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Volumn 132, Issue 2, 2015, Pages 100-108

grain: A computer program to calculate ancestral and partial inbreeding coefficients using a gene dropping approach

Author keywords

Ancestral inbreeding; Gene dropping; Partial inbreeding; Pedigree; Software

Indexed keywords

ANIMAL; COMPUTER PROGRAM; INBREEDING; PEDIGREE; POPULATION GENETICS;

EID: 84925935668     PISSN: 09312668     EISSN: 14390388     Source Type: Journal    
DOI: 10.1111/jbg.12145     Document Type: Article
Times cited : (36)

References (44)
  • 1
    • 0031005077 scopus 로고    scopus 로고
    • Ancestral inbreeding only minimally affects inbreeding depression in mammalian populations
    • Ballou J.D. (1997) Ancestral inbreeding only minimally affects inbreeding depression in mammalian populations. J. Hered., 88, 169-178.
    • (1997) J. Hered. , vol.88 , pp. 169-178
    • Ballou, J.D.1
  • 2
    • 29244457836 scopus 로고    scopus 로고
    • A simulation study on detecting purging of inbreeding depression in captive populations
    • Boakes E.H., Wang J. (2005) A simulation study on detecting purging of inbreeding depression in captive populations. Genet. Res., 86, 139-148.
    • (2005) Genet. Res. , vol.86 , pp. 139-148
    • Boakes, E.H.1    Wang, J.2
  • 3
    • 0038622037 scopus 로고    scopus 로고
    • Pedig: a Fortran package for pedigree analysis suited for large populations
    • Proceedings of the 7th World Congress on Genetics Applied to Livestock Production (WCGALP): Session 28, Communication No. 28-13; 2002 August 19-23, Montpellier, France.
    • Boichard D. (2002) Pedig: a Fortran package for pedigree analysis suited for large populations. In: Proceedings of the 7th World Congress on Genetics Applied to Livestock Production (WCGALP): Session 28, Communication No. 28-13; 2002 August 19-23, Montpellier, France.
    • (2002)
    • Boichard, D.1
  • 4
    • 84925971027 scopus 로고    scopus 로고
    • Pedig2007 - A Fortran Package for Pedigree Analysis Suited for Large Populations.
    • Boichard D. (2007) Pedig2007 - A Fortran Package for Pedigree Analysis Suited for Large Populations.
    • (2007)
    • Boichard, D.1
  • 5
    • 84878595152 scopus 로고    scopus 로고
    • Purging deleterious mutations in conservation programmes: combining optimal contributions within bred matings
    • de Cara M.A.R., Villanueva B., Toro M.A., Fernández J. (2013) Purging deleterious mutations in conservation programmes: combining optimal contributions within bred matings. Heredity, 110, 530-537.
    • (2013) Heredity , vol.110 , pp. 530-537
    • de Cara, M.A.R.1    Villanueva, B.2    Toro, M.A.3    Fernández, J.4
  • 6
    • 33947730498 scopus 로고    scopus 로고
    • PyPedal: a computer program for pedigree analysis
    • Cole J.B. (2007) PyPedal: a computer program for pedigree analysis. Comput. Electron. Agric., 57, 107-113.
    • (2007) Comput. Electron. Agric. , vol.57 , pp. 107-113
    • Cole, J.B.1
  • 7
    • 0002160422 scopus 로고
    • Genetic loads and the cost of natural selection
    • K.I. Kojima (ed.), Springer, Berlin.
    • Crow J.F. (1970) Genetic loads and the cost of natural selection. In: K.I. Kojima (ed.), Mathematical Topics in Population Genetics. Springer, Berlin, pp. 128-177.
    • (1970) Mathematical Topics in Population Genetics , pp. 128-177
    • Crow, J.F.1
  • 10
    • 0002047076 scopus 로고
    • Simulation studies of genealogies
    • Abstract of a presented paper.
    • Edwards A.W.F. (1968) Simulation studies of genealogies. Heredity, 23, 628. Abstract of a presented paper.
    • (1968) Heredity , vol.23 , pp. 628
    • Edwards, A.W.F.1
