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Volumn 9780521765619, Issue , 2011, Pages 1-314

Statistical thermodynamics and stochastic kinetics: An introduction for engineers

Author keywords

[No Author keywords available]

Indexed keywords

ENGINEERS; FREE ENERGY; INTELLIGENT SYSTEMS; MOLECULAR DYNAMICS; MONTE CARLO METHODS; QUANTUM THEORY; RANDOM PROCESSES; REACTION KINETICS; REVIEWS; STATISTICAL MECHANICS; TEACHING;

EID: 84926123173     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1017/CBO9781139015554     Document Type: Book
Times cited : (7)

References (128)
  • 1
    • 0000645464 scopus 로고
    • On the problem of random vibrations and of random flights in one, two or three dimensions
    • Lord Rayleigh, On the problem of random vibrations and of random flights in one, two or three dimensions, Phil. Mag., 37, 321-347, (1919).
    • (1919) Phil. Mag , vol.37 , pp. 321-347
    • Rayleigh, L.1
  • 14
  • 22
  • 32
  • 43
  • 47
  • 50
    • 0004179021 scopus 로고
    • New York: Gordon and Breach
    • B. J. Adler (Editor), Theory of Liquids, (New York: Gordon and Breach, 1968).
    • (1968) Theory of Liquids
    • Adler, B.J.1
  • 53
  • 55
    • 0346666957 scopus 로고
    • The distribution of molecules in a model liquid
    • W. E. Morrell and J. H. Hilderbrand, The distribution of molecules in a model liquid, J. Chem. Phys., 4, 224-227, (1936).
    • (1936) J. Chem. Phys , vol.4 , pp. 224-227
    • Morrell, W.E.1    Hilderbrand, J.H.2
  • 56
    • 0039580653 scopus 로고
    • ed. I. Oppenheim, New York: Gordon and Breach Publishing
    • J. G. Kirkwood, Collected Papers, ed. I. Oppenheim, (New York: Gordon and Breach Publishing, 1968).
    • (1968) Collected Papers
    • Kirkwood, J.G.1
  • 57
    • 0004179021 scopus 로고
    • ed. B. Alder, New York: Gordon and Breach Publishing
    • J. G. Kirkwood, Theory of Liquids, ed. B. Alder, (New York: Gordon and Breach Publishing, 1968).
    • (1968) Theory of Liquids
    • Kirkwood, J.G.1
  • 69
  • 101
  • 102
  • 103
    • 0001538909 scopus 로고
    • W. G. Hoover, Phys. Rev., A 31, 1695-1697, (1985).
    • (1985) Phys. Rev , vol.A31 , pp. 1695-1697
    • Hoover, W.G.1
  • 115
    • 15744378289 scopus 로고    scopus 로고
    • Numerical simulation of stochastic gene circuits
    • H. Salis and Y. Kaznessis, Numerical simulation of stochastic gene circuits, Computers & Chem. Eng., 29 (3), 577-588, (2005).
    • (2005) Computers & Chem. Eng , vol.29 , Issue.3 , pp. 577-588
    • Salis, H.1    Kaznessis, Y.2
  • 116
    • 33645463036 scopus 로고    scopus 로고
    • An equation-free probabilistic steady state approximation: Dynamic application to the stochastic simulation of biochemical reaction networks
    • H. Salis and Y. Kaznessis, An equation-free probabilistic steady state approximation: Dynamic application to the stochastic simulation of biochemical reaction networks, J. Chem. Phys., 123 (21), 214106, (2005).
    • (2005) J. Chem. Phys , vol.123 , Issue.21
    • Salis, H.1    Kaznessis, Y.2
  • 117
    • 33645465102 scopus 로고    scopus 로고
    • Multiscale Hy3S: Hybrid stochastic simulations for supercomputers
    • H. Salis, V. Sotiropoulos, and Y. Kaznessis, Multiscale Hy3S: Hybrid stochastic simulations for supercomputers, BMC Bioinformatics, 7 (93), (2006).
    • (2006) BMC Bioinformatics , vol.7 , Issue.93
    • Salis, H.1    Sotiropoulos, V.2    Kaznessis, Y.3
  • 118
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • D. T. Gillespie, A general method for numerically simulating the stochastic time evolution of coupled chemical reactions, J. Comput. Phys., 22, 403-434, (1976).
    • (1976) J. Comput. Phys , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 119
