-
1
-
-
44449137093
-
The microbial engines that drive Earth's biogeochemical cycles
-
Falkowski PG, Fenchel T, Delong EF. The microbial engines that drive Earth's biogeochemical cycles. Science. 2008;320:1034-9.
-
(2008)
Science.
, vol.320
, pp. 1034-1039
-
-
Falkowski, P.G.1
Fenchel, T.2
Delong, E.F.3
-
2
-
-
1842560595
-
Tapping into microbial diversity
-
Keller M, Zengler K. Tapping into microbial diversity. Nat Rev Microbiol. 2004;2:141-50.
-
(2004)
Nat Rev Microbiol.
, vol.2
, pp. 141-150
-
-
Keller, M.1
Zengler, K.2
-
3
-
-
0011187460
-
Biodiversity of microbial life: foundation of earth's biosphere
-
New York: Wiley-Liss, Inc
-
Staley JT, Reysenbach AL. Biodiversity of microbial life: foundation of earth's biosphere. New York: Wiley-Liss, Inc; 2001.
-
(2001)
-
-
Staley, J.T.1
Reysenbach, A.L.2
-
5
-
-
0037052531
-
Global dispersal of free-living microbial eukaryote species
-
Finlay BJ. Global dispersal of free-living microbial eukaryote species. Science. 2002;296:1061-3.
-
(2002)
Science.
, vol.296
, pp. 1061-1063
-
-
Finlay, B.J.1
-
6
-
-
33646841490
-
Biogeography and dispersal of micro-organisms: a review emphasizing protists
-
Foissner W. Biogeography and dispersal of micro-organisms: a review emphasizing protists. Acta Protozool. 2006;45:111-36.
-
(2006)
Acta Protozool.
, vol.45
, pp. 111-136
-
-
Foissner, W.1
-
7
-
-
38649130641
-
Diversity and geographic distribution of ciliates (Protista: Ciliophora)
-
Foissner W, Chao A, Katz LA. Diversity and geographic distribution of ciliates (Protista: Ciliophora). Biodivers Conserv. 2008;17:345-63.
-
(2008)
Biodivers Conserv.
, vol.17
, pp. 345-363
-
-
Foissner, W.1
Chao, A.2
Katz, L.A.3
-
8
-
-
36849051889
-
DNA evidence for global dispersal and probable endemicity of protozoa
-
Bass D, Richards TA, Matthai L, Marsh V, Cavalier-Smith T. DNA evidence for global dispersal and probable endemicity of protozoa. BMC Evol Biol. 2007;7:162.
-
(2007)
BMC Evol Biol.
, vol.7
, pp. 162
-
-
Bass, D.1
Richards, T.A.2
Matthai, L.3
Marsh, V.4
Cavalier-Smith, T.5
-
9
-
-
10644260347
-
Spatial scaling of microbial eukaryote diversity
-
Green JL, Holmes AJ, Westoby M, Oliver I, Briscoe D, Dangerfield M, et al. Spatial scaling of microbial eukaryote diversity. Nature. 2004;432:747-50.
-
(2004)
Nature.
, vol.432
, pp. 747-750
-
-
Green, J.L.1
Holmes, A.J.2
Westoby, M.3
Oliver, I.4
Briscoe, D.5
Dangerfield, M.6
-
10
-
-
33747174849
-
Spatial scaling of microbial biodiversity
-
Green J, Bohannan BJ. Spatial scaling of microbial biodiversity. Trends Ecol Evol. 2006;21:501-7.
-
(2006)
Trends Ecol Evol.
, vol.21
, pp. 501-507
-
-
Green, J.1
Bohannan, B.J.2
-
11
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny JB, Bohannan BJ, Brown JH, Colwell RK, Fuhrmann JA, Green JL, et al. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol. 2006;4:102-12.
-
(2006)
Nat Rev Microbiol.
