Electrochemical square scheme analysis of macromolecule-electroactive ligand interactions, and its application to DNA binding

Journal of Electroanalytical Chemistry

Volumn 745, Issue , 2015, Pages 44-55

  De Rache, A ^a   Buess Herman, C ^a   Doneux, Th ^a  

^a UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

Author keywords

DNA; Intrinsic binding constant; Isogalvanic point; Square scheme; Statistical binding; Thrombin binding aptamer

Indexed keywords

ASSOCIATION REACTIONS; DIFFUSION; DNA; DNA SEQUENCES; KINETICS; LIGANDS; MACROMOLECULES; STOICHIOMETRY; TITRATION; VOLTAMMETRY;

APTAMERS; INTRINSIC BINDING; ISOGALVANIC POINT; SQUARE SCHEME; STATISTICAL BINDING;

BINDING SITES;

EID: 84925845958     PISSN: 15726657     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jelechem.2015.03.014     Document Type: Article

References (44)

1. J. Heyrovsky, and D. Ilkovic Polarographic studies with the dropping-mercury electrode. II. The absolute determination of reduction and depolarization potentials Collect. Czech. Chem. Commun. 7 1935 198 214
2. V. Kacena, and L. Matousek Proteins and amino acids. XVIII. The effect of electrolytes on proteins Collect. Czech. Chem. Commun. 18 1953 294 301
3. D.D. De Ford, and D.N. Hume The determination of consecutive formation constants of complex ions from polarographic data J. Am. Chem. Soc. 73 1951 5321 5322
4. D.R. Crow Consecutive overall stability constants of metal complexes in solution from diffusion current data J. Electroanal. Chem. 16 1968 137 144
5. J. Jacq Schema carre: etablissement et Discussion de L'equation Generale de la Courbe Intensite-Potentiel en Regime Stationnaire et Diffusion Convective J. Electroanal. Chem. Interfacial Electrochem. 29 1971 149 180
6. E. Laviron Electrochemical reactions with protonations at equilibrium. Part II. The 1e, 1H+ reaction (four-member square scheme) for a heterogeneous reaction J. Electroanal. Chem. 124 1981 1 7
7. E. Laviron, and L. Roullier The square scheme with the electrochemical reactions at equilibrium - a study by diffusion or thin-layer cyclic voltammetry and by scanning potential coulometry J. Electroanal. Chem. 186 1985 1 15
8. P.D. Beer, P.A. Gale, and G.Z. Chen Electrochemical molecular recognition: pathways between complexation and signalling J. Chem. Soc. Dalton Trans. 1999 1897 1910
9. J.H.R. Tucker, and S.R. Collinson Recent developments in the redox-switched binding of organic compounds Chem. Soc. Rev. 31 2002 147 156
10. J.J. Watkins, and H.S. White Ion-pairing kinetics investigated using nanometer-size Pt electrodes J. Electroanal. Chem. 582 2005 57 63
11. R.A. Mackay Electrochemistry in association colloids Colloids Surf. A 82 1994 1 28
12. T. Matsue, D.H. Evans, T. Osa, and N. Kobayashi Electron-transfer reactions associated with host-guest complexation. Oxidation of ferrocenecarboxylic acid in the presence of beta-cyclodextrin J. Am. Chem. Soc. 107 1985 3411 3417
13. S. Mendoza, E. Castaño, Y. Meas, L.A. Godínez, and A.E. Kaifer Analysis of the voltammetric response of electroactive guests in the presence of non-electroactive hosts at moderate concentrations Electroanalysis 16 2004 1469 1477
14. J.M. Casas-Solvas, E. Ortiz-Salmerón, I. Fernández, L. García-Fuentes, F. Santoyo-González, and A. Vargas-Berenguel Ferrocene-β-cyclodextrin conjugates: synthesis, supramolecular behavior, and use as electrochemical sensors Chem. A Eur. J. 15 2009 8146 8162
15. R. Jiang, and F.C. Anson Association of electroactive counterions with polyelectrolytes. 5. Electrostatic binding of hexaammineruthenium(3+) and hexaamminecobalt(3+) to polyacrylates J. Phys. Chem. 96 1992 10565 10571
16. M.T. Carter, M. Rodriguez, and A.J. Bard Voltammetric studies of the interaction of metal chelates with DNA. 2. Tris-chelated complexes of Cobalt(III) and Iron(III) with 1,10-phenanthroline and 2,2′-bipyridine J. Am. Chem. Soc. 111 1989 8901 8911
17. T.W. Welch, and H.H. Thorp Distribution of metal complexes bound to DNA determined by normal pulse voltammetry J. Phys. Chem. 100 1996 13829 13836
18. M. Seralathan, and S.K. Rangarajan Scheme of squares: Part I. Systems formalism for potentiostatic studies J. Electroanal. Chem. Interfacial Electrochem. 191 1985 209 228
19. M. Seralathan, and S.K. Rangarajan Scheme of squares: Part III. The single and two square schemes J. Electroanal. Chem. Interfacial Electrochem. 191 1985 237 252
