Caddy S., Emmott E., El-Attar L., Mitchell J., de Rougemont A., Brownlie J., Goodfellow I. Serological evidence for multiple strains of canine norovirus in the UK dog population. PLOS ONE 2013, 8:e81596. 10.1371/journal.pone.0081596.
5. Castro T.X., Cubel Garcia R.C.N., Costa E.M., Leal R.M., Xavier M.D.P.T., Leite J.P.G. Molecular characterisation of calicivirus and astrovirus in puppies with enteritis. Vet. Rec. 2013, 172:557. 10.1136/vr.101566.
6. Choi S., Lim S., Kim Y., Cho Y., Song J., An D. Phylogenetic analysis of astrovirus and kobuvirus in Korean dogs. J. Vet. Med. Sci. 2014, 78:1141-1145.
7. De Benedictis P., Schultz-Cherry S., Burnham A., Cattoli G. Astrovirus infections in humans and animals - molecular biology, genetic diversity, and interspecies transmissions. Infect. Genet. Evol. 2011, 11:1529-1544. 10.1016/j.meegid.2011.07.024.
8. Dong J., Dong L., Méndez E., Tao Y. Crystal structure of the human astrovirus capsid spike. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:12681-12686. 10.1073/pnas.1104834108.
9. Fernández J., de Oña M., Melón S., Alvarez-Argüelles M.E., Boga J.A. Noroviruses as cause of gastroenteritis in elderly patients. Aging Clin. Exp. Res. 2011, 23:145-147. 10.3275/7040.
10. Fuentes C., Bosch A., Pintó R.M., Guix S. Identification of human astrovirus genome-linked protein (VPg) essential for virus infectivity. J. Virol. 2012, 86:10070-10078. 10.1128/JVI.00797-12.
11. Garcia-Boronat M., Diez-Rivero C.M., Reinherz E.L., Reche P.A. PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery. Nucleic Acids Res. 2008, 36:W35-W41. 10.1093/nar/gkn211.
12. Grellet A., De Battisti C., Feugier A., Pantile M., Marciano S., Grandjean D., Cattoli G. Prevalence and risk factors of astrovirus infection in puppies from French breeding kennels. Vet. Microbiol. 2012, 157:214-219. 10.1016/j.vetmic.2011.11.012.
13. King A.M., Adams M.J., Carstens E.B., Lefkowitz E.J. Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses 2011, Elsevier, London, UK.
14. Madeley C.R., Cosgrove B.P. Letter: 28nm particles in faeces in infantile gastroenteritis. Lancet 1975, 2:451-452.
15. Marczinke B., Bloys A., Brown T., Willcocks M., Carter M.J., Brierley I. The human astrovirus RNA-dependent RNA polymerase coding region is expressed by ribosomal frameshifting. J. Virol. 1994, 68:5588-5595.
16. Martella V., Moschidou P., Lorusso E., Mari V., Camero M., Bellacicco A., Losurdo M., Pinto P., Desario C., Bányai K., Elia G., Decaro N., Buonavoglia C. Detection and characterization of canine astroviruses. J. Gen. Virol. 2011, 92:1880-1887. 10.1099/vir.0.029025-0.
17. Martella V., Moschidou P., Catella C., Larocca V., Pinto P., Losurdo M., Corrente M., Lorusso E., Bànyai K., Decaro N., Lavazza A., Buonavoglia C. Enteric disease in dogs naturally infected by a novel canine astrovirus. J. Clin. Microbiol. 2012, 50:1066-1069. 10.1128/JCM.05018-11.
18. Moser L.A., Schultz-Cherry S. Review pathogenesis of astrovirus infection. Viral Immunol. 2005, 18:4-10.
19. Noel J.S., Lee T.W., Kurtz J.B., Glass R.I., Monroe S.S., Noel J.S., Lee T.W., Kurtz J.B., Glass R.I., Monroe S.S. Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J. Clin. Microbiol. 1995, 33:797-801.
20. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 2013, 30:2725-2729. 10.1093/molbev/mst197.
21. Toffan A., Jonassen C.M., De Battisti C., Schiavon E., Kofstad T., Capua I., Cattoli G. Genetic characterization of a new astrovirus detected in dogs suffering from diarrhoea. Vet. Microbiol. 2009, 139:147-152. 10.1016/j.vetmic.2009.04.031.
22. Willcocks M.M., Brown T.D., Madeley C.R., Carter M.J. The complete sequence of a human astrovirus. J. Gen. Virol. 1994, 75:1785-1788.
23. Willcocks M.M., Kurtz J.B., Lee T.W., Carter M.J. Prevalence of human astrovirus serotype 4: capsid protein sequence and comparison with other strains. Epidemiol. Infect. 1995, 114:385-391.
24. Williams F. Astrovirus-like, coronavirus-like, and parvovirus-like particles detected in the diarrheal stools of beagle pup. Arch. Virol. 1980, 66:215-226.
25. Zhu L.A., Zhao W., Yin H., Shan T.L., Zhu C.X., Yang X., Hua X.G., Cui L. Isolation and characterization of canine astrovirus in China. Arch. Virol. 2011, 156:1671-1675. 10.1007/s00705-011-1022-z.