, vol.4
, pp. 102-112
-
-
Martiny, J.B.1
Bohannan, B.J.2
Brown, J.H.3
Colwell, R.K.4
Fuhrmann, J.A.5
Green, J.L.6
-
12
-
-
0037062470
-
Novel kingdom-level eukaryotic diversity in anoxic environments
-
Dawson SC, Pace NR. Novel kingdom-level eukaryotic diversity in anoxic environments. Proc Natl Acad Sci U S A. 2002;99:8324-9.
-
(2002)
Proc Natl Acad Sci U S A.
, vol.99
, pp. 8324-8329
-
-
Dawson, S.C.1
Pace, N.R.2
-
13
-
-
32344437178
-
A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples
-
Stoeck T, Hayward B, Taylor GT, Varela R, Epstein SS. A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist. 2006;157:31-43.
-
(2006)
Protist.
, vol.157
, pp. 31-43
-
-
Stoeck, T.1
Hayward, B.2
Taylor, G.T.3
Varela, R.4
Epstein, S.S.5
-
14
-
-
77951889917
-
Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
-
Medinger R, Nolte V, Pandey RV, Jost S, Ottenwälder B, Schlötterer C, et al. Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms. Mol Ecol. 2010;19:32-40.
-
(2010)
Mol Ecol.
, vol.19
, pp. 32-40
-
-
Medinger, R.1
Nolte, V.2
Pandey, R.V.3
Jost, S.4
Ottenwälder, B.5
Schlötterer, C.6
-
15
-
-
37749031255
-
Next-generation sequencing transforms today's biology
-
Schuster SC. Next-generation sequencing transforms today's biology. Nat Methods. 2008;5:16-8.
-
(2008)
Nat Methods.
, vol.5
, pp. 16-18
-
-
Schuster, S.C.1
-
16
-
-
84872840566
-
Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay
-
Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, et al. Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Mol Ecol. 2013;22:87-101.
-
(2013)
Mol Ecol.
, vol.22
, pp. 87-101
-
-
Bittner, L.1
Gobet, A.2
Audic, S.3
Romac, S.4
Egge, E.S.5
Santini, S.6
-
17
-
-
84897866461
-
Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context
-
Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, et al. Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context. Mol Biol Evol. 2014;31:993-1009.
-
(2014)
Mol Biol Evol.
, vol.31
, pp. 993-1009
-
-
Dunthorn, M.1
Otto, J.2
Berger, S.A.3
Stamatakis, A.4
Mahé, F.5
Romac, S.6
-
18
-
-
84898791782
-
Patterns of rare and abundant marine microbial eukaryotes
-
Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, et al. Patterns of rare and abundant marine microbial eukaryotes. Curr Biol. 2014;24:813-21.
-
(2014)
Curr Biol.
, vol.24
, pp. 813-821
-
-
Logares, R.1
Audic, S.2
Bass, D.3
Bittner, L.4
Boutte, C.5
Christen, R.6
-
19
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, et al. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci U S A. 2006;103:12115-20.
-
(2006)
Proc Natl Acad Sci U S A.
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
-
20
-
-
70749095743
-
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities
-
Stoeck T, Behnke A, Christen R, Amaral-Zettler L, Rodriguez-Mora MJ, Chistoserdov A, et al. Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities. BMC Biol. 2009;7:72.
-
(2009)
BMC Biol.
, vol.7
, pp. 72
-
-
Stoeck, T.1
Behnke, A.2
Christen, R.3
Amaral-Zettler, L.4
Rodriguez-Mora, M.J.5
Chistoserdov, A.6
-
21
-
-
77951908579
-
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
-
Stoeck T, Bass D, Nebel M, Christen R, Jones MD, Breiner HW, et al. Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol Ecol. 2010;19:21-31.
-
(2010)
Mol Ecol.
