Probabilistic models to describe the dynamics of migrating microbial communities

PLoS ONE

Volumn 10, Issue 3, 2015, Pages

  Schroeder, Joanna L ^a,c   Lunn, Mary ^a   Pinto, Ameet J ^a   Raskin, Lutgarde ^b   Sloan, William T ^a  

^a UNIVERSITY OF GLASGOW   (United Kingdom)

^b UNIVERSITY OF MICHIGAN   (United States)

^c THE LABORATORY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DRINKING WATER;

ARTICLE; BACTERIAL CELL; BACTERIAL TRANSLOCATION; BIOFILM; CELL COUNT; INTERMETHOD COMPARISON; LIQUID; MICROBIAL POPULATION DYNAMICS; POPULATION ABUNDANCE; SIMULATION; SPECIES COMPOSITION; STATISTICAL MODEL; ALGORITHM; MICROBIOLOGY;

ALGORITHMS; ENVIRONMENTAL MICROBIOLOGY; MODELS, STATISTICAL;

EID: 84925397667     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0117221     Document Type: Article

References (22)

1. Vellend M (2010) Conceptual synthesis in community ecology. The Quarterly Review of Biology 85: 183-206. doi: 10.1086/652373 PMID: 20565040
2. Ottesen EA, Young CR, Eppley JM, Ryan JP, Chavez FP, et al. (2013) Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences 110: 488-497. doi: 10.1073/pnas.1222099110
3. Martin AP, Zubkov MV, Burkill PH, Holland RJ (2005) Extreme spatial variability in marine picoplankton and its consequences for interpreting eulerian time-series. Biology Letters 1: 366-369. doi: 10.1098/rsbl.2005.0316 PMID: 17148208
4. Pinto A, Xi C, Raskin L (2012) Bacterial community structure in the drinking water microbiome is governed by filtration processes. Environmental Science & Technology 46: 8851-8859. doi: 10.1021/es302042t
5. Xavier JB, Picioreanu C, Van Loosdrecht M (2005) A framework for multidimensional modelling of activity and structure of multispecies biofilms. Environmental Microbiology 7: 1085-1103. doi: 10.1111/j.1462-2920.2005.00787.x PMID: 16011747
6. Henne K, Kahlisch L, Brettar I, Höfle M (2012) Analysis of structure and composition of bacterial core communities in mature drinking water biofilms and bulk water of a citywide network in germany. Applied and Environmental Microbiology 78: 3530-3538. doi: 10.1128/AEM.06373-11 PMID: 22389373
7. Hubbell SP (2000) A Unified Neutral Theory of Biodiversity and Biogeography. Nature Publishing Group.
8. Woodcock S, van der Gast C, Bell T, Lunn M, Curtis T, et al. (2007) Neutral assembly of bacterial communities. FEMS Microbiol Ecol 62: 171-180. doi: 10.1111/j.1574-6941.2007.00379.x PMID: 17937674
9. Warren P (2010) Biodiversity on island chains: neutral model simulations. Physical Review E 82: 051922. doi: 10.1103/PhysRevE.82.051922
10. Economo E, Keitt T (2008) Species diversity in neutral metacommunities: a network approach. Ecology Letters 11: 52-62. PMID: 18021244
11. Ofiteru I, Lunn M, Curtis T, Wells G, Criddle C, et al. (2010) Combined niche and neutral effects in a microbial wastewater treatment community. Proceedings of the National Academy of Sciences 107: 15345-15350. doi: 10.1073/pnas.1000604107
12. Sloan W, Lunn M, Woodcock S, Head I, Nee S, et al. (2005) Quantifying the roles of immigration and chance in shaping prokaryote community structure. Environmental Microbiology 8: 732-740. doi: 10.1111/j.1462-2920.2005.00956.x
13. Halliday E, McLellan SL, Amaral-Zettler LA, Sogin ML, Gast RJ (2014) Comparison of bacterial communities in sands and water at beaches with bacterial water quality violations. PLoS ONE 9: e90815. doi: 10.1371/journal.pone.0090815 PMID: 24599478
14. Martiny AC, Albrechtsen HJ, Arvin E, Molin S (2005) Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with nitrospira spp. Applied and Environmental Microbiology 71: 8611-8617. doi: 10.1128/AEM.71.12.8611-8617.2005 PMID: 16332854
15. Besemer K, Peter H, Logue JB, Langenheder S, Lindström ES, et al. (2012) Unraveling assembly of stream biofilm communities. The ISME Journal 6: 1459-1468. doi: 10.1038/ismej.2011.205 PMID: 22237539
16. Douterelo I, Sharpe R, Boxall J (2013) Influence of hydraulic regimes on bacterial community structure and composition in an experimental drinking water distribution system. Water Research 47: 503-516. doi: 10.1016/j.watres.2012.09.053 PMID: 23182667
17. Escobar IC, Randall AA, Taylor JS (2001) Bacterial growth in distribution systems: effect of assimilable organic carbon and biodegradable dissolved organic carbon. Environmental Science & Technology 35: 3442-3447. doi: 10.1021/es0106669
18. Stephenson D, Stephenson T (1992) Bioaugmentation for enhancing biological wastewater treatment. Biotechnology advances 10: 549-559. doi: 10.1016/0734-9750(92)91452-K PMID: 14543705
19. El Fantroussi S, Agathos SN (2005) Is bioaugmentation a feasible strategy for pollutant removal and site remediation? Current Opinion in Microbiology 8: 268-275. doi: 10.1016/j.mib.2005.04.011 PMID: 15939349
20. Bakken JS, Borody T, Brandt LJ, Brill JV, Demarco DC, et al. (2011) Treating¡ i¿ clostridium difficile¡ i¿ infection with fecal microbiota transplantation. Clinical Gastroenterology and Hepatology 9: 1044-1049. doi: 10.1016/j.cgh.2011.08.014 PMID: 21871249
21. Wimpenny J, Manz W, Szewzyk U (2000) Heterogeneity in biofilms. FEMS Microbiology Reviews 24: 661-671. doi: 10.1111/j.1574-6976.2000.tb00565.x PMID: 11077157
22. Besemer K, Singer G, Quince C, Bertuzzo E, Sloan W, et al. (2013) Headwaters are critical reservoirs of microbial diversity for fluvial networks. Proceedings of the Royal Society B: Biological Sciences 280: 20131760. doi: 10.1098/rspb.2013.1760 PMID: 24089333