  • 14
    • 34247874572 scopus 로고    scopus 로고
    • Inferring purging from pedigree data
    • Gulisija D., Crow J.F. (2007) Inferring purging from pedigree data. Evolution, 61, 1043-1051.
    • (2007) Evolution , vol.61 , pp. 1043-1051
    • Gulisija, D.1    Crow, J.F.2
  • 15
    • 33749074698 scopus 로고    scopus 로고
    • Between-founder heterogeneity in inbreeding depression for production in Jersey cows
    • Gulisija D., Gianola D., Weigel K.A., Toro M.A. (2006) Between-founder heterogeneity in inbreeding depression for production in Jersey cows. Livest. Sci., 104, 244-253.
    • (2006) Livest. Sci. , vol.104 , pp. 244-253
    • Gulisija, D.1    Gianola, D.2    Weigel, K.A.3    Toro, M.A.4
  • 16
    • 19944389562 scopus 로고    scopus 로고
    • A note on ENDOG: a computer program for analyzing pedigree information
    • Gutiérrez P., Goyache F. (2005) A note on ENDOG: a computer program for analyzing pedigree information. J. Anim. Breed. Genet., 122, 357-360.
    • (2005) J. Anim. Breed. Genet. , vol.122 , pp. 357-360
    • Gutiérrez, P.1    Goyache, F.2
  • 17
    • 0034496392 scopus 로고    scopus 로고
    • Inbreeding depression in conservation biology
    • Hedrick P.W., Kalinowski S.T. (2000) Inbreeding depression in conservation biology. Annu. Rev. Ecol. Syst., 31, 139-162.
    • (2000) Annu. Rev. Ecol. Syst. , vol.31 , pp. 139-162
    • Hedrick, P.W.1    Kalinowski, S.T.2
  • 18
    • 84921549867 scopus 로고    scopus 로고
    • Estimation of ancestral inbreeding effects on stillbirth, calving ease and birthweight in German Holstein dairy cattle
    • Hinrich D., Bennewitz J., Wellmann R., Thaller G. (2015) Estimation of ancestral inbreeding effects on stillbirth, calving ease and birthweight in German Holstein dairy cattle. J. Anim. Breed. Genet., 132, 59-67.
    • (2015) J. Anim. Breed. Genet. , vol.132 , pp. 59-67
    • Hinrich, D.1    Bennewitz, J.2    Wellmann, R.3    Thaller, G.4
  • 19
    • 0010415447 scopus 로고
    • Variability among families of Tribolium castaneum in inbreeding depression for fitness traits
    • Hohenboken W.D., Kochera Y., Dawson P.S. (1991) Variability among families of Tribolium castaneum in inbreeding depression for fitness traits. J. Anim. Breed. Genet., 108, 446-454.
    • (1991) J. Anim. Breed. Genet. , vol.108 , pp. 446-454
    • Hohenboken, W.D.1    Kochera, Y.2    Dawson, P.S.3
  • 20
    • 84925971026 scopus 로고
    • The spread of genes in populations under selection
    • Proc. 12th Wld's Poult. Congr., Sydney 14-16.
    • James J.W. (1962a) The spread of genes in populations under selection. In: Proc. 12th Wld's Poult. Congr., Sydney, pp. 14-16.
    • (1962)
    • James, J.W.1
  • 21
    • 84974126712 scopus 로고
    • The spread of genes in random mating control populations
    • James J.W. (1962b) The spread of genes in random mating control populations. Genet. Res., 3, 1-10.
    • (1962) Genet. Res. , vol.3 , pp. 1-10
    • James, J.W.1
  • 22
    • 0038472730 scopus 로고
    • Computation of genetic contributions from pedigrees
    • James J.W. (1972) Computation of genetic contributions from pedigrees. Theor. Appl. Genet., 42, 272-273.
    • (1972) Theor. Appl. Genet. , vol.42 , pp. 272-273
    • James, J.W.1
  • 23
    • 0002780832 scopus 로고
    • The spread of genes by natural and artificial selection in closed poultry flock
    • James J.W., McBride G. (1958) The spread of genes by natural and artificial selection in closed poultry flock. J. Genet., 56, 55-62.
    • (1958) J. Genet. , vol.56 , pp. 55-62
    • James, J.W.1    McBride, G.2
  • 24
    • 0033772691 scopus 로고    scopus 로고