, vol.19
, pp. 21-31
-
-
Stoeck, T.1
Bass, D.2
Nebel, M.3
Christen, R.4
Jones, M.D.5
Breiner, H.W.6
-
22
-
-
77952625912
-
Short rDNA barcodes for species identification in Foraminifera
-
Pawlowski J, Lecroq B. Short rDNA barcodes for species identification in Foraminifera. J Eukaryot Microbiol. 2010;57:197-205.
-
(2010)
J Eukaryot Microbiol.
, vol.57
, pp. 197-205
-
-
Pawlowski, J.1
Lecroq, B.2
-
23
-
-
79551476785
-
Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
-
Behnke A, Engel M, Christen R, Nebel M, Klein RR, Stoeck T. Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions. Env Microb. 2010;13:340-9.
-
(2010)
Env Microb.
, vol.13
, pp. 340-349
-
-
Behnke, A.1
Engel, M.2
Christen, R.3
Nebel, M.4
Klein, R.R.5
Stoeck, T.6
-
24
-
-
84858702221
-
Comparing the hyper-variable V4 and V9 regions for assesment of ciliate environmental diversity
-
Dunthorn M, Klier J, Bunge J, Stoeck T. Comparing the hyper-variable V4 and V9 regions for assesment of ciliate environmental diversity. J Eukaryot Microbiol. 2012;59:185-7.
-
(2012)
J Eukaryot Microbiol.
, vol.59
, pp. 185-187
-
-
Dunthorn, M.1
Klier, J.2
Bunge, J.3
Stoeck, T.4
-
25
-
-
84928526705
-
Comparing high-throughput platforms for sequencing the V4 region of SSU-rDNA in environmental microbial eukaryotic diversity surveys
-
Mahé F, Mayor J, Bunge J, Chi J, Siemensmayer T, Stoeck T, et al. Comparing high-throughput platforms for sequencing the V4 region of SSU-rDNA in environmental microbial eukaryotic diversity surveys. J Euk Microbiol. 2014; doi:10.1111/jeu.12187.
-
(2014)
J Euk Microbiol
-
-
Mahé, F.1
Mayor, J.2
Bunge, J.3
Chi, J.4
Siemensmayer, T.5
Stoeck, T.6
-
26
-
-
84865089175
-
Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate Barcode marker
-
Stern RF, Andersen RA, Jameson I, Küpper FC, Coffroth MA, Vaulot D, et al. Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate Barcode marker. PLoS One. 2012;7:e42780.
-
(2012)
PLoS One.
, vol.7
, pp. e42780
-
-
Stern, R.F.1
Andersen, R.A.2
Jameson, I.3
Küpper, F.C.4
Coffroth, M.A.5
Vaulot, D.6
-
27
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, et al. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci U S A. 2012;109:6241-6.
-
(2012)
Proc Natl Acad Sci U S A.
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spouge, J.L.5
Levesque, C.A.6
-
28
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
Huse SM, Dethlefsen L, Huber JA, Welch DM, Relman DA, Sogin ML. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet. 2008;4:e1000255.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000255
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.A.3
Welch, D.M.4
Relman, D.A.5
Sogin, M.L.6
-
29
-
-
79955057814
-
Examining the global distribution of dominant archaeal populations in soil
-
Bates ST, Berg-Lyons D, Caporaso JG, Walters WA, Knight R, Fierer N. Examining the global distribution of dominant archaeal populations in soil. ISME J. 2010;5:908-17.
-
(2010)
ISME J.
, vol.5
, pp. 908-917
-
-
Bates, S.T.1
Berg-Lyons, D.2
Caporaso, J.G.3
Walters, W.A.4
Knight, R.5
Fierer, N.6
-
31
-
-
84868599126
-
Evolutionary analyses of non-genealogical bonds produced by introgressive descent
-
Bapteste E, Lopez P, Bouchard F, Baquero F, McInerney JO, Burian RM. Evolutionary analyses of non-genealogical bonds produced by introgressive descent. Proc Natl Acad Sci U S A. 2012;109:18266-72.