20. G. Balducci, and G. Costa The four-member square scheme in cyclic voltammetry: general solution for nernstian electron transfers J. Electroanal. Chem. 348 1993 355 365
21. A. Survila, and P.V. Stasiukaitis Linear potential sweep voltammetry of electroreduction of labile metal complexes - I. Background model Electrochim. Acta 42 1997 1113 1119
22. S.A. Lerke, D.H. Evans, and S.W. Feldberg Digital simulation of the square scheme in cyclic voltammetry. A comparison of methods J. Electroanal. Chem. 296 1990 299 315
23. M.T. García-Hernández, J. Castilla, C.F. González-Fernández, and J. Horno Application of the network method to simulation of a square scheme with Butler-Volmer charge transfer J. Electroanal. Chem. 424 1997 207 212
24. R.F.M.J. Cleven, H.G. De Jong, and H.P. Van Leeuwen Pulse polarography of metal/polyelectrolyte complexes and operation of the mean diffusion coefficient J. Electroanal. Chem. 202 1986 57 68
25. D.H. Evans Two-component diffusion with reaction in chronoamperometry. Approach to equilibrium conditions in the diffusion layer J. Electroanal. Chem. 324 1992 387 395
26. M. Aslanoglu, C.J. Isaac, A. Houlton, and B.R. Horrocks Voltammetric measurements of the interaction of metal complexes with nucleic acids Analyst 125 2000 1791 1798
27. G. Scatchard The attractions of proteins for small molecules and ions Ann. N.Y. Acad. Sci. 51 1949 660 672
28. B. Perlmutter-Hayman Cooperative binding to macromolecules. A formal approach Acc. Chem. Res. 19 1986 90 96
29. J.D. McGhee, and P.H. von Hippel Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice J. Mol. Biol. 86 1974 469 489
30. M.S. Rocha Revisiting the neighbor exclusion model and its applications Biopolymers 93 2010 1 7
31. D.H. Evans Multicomponent diffusion with chemical reactions and its effect in voltammetry J. Electroanal. Chem. 258 1989 451 456
32. H.P. Van Leeuwen, R. Cleven, and J. Buffle Voltammetric techniques for complexation measurements in natural aquatic media. Role of the size of macromolecular ligands and dissociation kinetics of complexes Pure Appl. Chem. 61 1989 255 274
33. C. de Haro, F. Berbel, J.M. Diaz-Cruz, C. Arino, and M. Esteban Voltammetric metal speciation in mixtures of inert and labile macromolecular complexes at any ligand-to-metal ratio: differential pulse polarographic study of the Zn(II)-nitrilotriacetate-polymethacrylate system J. Electroanal. Chem. 462 1999 157 173
34. A.J. Bard, and L.R. Faulkner Electrochemical Methods: Fundamentals and Applications 2001 Wiley New York
35. A. Bianchi, A. Domenech, E. Garcia-Espana, and S.V. Luis Electrochemical studies on anion coordination chemistry. Application of the molar-ratio method to competitive cyclic voltammetry Anal. Chem. 65 1993 3137 3142
36. A.D. McNaught, and A. Wilkinson IUPAC Compendium of Chemical Terminology second ed. 1997 Blackwell Science
37. A. Bard, G. Inzelt, and F. Scholz A.J. Bard, G. Inzelt, F. Scholz, Electrochemical Dictionary 2012 Springer Berlin, Heidelberg 518
38. H.G. De Jong, and H.P. Van Leeuwen Voltammetry of metal complex systems with different diffusion coefficients of the species involved. Part II. Behaviour of the limiting current and its dependence on association/dissociation kinetics and lability J. Electroanal. Chem. 234 1987 17 29
39. A. Doménech, E. Garcia-Espana, P. Navarro, and F. Reviriego Electrochemical determination of the stability of complexes formed by proton-ionizable ligands of 3,5-disubstituted 1H-pyrazole with phenethylamine Talanta 51 2000 625 636
40. A.B. Steel, T.M. Herne, and M.J. Tarlov Electrostatic interactions of redox cations with surface-immobilized and solution DNA Bioconjugate Chem. 10 1999 419 423
41. A. De Rache, I. Kejnovská, M. Vorlíčková, and C. Buess-Herman Elongated thrombin binding aptamer: a G-quadruplex cation-sensitive conformational switch Chem. A Eur. J. 18 2012 4392 4400
42. A. De Rache, T. Doneux, and C. Buess-Herman Electrochemical discrimination between G-quadruplex and duplex DNA Anal. Chem. 86 2014 8057 8065
43. 3+ and the G-quadruplex forming thrombin binding aptamer sequence J. Inorg. Biochem. 126 2013 84 90
44. I.M. Klotz, and D.L. Hunston Protein interactions with small molecules. Relationships between stoichiometric binding constants, site binding constants, and empirical binding parameters J. Biol. Chem. 250 1975 3001 3009