    • Inbreeding depression in the Speke's Gazelle captive breeding program
    • Kalinowski S.T., Hedrick P.W., Miller P.S. (2000) Inbreeding depression in the Speke's Gazelle captive breeding program. Conserv. Biol., 14, 1375-1384.
    • (2000) Conserv. Biol. , vol.14 , pp. 1375-1384
    • Kalinowski, S.T.1    Hedrick, P.W.2    Miller, P.S.3
  • 25
    • 61649092397 scopus 로고    scopus 로고
    • Effects of inbreeding on number of piglets born, born alive and weaned in Austrian Large White and Landrace pigs
    • Köck A., Fürst-Waltl B., Baumung R. (2009) Effects of inbreeding on number of piglets born, born alive and weaned in Austrian Large White and Landrace pigs. Archiv für Tierzucht., 52, 51-64.
    • (2009) Archiv für Tierzucht. , vol.52 , pp. 51-64
    • Köck, A.1    Fürst-Waltl, B.2    Baumung, R.3
  • 26
    • 0030785657 scopus 로고    scopus 로고
    • Errata
    • Lacy R.C. (1997) Errata. Evolution, 51, 1025.
    • (1997) Evolution , vol.51 , pp. 1025
    • Lacy, R.C.1
  • 27
    • 0031903535 scopus 로고    scopus 로고
    • Effectiveness of selection in reducing the genetic load in populations of Peromyscus polinotus during generations of inbreeding
    • Lacy R.C., Ballou J. (1998) Effectiveness of selection in reducing the genetic load in populations of Peromyscus polinotus during generations of inbreeding. Evolution, 52, 900-909.
    • (1998) Evolution , vol.52 , pp. 900-909
    • Lacy, R.C.1    Ballou, J.2
  • 28
    • 0030301403 scopus 로고    scopus 로고
    • Hierarchical analysis of inbreeding depression in Peromyscus polionotus
    • Lacy R.C., Alaks G., Walsh A. (1996) Hierarchical analysis of inbreeding depression in Peromyscus polionotus. Evolution, 50, 2187-2200.
    • (1996) Evolution , vol.50 , pp. 2187-2200
    • Lacy, R.C.1    Alaks, G.2    Walsh, A.3
  • 29
    • 0003849877 scopus 로고    scopus 로고
    • Vortex: A stochastic simulation of the extinction process
    • Version 10.0. Chicago Zoological Society, Brookfield, Illinois, USA.
    • Lacy R.C., Pollak J.P., (2014) Vortex: A stochastic simulation of the extinction process. Version 10.0. Chicago Zoological Society, Brookfield, Illinois, USA.
    • (2014)
    • Lacy, R.C.1    Pollak, J.P.2
  • 30
    • 84907894040 scopus 로고    scopus 로고
    • Inbreeding depression in livestock species: review and meta-analysis
    • Leroy G. (2014) Inbreeding depression in livestock species: review and meta-analysis. Anim. Genet., 45, 618-628.
    • (2014) Anim. Genet. , vol.45 , pp. 618-628
    • Leroy, G.1
  • 32
    • 33846620976 scopus 로고    scopus 로고
    • Inbreeding and genetic variability in Australian Holstein-Friesians: a preliminary analysis
    • Man W.Y.N., Nicholas F.W., James J.W. (2001) Inbreeding and genetic variability in Australian Holstein-Friesians: a preliminary analysis. Proc. Assoc. Adv. Anim. Breed. Genet., 14, 325-328.
    • (2001) Proc. Assoc. Adv. Anim. Breed. Genet. , vol.14 , pp. 325-328
    • Man, W.Y.N.1    Nicholas, F.W.2    James, J.W.3
  • 33
    • 84925971025 scopus 로고    scopus 로고
    • Effect of inbreeding contribution from particular ancestors: a preliminary analysis of first lactation milk yields from Holstein Friesians in Australia
    • Proceedings of the 7th World Congress on Genetics Applied to Livestock Production (WCGALP): Session 23, Communication No. 23-01; 2002 August 19-23, Montpellier, France.
    • Man W.Y.N., James J.W., Nicholas F.W. (2002) Effect of inbreeding contribution from particular ancestors: a preliminary analysis of first lactation milk yields from Holstein Friesians in Australia. In: Proceedings of the 7th World Congress on Genetics Applied to Livestock Production (WCGALP): Session 23, Communication No. 23-01; 2002 August 19-23, Montpellier, France.