-
(2012)
Proc Natl Acad Sci U S A.
, vol.109
, pp. 18266-18272
-
-
Bapteste, E.1
Lopez, P.2
Bouchard, F.3
Baquero, F.4
McInerney, J.O.5
Burian, R.M.6
-
32
-
-
84861711272
-
Evolution of genetic diversity using networks: the human gut microbiome as a case study
-
Bapteste E, Bicep C, Lopez P. Evolution of genetic diversity using networks: the human gut microbiome as a case study. Clin Microbiol Infect. 2012;18:40-3.
-
(2012)
Clin Microbiol Infect.
, vol.18
, pp. 40-43
-
-
Bapteste, E.1
Bicep, C.2
Lopez, P.3
-
33
-
-
84880947338
-
Networks: expanding evolutionary thinking
-
Bapteste E, van Iersel L, Janke A, Kelchner S, Kelk S, McInerney JO, et al. Networks: expanding evolutionary thinking. Trends Genet. 2013;29:439-41.
-
(2013)
Trends Genet.
, vol.29
, pp. 439-441
-
-
Bapteste, E.1
Iersel, L.2
Janke, A.3
Kelchner, S.4
Kelk, S.5
McInerney, J.O.6
-
34
-
-
77955075362
-
Some considerations for analyzing biodiversity using integrative metagenomics and gene networks
-
Bittner L, Halary S, Payri C, Cruaud C, de Reviers B, Lopez P, et al. Some considerations for analyzing biodiversity using integrative metagenomics and gene networks. Biol Direct. 2010;5:47.
-
(2010)
Biol Direct.
, vol.5
, pp. 47
-
-
Bittner, L.1
Halary, S.2
Payri, C.3
Cruaud, C.4
Reviers, B.5
Lopez, P.6
-
35
-
-
84867742872
-
Targeted recovery of novel phylogenetic diversity from next-generation sequence data
-
Lynch MD, Bartram AK, Neufeld JD. Targeted recovery of novel phylogenetic diversity from next-generation sequence data. ISME J. 2012;6:2067-77.
-
(2012)
ISME J.
, vol.6
, pp. 2067-2077
-
-
Lynch, M.D.1
Bartram, A.K.2
Neufeld, J.D.3
-
36
-
-
84863920287
-
Microbial interactions: from networks to models
-
Faust K, Raes J. Microbial interactions: from networks to models. Nat Rev Microbiol. 2012;10:538-50.
-
(2012)
Nat Rev Microbiol.
, vol.10
, pp. 538-550
-
-
Faust, K.1
Raes, J.2
-
37
-
-
77954238817
-
A global network of coexisting microbes from environmental and whole-genome sequence data
-
Chaffron S, Rehrauer H, Pernthaler J, von Mering C. A global network of coexisting microbes from environmental and whole-genome sequence data. Genome Res. 2010;20:947-59.
-
(2010)
Genome Res.
, vol.20
, pp. 947-959
-
-
Chaffron, S.1
Rehrauer, H.2
Pernthaler, J.3
Mering, C.4
-
38
-
-
84864278347
-
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies
-
Atkinson HJ, Morris JH, Ferrin TE, Babbitt PC. Using sequence similarity networks for visualization of relationships across diverse protein superfamilies. PLoS One. 2009;4:e4345.
-
(2009)
PLoS One.
, vol.4
, pp. e4345
-
-
Atkinson, H.J.1
Morris, J.H.2
Ferrin, T.E.3
Babbitt, P.C.4
-
39
-
-
48249151749
-
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
-
Dagan T, Artzy-Randrup Y, Martin W. Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci U S A. 2008;105:10039-44.
-
(2008)
Proc Natl Acad Sci U S A.