    • 0001144902 scopus 로고    scopus 로고
    • Efficient exact stochastic simulation of chemical systems with many species and many channels
    • M. A. Gibson and J. Bruck, Efficient exact stochastic simulation of chemical systems with many species and many channels, J. Phys. Chem. A, 104, 1876-1889, (2000).
    • (2000) J. Phys. Chem. A , vol.104 , pp. 1876-1889
    • Gibson, M.A.1    Bruck, J.2
  • 120
    • 4644266081 scopus 로고    scopus 로고
    • Efficient formulation of the stochastic simulation algorithm for chemically reacting systems
    • Y. Cao, H. Li, and L. Petzold, Efficient formulation of the stochastic simulation algorithm for chemically reacting systems, J. Chem. Phys., 121, 4059-4067, (2004).
    • (2004) J. Chem. Phys , vol.121 , pp. 4059-4067
    • Cao, Y.1    Li, H.2    Petzold, L.3
  • 121
    • 0037109565 scopus 로고    scopus 로고
    • Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
    • E. L. Haseltine and J. B. Rawlings, Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics, J. Chem. Phys., 117, 6959-6969, (2002).
    • (2002) J. Chem. Phys , vol.117 , pp. 6959-6969
    • Haseltine, E.L.1    Rawlings, J.B.2
  • 122
    • 1542345686 scopus 로고    scopus 로고
    • Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of biochemical reaction networks
    • J. Puchalka and A.M. Kierzek, Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of biochemical reaction networks, Biophys. J., 86, 1357-1372, (2004).
    • (2004) Biophys. J , vol.86 , pp. 1357-1372
    • Puchalka, J.1    Kierzek, A.M.2
  • 123
    • 0034225547 scopus 로고    scopus 로고
    • The chemical Langevin equation
    • D. T. Gillespie, The chemical Langevin equation, J. Chem. Phys., 113, 297-306, (2000).
    • (2000) J. Chem. Phys , vol.113 , pp. 297-306
    • Gillespie, D.T.1
  • 124
    • 0037444724 scopus 로고    scopus 로고
    • Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
    • C. V. Rao and A. P. Arkin, Stochastic chemical kinetics and the quasi-steady-state assumption: application to the Gillespie algorithm, J. Chem. Phys., 118, 4999-5010, (2003).
    • (2003) J. Chem. Phys , vol.118 , pp. 4999-5010
    • Rao, C.V.1    Arkin, A.P.2
  • 125
    • 34347222210 scopus 로고    scopus 로고
    • A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks
    • Samant Asawari, A. Ogunnaike Babatunde and G. Vlachos Dionisios, A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks, BMC Bioinformatics, 8, 175, (2007).
    • (2007) BMC Bioinformatics , vol.8 , pp. 175
    • Asawari, S.1    Babatunde, A.O.2    Dionisios, G.V.3
  • 126
    • 33751347484 scopus 로고    scopus 로고
    • The finite state projection algorithm for the solution of the chemical master equation
    • B. Munsky and M. Khammash, The finite state projection algorithm for the solution of the chemical master equation, J. Chem. Phys., 124, 044104, (2006).
    • (2006) J. Chem. Phys , vol.124
    • Munsky, B.1    Khammash, M.2
  • 127
    • 34249950625 scopus 로고    scopus 로고
    • Stochastic simulation of chemical kinetics
    • D. T. Gillespie, Stochastic simulation of chemical kinetics, Ann. Rev. Phys. Chem., 58, 35-55, (2007).
    • (2007) Ann. Rev. Phys. Chem , vol.58 , pp. 35-55
    • Gillespie, D.T.1
  • 128
    • 33751572545 scopus 로고    scopus 로고
    • Gene regulatory networks: A coarse-grained, equation-free approach to multiscale computation
    • R. Erban, I. Kevrekidis, D. Adalsteinsson, and T. Elston, Gene regulatory networks: A coarse-grained, equation-free approach to multiscale computation, J. Chem. Phys., 124, 084-106, (2006).
    • (2006) J. Chem. Phys , vol.124 , pp. 084-106
    • Erban, R.1    Kevrekidis, I.2    Adalsteinsson, D.3    Elston, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.