    • (2002)
    • Man, W.Y.N.1    James, J.W.2    Nicholas, F.W.3
  • 34
    • 33846398883 scopus 로고    scopus 로고
    • A pedigree-analysis approach to the descriptive epidemiology of autosomal-recessive disorders
    • Man W.Y.N., Nicholas F.W., James J.W. (2007) A pedigree-analysis approach to the descriptive epidemiology of autosomal-recessive disorders. Prev. Vet. Med., 78, 262-273.
    • (2007) Prev. Vet. Med. , vol.78 , pp. 262-273
    • Man, W.Y.N.1    Nicholas, F.W.2    James, J.W.3
  • 35
    • 77949851525 scopus 로고    scopus 로고
    • Purging of inbreeding depression within the Irish Holstein-Friesian population
    • McParland S., Kearny F., Berry D.P. (2009) Purging of inbreeding depression within the Irish Holstein-Friesian population. Genet. Sel. Evol., 41, 16.
    • (2009) Genet. Sel. Evol. , vol.41 , pp. 16
    • McParland, S.1    Kearny, F.2    Berry, D.P.3
  • 36
    • 34250450943 scopus 로고
    • Computer programs to estimate genetic contributions and related parameters
    • Miller D.H., Rathie K.A. (1972) Computer programs to estimate genetic contributions and related parameters. Theor. Appl. Genet., 42, 274.
    • (1972) Theor. Appl. Genet. , vol.42 , pp. 274
    • Miller, D.H.1    Rathie, K.A.2
  • 37
    • 77949721092 scopus 로고    scopus 로고
    • Genetic diversity and population structure of the synthetic Pannon White rabbit revealed by pedigree analyses
    • Nagy I., Curik I., Radnai I., Cervantes I., Gyovai P., Baumung R., Farkas J., Szendro Z. (2010) Genetic diversity and population structure of the synthetic Pannon White rabbit revealed by pedigree analyses. J. Anim. Sci., 88, 1267-1275.
    • (2010) J. Anim. Sci. , vol.88 , pp. 1267-1275
    • Nagy, I.1    Curik, I.2    Radnai, I.3    Cervantes, I.4    Gyovai, P.5    Baumung, R.6    Farkas, J.7    Szendro, Z.8
  • 38
    • 0028887671 scopus 로고
    • Genetic variation in inbreeding depression in the red flour beetle Tribolium castaneum
    • Pray L.A., Goodnight C.J. (1995) Genetic variation in inbreeding depression in the red flour beetle Tribolium castaneum. Evolution, 49, 176-188.
    • (1995) Evolution , vol.49 , pp. 176-188
    • Pray, L.A.1    Goodnight, C.J.2
  • 39
    • 0032337836 scopus 로고    scopus 로고
    • Effect of founder allele survival and inbreeding depression on litter size in a closed line of Large White pigs
    • Rodrigáñez J., Toro M.A., Rodriguez M.C., Silió L. (1998) Effect of founder allele survival and inbreeding depression on litter size in a closed line of Large White pigs. Anim. Sci., 67, 573-582.
    • (1998) Anim. Sci. , vol.67 , pp. 573-582
    • Rodrigáñez, J.1    Toro, M.A.2    Rodriguez, M.C.3    Silió, L.4
  • 40
    • 33847655188 scopus 로고    scopus 로고
    • Evaluation of ancestral inbreeding coefficients: Ballou's formula versus gene dropping
    • Suwanlee S., Baumung R., Sölkner J., Curik I. (2007) Evaluation of ancestral inbreeding coefficients: Ballou's formula versus gene dropping. Conserv. Genet., 8, 489-495.
    • (2007) Conserv. Genet. , vol.8 , pp. 489-495
    • Suwanlee, S.1    Baumung, R.2    Sölkner, J.3    Curik, I.4
  • 41
    • 33745289109 scopus 로고    scopus 로고
    • Ancestral inbreeding reduces the magnitude of inbreeding depression in Drosophila melanogaster
    • Swindell W.R., Bouzat J.L. (2006) Ancestral inbreeding reduces the magnitude of inbreeding depression in Drosophila melanogaster. Evolution, 60, 762-767.
    • (2006) Evolution , vol.60 , pp. 762-767
    • Swindell, W.R.1    Bouzat, J.L.2


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