, vol.105
, pp. 10039-10044
-
-
Dagan, T.1
Artzy-Randrup, Y.2
Martin, W.3
-
40
-
-
76249102181
-
Network analyses structure genetic diversity in independent genetic worlds
-
Halary S, Leigh JW, Cheaib B, Lopez P, Bapteste E. Network analyses structure genetic diversity in independent genetic worlds. Proc Natl Acad Sci U S A. 2010;107:127-32.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 127-132
-
-
Halary, S.1
Leigh, J.W.2
Cheaib, B.3
Lopez, P.4
Bapteste, E.5
-
41
-
-
84875578287
-
MosaicFinder: identification of fused gene families in sequence similarity networks
-
Jachiet PA, Pogorelcnik R, Berry A, Lopez P, Bapteste E. MosaicFinder: identification of fused gene families in sequence similarity networks. Bioinformatics. 2013;29:837-44.
-
(2013)
Bioinformatics.
, vol.29
, pp. 837-844
-
-
Jachiet, P.A.1
Pogorelcnik, R.2
Berry, A.3
Lopez, P.4
Bapteste, E.5
-
42
-
-
33846025119
-
Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems
-
Medini D, Covacci A, Donati C. Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems. PLoS Comp Biol. 2006;2:e173.
-
(2006)
PLoS Comp Biol.
, vol.2
, pp. e173
-
-
Medini, D.1
Covacci, A.2
Donati, C.3
-
43
-
-
44949207428
-
Sequence similarity network reveals common ancestry of multidomain proteins
-
Song N, Joseph JM, Davis GB, Durand D. Sequence similarity network reveals common ancestry of multidomain proteins. PLoS Comp Biol. 2008;4:e1000063.
-
(2008)
PLoS Comp Biol.
, vol.4
, pp. e1000063
-
-
Song, N.1
Joseph, J.M.2
Davis, G.B.3
Durand, D.4
-
44
-
-
79955456912
-
Performance, accuracy and web server evolutionary placement of short sequence reads under maximum likelihood
-
Berger SA, Krompass D, Stamatakis A. Performance, accuracy and web server evolutionary placement of short sequence reads under maximum likelihood. Syst Biol. 2011;60:291-302.
-
(2011)
Syst Biol.
, vol.60
, pp. 291-302
-
-
Berger, S.A.1
Krompass, D.2
Stamatakis, A.3
-
45
-
-
77958610660
-
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
-
Matsen FA, Kodner RB, Armbrust EV. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics. 2010;11:538.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 538
-
-
Matsen, F.A.1
Kodner, R.B.2
Armbrust, E.V.3
-
48
-
-
84925851544
-
Biodiversity of Marine Eukaryotes
-
Biodiversity of Marine Eukaryotes. http://biomarks.eu.
-
-
-
-
49
-
-
79960560895
-
Protistan microbial observatory in the Cariaco Basin: Caribbean I Pyrosequencing vs Sanger insights into species richness
-
Edgcomb V, Orsi W, Bunge J, Jeon S, Christen R, Leslin C, et al. Protistan microbial observatory in the Cariaco Basin: Caribbean I Pyrosequencing vs Sanger insights into species richness. ISME J. 2011;5:1344-56.
-
(2011)
ISME J.
, vol.5
, pp. 1344-1356
-
-
Edgcomb, V.1
Orsi, W.2
Bunge, J.3
Jeon, S.4
Christen, R.5
Leslin, C.6
-
50
-
-
79960558703
-
Protistan microbial observatory in the Cariaco Basin: Caribbean II Habitat specialization
-
Orsi W, Edgcomb V, Jeon S, Leslin C, Bunge J, Taylor GT, et al. Protistan microbial observatory in the Cariaco Basin: Caribbean II Habitat specialization. ISME J. 2011;5:1357-73.
-
(2011)
ISME J.
