Detection of novel polyomaviruses in fruit bats in Indonesia

Archives of Virology

Volumn 160, Issue 4, 2015, Pages 1075-1082

  Kobayashi, Shintaro ^a   Sasaki, Michihito ^a   Nakao, Ryo ^a   Setiyono, Agus ^b   Handharyani, Ekowati ^b   Orba, Yasuko ^a   Rahmadani, Ibnu ^c   Taha, Siswatiana ^d   Adiani, Sri ^e   Subangkit, Mawar ^b   Nakamura, Ichiro ^a   Kimura, Takashi ^f   Sawa, Hirofumi ^a,g  

^a HOKKAIDO UNIVERSITY   (Japan)

^b BOGOR AGRICULTURAL UNIVERSITY   (Indonesia)

^c Veterinary Investigation and Diagnostic Center   (Indonesia)

^d GORONTALO STATE UNIVERSITY   (Indonesia)

^e SAM RATULANGI UNIVERSITY   (Indonesia)

^f HOKKAIDO UNIVERSITY   (Japan)

^g Global Virus Network   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

ANIMAL; BAT; CLASSIFICATION; DISEASE CARRIER; GENETICS; HUMAN; INDONESIA; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYOMAVIRUS; SPLEEN; VIROLOGY; VIRUS GENOME;

ANIMALS; BASE SEQUENCE; CHIROPTERA; DISEASE RESERVOIRS; GENOME, VIRAL; HUMANS; INDONESIA; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYOMAVIRUS; SPLEEN; VIRAL PROTEINS;

EID: 84925487962     PISSN: 03048608     EISSN: 14328798     Source Type: Journal    
DOI: 10.1007/s00705-015-2349-7     Document Type: Article

References (24)

1. Almeida FC, Giannini NP, DeSalle R, Simmons NB (2011) Evolutionary relationships of the old world fruit bats (Chiroptera, Pteropodidae): another star phylogeny? BMC Evol Biol 11:281
2. Brunak S, Engelbrecht J, Knudsen S (1991) Prediction of human mRNA donor and acceptor sites from the DNA sequence. J Mol Biol 220:49–65
3. Fagrouch Z, Sarwari R, Lavergne A, Delaval M, de Thoisy B, Lacoste V, Verschoor EJ (2012) Novel polyomaviruses in South American bats and their relationship to other members of the family Polyomaviridae. J Gen Virol 93:2652–2657
4. Halpin K, Young PL, Field HE, Mackenzie JS (2000) Isolation of Hendra virus from pteropid bats: a natural reservoir of Hendra virus. J Gen Virol 81:1927–1932
5. Hebsgaard SM, Korning PG, Tolstrup N, Engelbrecht J, Rouzé P, Brunak S (1996) Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information. Nucleic Acids Res 24:3439–3452
6. Johne R, Enderlein D, Nieper H, Müller H (2005) Novel polyomavirus detected in the feces of a chimpanzee by nested broad-spectrum PCR. J Virol 79:3883–3887
7. Johne R, Buck CB, Allander T, Atwood WJ, Garcea RL, Imperiale MJ, Major EO, Ramqvist T, Norkin LC (2011) Taxonomical developments in the family Polyomaviridae. Arch Virol 156:1627–1634
8. Johnson EM (2010) Structural evaluation of new human polyomaviruses provides clues to pathobiology. Trends Microbiol 18:215–223
9. Kazem S, van der Meijden E, Kooijman S, Rosenberg AS, Hughey LC, Browning JC, Sadler G, Busam K, Pope E, Benoit T, Fleckman P, de Vries E, Eekhof JA, Feltkamp MC (2012) Trichodysplasia spinulosa is characterized by active polyomavirus infection. J Clin Virol 53:225–230
10. Khalili K, Stoner GL (2004) Human polyomaviruses: molecular and clinical perspectives. Wiley, New York
11. King AMQ, Adams MJ, Lefkowitz EJ, Carstens EB (2012) Virus taxonomy: classification and nomenclature of viruses: Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier
12. Lau SK, Woo PC, Li KS, Huang Y, Tsoi HW, Wong BH, Wong SS, Leung SY, Chan KH, Yuen KY (2005) Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. Proc Natl Acad Sci USA 102:14040–14045
13. Leendertz FH, Scuda N, Cameron KN, Kidega T, Zuberbühler K, Leendertz SA, Couacy-Hymann E, Boesch C, Calvignac S, Ehlers B (2011) African great apes are naturally infected with polyomaviruses closely related to Merkel cell polyomavirus. J Virol 85:916–924
14. Luby SP, Rahman M, Hossain MJ, Blum LS, Husain MM, Gurley E, Khan R, Ahmed BN, Rahman S, Nahar N, Kenah E, Comer JA, Ksiazek TG (2006) Foodborne transmission of Nipah virus, Bangladesh. Emerg Infect Dis 12:1888–1894
15. Misra V, Dumonceaux T, Dubois J, Willis C, Nadin-Davis S, Severini A, Wandeler A, Lindsay R, Artsob H (2009) Detection of polyoma and corona viruses in bats of Canada. J Gen Virol 90:2015–2022
16. Orba Y, Kobayashi S, Nakamura I, Ishii A, Hang’ombe BM, Mweene AS, Thomas Y, Kimura T, Sawa H (2011) Detection and characterization of a novel polyomavirus in wild rodents. J Gen Virol 92:789–795
17. Reese MG, Eeckman FH, Kulp D, Haussler D (1997) Improved splice site detection in Genie. J Comput Biol 4:311–323
18. Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539–542
19. Sasaki M, Setiyono A, Handharyani E, Rahmadani I, Taha S, Adiani S, Subangkit M, Sawa H, Nakamura I, Kimura T (2012) Molecular detection of a novel paramyxovirus in fruit bats from Indonesia. Virol J 9:240
20. Scuda N, Hofmann J, Calvignac-Spencer S, Ruprecht K, Liman P, Kühn J, Hengel H, Ehlers B (2011) A novel human polyomavirus closely related to the african green monkey-derived lymphotropic polyomavirus. J Virol 85:4586–4590
21. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
22. Tao Y, Shi M, Conrardy C, Kuzmin IV, Recuenco S, Agwanda B, Alvarez DA, Ellison JA, Gilbert AT, Moran D, Niezgoda M, Lindblade KA, Holmes EC, Breiman RF, Rupprecht CE, Tong S (2013) Discovery of diverse polyomaviruses in bats and the evolutionary history of the Polyomaviridae. J Gen Virol 94:738–748
23. van der Meijden E, Janssens RW, Lauber C, Bouwes Bavinck JN, Gorbalenya AE, Feltkamp MC (2010) Discovery of a new human polyomavirus associated with trichodysplasia spinulosa in an immunocompromized patient. PLoS Pathog 6:e1001024
24. Yamaguchi H, Kobayashi S, Ishii A, Ogawa H, Nakamura I, Moonga L, Hang’ombe BM, Mweene AS, Thomas Y, Kimura T, Sawa H, Orba Y (2013) Identification of a novel polyomavirus from vervet monkeys in Zambia. J Gen Virol 94:1357–1364