-
1
-
-
24044535485
-
Efficient sorting of genomic permutations by translocation, inversion and block interchange
-
S. Yancopoulos, O. Attie, and R. Friedberg, "Efficient Sorting of Genomic Permutations by Translocation, Inversion and Block Interchange, " Bioinformatics, vol. 21, no. 16, pp. 3340-3346, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3340-3346
-
-
Yancopoulos, S.1
Attie, O.2
Friedberg, R.3
-
2
-
-
0035234694
-
A new implementation and detailed study of breakpoint analysis
-
B. Moret, S. Wyman, D. Bader, T. Warnow, and M. Yan, "A New Implementation and Detailed Study of Breakpoint Analysis, " Proc. Sixth Pacific Symp. Biocomputing (PSB ?01), pp. 583-594, 2001.
-
(2001)
Proc. Sixth Pacific Symp. Biocomputing (PSB ?01)
, pp. 583-594
-
-
Moret, B.1
Wyman, S.2
Bader, D.3
Warnow, T.4
Yan, M.5
-
3
-
-
0036143403
-
Genome-scale evolution: Reconstructing gene orders in the ancestral species
-
G. Bourque and P. Pevzner, "Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species, " Genome Research, vol. 12, pp. 26-36, 2002.
-
(2002)
Genome Research
, vol.12
, pp. 26-36
-
-
Bourque, G.1
Pevzner, P.2
-
4
-
-
4544340629
-
Phylogenetic reconstruction from arbitrary gene-order data
-
BIBE ?04
-
J. Tang, B. Moret, L. Cui, and C. dePamphilis, "Phylogenetic Reconstruction from Arbitrary Gene-Order Data, " Proc. Fourth IEEE Symp. Bioinformatics and Bioeng. (BIBE ?04), pp. 592-599, 2004.
-
(2004)
Proc. Fourth IEEE Symp. Bioinformatics and Bioeng
, pp. 592-599
-
-
Tang, J.1
Moret, B.2
Cui, L.3
De Pamphilis, C.4
-
5
-
-
79952412540
-
Phylogenetic reconstruction with gene rearrangements and gene losses
-
Y. Zhang, F. Hu, and J. Tang, "Phylogenetic Reconstruction with Gene Rearrangements and Gene Losses, " Proc. IEEE Int?l Conf. Bioinformatics and Biomedicine (BIBM ?10), pp. 35-38, 2010.
-
(2010)
Proc IEEE Int?l Conf. Bioinformatics and Biomedicine (BIBM ?10)
, pp. 35-38
-
-
Zhang, Y.1
Hu, F.2
Tang, J.3
-
7
-
-
84883346975
-
Reconstructing ancestral genomic orders using binary encoding and probabilistic models
-
F. Hu, L. Zhou, and J. Tang, "Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models, " Proc. Ninth Int?l Symp. Bioinformatics Research and Applications (ISBRA ?13), pp. 17-27, 2013.
-
(2013)
Proc. Ninth Int?l Symp. Bioinformatics Research and Applications (ISBRA ?13)
, pp. 17-27
-
-
Hu, F.1
Zhou, L.2
Tang, J.3
-
8
-
-
55549136564
-
The infinite sites model of genome evolution
-
J. Ma, A. Ratan, B. Raney, B. Suh, W. Miller, and D. Haussler, "The Infinite Sites Model of Genome Evolution, " Proc. Nat?l Academy of Sciences USA, vol. 105, no. 38, pp. 14254-14261, 2008.
-
(2008)
Proc. Nat?l Academy of Sciences USA
, vol.105
, Issue.38
, pp. 14254-14261
-
-
Ma, J.1
Ratan, A.2
Raney, B.3
Suh, B.4
Miller, W.5
Haussler, D.6
-
9
-
-
84866448711
-
Evolution of gene neighborhoods within reconciled phylogenies
-
S. Berard, C. Gallien, B. Boussau, G. Szollosi, V. Daubin, and E. Tannier, "Evolution of Gene Neighborhoods within Reconciled Phylogenies, " Bioinformatics, vol. 28, no. 18, pp. i382-i388, 2012.