, vol.5
, pp. 1357-1373
-
-
Orsi, W.1
Edgcomb, V.2
Jeon, S.3
Leslin, C.4
Bunge, J.5
Taylor, G.T.6
-
51
-
-
84863986885
-
Effect of oxygen minimum zone formation on communities of marine protists
-
Orsi W, Song YC, Hallam S, Edgcomb V. Effect of oxygen minimum zone formation on communities of marine protists. ISME J. 2012;6:1586-601.
-
(2012)
ISME J.
, vol.6
, pp. 1586-1601
-
-
Orsi, W.1
Song, Y.C.2
Hallam, S.3
Edgcomb, V.4
-
52
-
-
84878308983
-
The species-rich assemblages of tintinnids (marine planktonic protists) are structured by mouth size
-
Dolan JR, Landry MR, Ritchie ME. The species-rich assemblages of tintinnids (marine planktonic protists) are structured by mouth size. ISME J. 2013;7:1237-43.
-
(2013)
ISME J.
, vol.7
, pp. 1237-1243
-
-
Dolan, J.R.1
Landry, M.R.2
Ritchie, M.E.3
-
53
-
-
84887188493
-
Diversity and distributions of Tintinnids
-
In: Dolan JR, Montagnes DJ, Agatha S, Coats DW, Stoecker DK, editors. 1st ed. Hoboken: Wiley-Blackwell
-
Dolan JR, Pierce RW. Diversity and distributions of Tintinnids. In: Dolan JR, Montagnes DJ, Agatha S, Coats DW, Stoecker DK, editors. The biology and ecology of Tintinnid ciliates: models for marine plankton. 1st ed. Hoboken: Wiley-Blackwell; 2013. p. 214-43.
-
(2013)
The biology and ecology of Tintinnid ciliates: models for marine plankton
, pp. 214-243
-
-
Dolan, J.R.1
Pierce, R.W.2
-
56
-
-
13944252976
-
A measure of betweenness centrality based on random walks
-
Newman ME. A measure of betweenness centrality based on random walks. Soc Netw. 2005;27:39-54.
-
(2005)
Soc Netw.
, vol.27
, pp. 39-54
-
-
Newman, M.E.1
-
57
-
-
33744745905
-
Marine microbial diversity: can it be determined
-
Pedrós-Alió C. Marine microbial diversity: can it be determined. Trends Microbiol. 2006;14:257-63.
-
(2006)
Trends Microbiol.
, vol.14
, pp. 257-263
-
-
Pedrós-Alió, C.1
-
58
-
-
84903908842
-
Ciliates and the rare biosphere: a review
-
Dunthorn M, Stoeck T, Clamp J, Warren A, Mahé F. Ciliates and the rare biosphere: a review. J Euk Microbiol. 2014;61:404-9.
-
(2014)
J Euk Microbiol.
, vol.61
, pp. 404-409
-
-
Dunthorn, M.1
Stoeck, T.2
Clamp, J.3
Warren, A.4
Mahé, F.5
-
59
-
-
84925865503
-
-
Figshare
-
Figshare. http://figshare.com.
-
-
-
-
60
-
-
84925858572
-
-
Novel ciliate diversity sequences (DNA). http://dx.doi.org/10.6084/m9.figshare.1266267.
-
-
-
-
61
-
-
84925844485
-
-
Novel ciliate diversity sequences (cDNA). http://dx.doi.org/10.6084/m9.figshare.1266266.
-
-
-
-
62
-
-
58249111615
-
Environmental rRNA inventories miss over half of protistan diversity
-
Jeon S, Bunge J, Leslin C, Stoeck T, Hong S, Epstein S. Environmental rRNA inventories miss over half of protistan diversity. BMC Microbiol. 2008;8:222.
-
(2008)
BMC Microbiol.
, vol.8
, pp. 222
-
-
Jeon, S.1
Bunge, J.2
Leslin, C.3
Stoeck, T.4
Hong, S.5
Epstein, S.6
-
63
-
-
33645216903
-
New algorithms for enumerating all maximal cliques
-
In: Hagerup T, Katajainen J, editors. Algorithm theory-SWAT 2004: 8-10 July 2004; Humlebæk. Berlin, Heidelberg: Springer Verlag
-
Makino K, Uno T. New algorithms for enumerating all maximal cliques. In: Hagerup T, Katajainen J, editors. Algorithm theory-SWAT 2004: 8-10 July 2004; Humlebæk. Berlin, Heidelberg: Springer Verlag; 2004. p. 260-72.
-
(2004)
, pp. 260-272
-
-
Makino, K.1
Uno, T.2
-
64
-
-
80051508754
-
Global diversity of aloricate Oligotrichea (Protista, Ciliophora, Spirotricha) in marine and brackish sea water
-
Agatha S. Global diversity of aloricate Oligotrichea (Protista, Ciliophora, Spirotricha) in marine and brackish sea water. PLoS One. 2011;6:e22466.
-
(2011)
PLoS One.
, vol.6
, pp. e22466
-
-
Agatha, S.1
-
65
-
-
84863529834
-
Diversity and endemism of ciliates inhabiting neotropical phytotelmata
-
Dunthorn M, Stoeck T, Wolf K, Breiner HW, Foissner W. Diversity and endemism of ciliates inhabiting neotropical phytotelmata. Syst Biodivers. 2012;10:195-205.
-
(2012)
Syst Biodivers.
, vol.10
, pp. 195-205
-
-
Dunthorn, M.1
Stoeck, T.2
Wolf, K.3
Breiner, H.W.4
Foissner, W.5
-
66
-
-
84869128525
-
Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities
-
Forster D, Behnke A, Stoeck T. Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities. Syst Biodivers. 2012;10:277-88.
-
(2012)
Syst Biodivers.
, vol.10
, pp. 277-288
-
-
Forster, D.1
Behnke, A.2
Stoeck, T.3
-
68
-
-
0018913458
-
Distribution of oxygen in marine sediments, measured with microelectrodes
-
Revsbech NP, Sørensen J, Blackburn H, Lomholt JP. Distribution of oxygen in marine sediments, measured with microelectrodes. Limnol Oceanog. 1980;25:403-11.
-
(1980)
Limnol Oceanog.
, vol.25
, pp. 403-411
-
-
Revsbech, N.P.1
Sørensen, J.2
Blackburn, H.3
Lomholt, J.P.4
-
69
-
-
34250321989
-
Does size matter for dispersal distance?
-
Jenkins DG, Brescacin CR, Duxbury CV, Elliott JA, Evans JA, Grablow KR, et al. Does size matter for dispersal distance? Global Ecol Biogeogr. 2007;16:415-25.
-
(2007)
Global Ecol Biogeogr.
, vol.16
, pp. 415-425
-
-
Jenkins, D.G.1
Brescacin, C.R.2
Duxbury, C.V.3
Elliott, J.A.4
Evans, J.A.5
Grablow, K.R.6
-
70
-
-
2442551475
-
The importance of physical isolation to microbial diversification
-
Papke RT, Ward DM. The importance of physical isolation to microbial diversification. FEMS Microbiol Ecol. 2004;48:293-303.
-
(2004)
FEMS Microbiol Ecol.
, vol.48
, pp. 293-303
-
-
Papke, R.T.1
Ward, D.M.2
-
72
-
-
84875249654
-
Evidence for a persistent microbial seed bank throughout the global ocean
-
Gibbons SM, Caporaso JG, Pirrung M, Field D, Knight R, Gilbert JA. Evidence for a persistent microbial seed bank throughout the global ocean. Proc Natl Acad Sci U S A. 2013;110:4651-5.
-
(2013)
Proc Natl Acad Sci U S A.
, vol.110
, pp. 4651-4655
-
-
Gibbons, S.M.1
Caporaso, J.G.2
Pirrung, M.3
Field, D.4
Knight, R.5
Gilbert, J.A.6
-
73
-
-
34548737680
-
Feast and famine - microbial life in the deep-sea bed
-
Jørgensen BB, Boetius A. Feast and famine - microbial life in the deep-sea bed. Nat Rev Microbiol. 2007;5:770-81.