-
(2012)
Bioinformatics
, vol.28
, Issue.18
-
-
Berard, S.1
Gallien, C.2
Boussau, B.3
Szollosi, G.4
Daubin, V.5
Tannier, E.6
-
10
-
-
84878052896
-
A flexible ancestral genome reconstruction method based on gapped adjacencies
-
article
-
Y. Gagnon, M. Blanchette, and N. El-Mabrouk, "A Flexible Ancestral Genome Reconstruction Method Based on Gapped Adjacencies, "BMC Bioinformatics, vol. 13 (Suppl 19), article S4, 2012.
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.SUPPL 19
-
-
Gagnon, Y.1
Blanchette, M.2
El-Mabrouk, N.3
-
11
-
-
33750386912
-
Reconstructing contiguous regions of an ancestral genome
-
J. Ma, L. Zhang, B. Suh, B. Raney, R. Burhans, W. Kent, M. Blanchette, D. Haussler, and W. Miller, "Reconstructing Contiguous Regions of an Ancestral Genome, " Genome Research, vol. 16, no. 12, pp. 1557-1565, 2006.
-
(2006)
Genome Research
, vol.16
, Issue.12
, pp. 1557-1565
-
-
Ma, J.1
Zhang, L.2
Suh, B.3
Raney, B.4
Burhans, R.5
Kent, W.6
Blanchette, M.7
Haussler, D.8
Miller, W.9
-
12
-
-
67149106149
-
Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern saccharomyces cerevisiae genome
-
J. Gordon, K. Byrne, and K. Wolfe, "Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome, "PLoS Genetics, vol. 5, no. 5, p. e1000485, 2009.
-
(2009)
PLoS Genetics
, vol.5
, Issue.5
-
-
Gordon, J.1
Byrne, K.2
Wolfe, K.3
-
13
-
-
0038589571
-
GeneTRACE: Reconstruction of gene content of ancestral species
-
V. Kunin and C. Ouzounis, "GeneTRACE: Reconstruction of Gene Content of Ancestral Species, " Bioinformatics, vol. 19, no. 11, pp. 1412-1416, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.11
, pp. 1412-1416
-
-
Kunin, V.1
Ouzounis, C.2
-
14
-
-
33750403801
-
RAxML-vi-hpc: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
A. Stamatakis, "RAxML-VI-HPC: Maximum Likelihood-Based Phylogenetic Analyses with Thousands of Taxa and Mixed Models, " Bioinformatics, vol. 22, no. 21, pp. 2688-2690, 2006.
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
16
-
-
84883394584
-
Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes
-
Y. Lin, F. Hu, J. Tang, and B. Moret, "Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes, " Proc. Pacific Symp. Biocomputing (PSB ?13), pp. 285-296, 2013.
-
(2013)
Proc. Pacific Symp. Biocomputing (PSB ?13)
, pp. 285-296
-
-
Lin, Y.1
Hu, F.2
Tang, J.3
Moret, B.4
-
17
-
-
0028820333
-
A new method of inference of ancestral nucleotide and amino acid sequences
-
Z. Yang, K. Sudhir, and N. Masatoshi, "A New Method of Inference of Ancestral Nucleotide and Amino Acid Sequences, " Genetics, vol. 141, no. 4, pp. 1641-650, 1995.
-
(1995)
Genetics
, vol.141
, Issue.4
, pp. 1641-1650
-
-
Yang, Z.1
Sudhir, K.2
Masatoshi, N.3
-
19
-
-
36348942008
-
-
D. Applegate, R. Bixby, V. Chvatal, and W. Cook, "Concorde TSP Solver, " http://www.math.uwaterloo.ca/tsp/concorde/, 2011.
-
(2011)
Concorde Tsp Solver
-
-
Applegate, D.1
Bixby, R.2
Chvatal, V.3
Cook, W.4
|