-
(2007)
Nat Rev Microbiol.
, vol.5
, pp. 770-781
-
-
Jørgensen, B.B.1
Boetius, A.2
-
74
-
-
84872127373
-
Do microbes have macroecology? Largescale patterns in the diversity and distribution of marine benthic ciliates
-
Azovsky A, Mazei Y. Do microbes have macroecology? Largescale patterns in the diversity and distribution of marine benthic ciliates. Global Ecol Biogeogr. 2013;22:163-72.
-
(2013)
Global Ecol Biogeogr.
, vol.22
, pp. 163-172
-
-
Azovsky, A.1
Mazei, Y.2
-
75
-
-
76249134266
-
Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor
-
Scheckenbach F, Hausmann K, Wylezich C, Weitere M, Arndt H. Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor. Proc Natl Acad Sci U S A. 2010;107:115-20.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 115-120
-
-
Scheckenbach, F.1
Hausmann, K.2
Wylezich, C.3
Weitere, M.4
Arndt, H.5
-
76
-
-
33745316278
-
Biogeography
-
3rd ed. Sunderland: Sinauer Associates, Inc
-
Lomolino MV, Riddle BR, Brown JH. Biogeography. 3rd ed. Sunderland: Sinauer Associates, Inc; 2006.
-
(2006)
-
-
Lomolino, M.V.1
Riddle, B.R.2
Brown, J.H.3
-
77
-
-
84925875065
-
-
V4 ciliate sequence dataset. http://dx.doi.org/10.6084/m9.figshare.1263932.
-
-
-
-
78
-
-
84925865369
-
Supporting information to V4 ciliate sequences dataset
-
Supporting information to V4 ciliate sequences dataset. http://dx.doi.org/10.6084/m9.figshare.1264009.
-
-
-
-
79
-
-
84925871016
-
Manual for deposited files
-
Manual for deposited files. http://dx.doi.org/10.6084/m9.figshare.1264013.
-
-
-
-
80
-
-
84880032922
-
EGN: a wizard for construction of gene and genome similarity networks
-
Halary S, McInerney JO, Lopez P, Bapteste E. EGN: a wizard for construction of gene and genome similarity networks. BMC Evol Biol. 2013;13:146.
-
(2013)
BMC Evol Biol.
, vol.13
, pp. 146
-
-
Halary, S.1
McInerney, J.O.2
Lopez, P.3
Bapteste, E.4
-
81
-
-
84925849021
-
Network analyses input file
-
Network analyses input file. http://dx.doi.org/10.6084/m9.figshare.1263925.
-
-
-
-
82
-
-
85166916238
-
Gephi: an open source software for exploring and manipulating networks
-
Bastian M, Heymann S, Jacomy M. Gephi: an open source software for exploring and manipulating networks. ICWSM. 2009;8:361-2. http://gephi.github.io/.
-
(2009)
ICWSM
, vol.8
, pp. 361-362
-
-
Bastian, M.1
Heymann, S.2
Jacomy, M.3
-
83
-
-
43349094507
-
The igraph software package for complex network research
-
Csárdi G, Nepusz T. The igraph software package for complex network research. InterJournal Complex Systems. 2006;1695:1-9.
-
(2006)
InterJournal Complex Systems.
, vol.1695
, pp. 1-9
-
-
Csárdi, G.1
Nepusz, T.2
-
84
-
-
84925843176
-
-
The R project for statistical computing. http://R-project.org.
-
-
-
-
85
-
-
33344464667
-
Measurement of diversity
-
Simpson EH. Measurement of diversity. Nature. 1949;163:688.
-
(1949)
Nature.
, vol.163
, pp. 688
-
-
Simpson, E.H.1
|