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Volumn 197, Issue 7, 2015, Pages 1221-1235

Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; T BOX TRANSCRIPTION FACTOR; BACTERIAL DNA; PROTEIN BINDING; VPSR PROTEIN, VIBRIO CHOLERAE;

EID: 84924674555     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.02439-14     Document Type: Article
Times cited : (63)

References (61)
  • 1
  • 2
    • 80052460724 scopus 로고    scopus 로고
    • Cholera in the 21st century
    • Charles RC, Ryan ET. 2011. Cholera in the 21st century. Curr Opin Infect Dis 24:472-477. http://dx.doi.org/10.1097/QCO.0b013e32834a88af.
    • (2011) Curr Opin Infect Dis , vol.24 , pp. 472-477
    • Charles, R.C.1    Ryan, E.T.2
  • 3
    • 0031792685 scopus 로고    scopus 로고
    • Epidemiology, genetics, and ecology of toxigenic Vibrio cholerae
    • Faruque SM, Albert MJ, Mekalanos JJ. 1998. Epidemiology, genetics, and ecology of toxigenic Vibrio cholerae. Microbiol Mol Biol Rev 62:1301-1314.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 1301-1314
    • Faruque, S.M.1    Albert, M.J.2    Mekalanos, J.J.3
  • 5
    • 34247365457 scopus 로고    scopus 로고
    • Biofilm acts as a microenvironment for plankton-associated Vibrio cholerae in the aquatic environment of Bangladesh
    • Islam MS, Jahid MIK, Rahman MM, Rahman MZ, Islam MS, Kabir MS, Sack DA, Schoolnik GK. 2007. Biofilm acts as a microenvironment for plankton-associated Vibrio cholerae in the aquatic environment of Bangladesh. Microbiol Immunol 51:369-379. http://dx.doi.org/10.1111/j.1348-0421.2007.tb03924.x.
    • (2007) Microbiol Immunol , vol.51 , pp. 369-379
    • Islam, M.S.1    Jahid, M.I.K.2    Rahman, M.M.3    Rahman, M.Z.4    Islam, M.S.5    Kabir, M.S.6    Sack, D.A.7    Schoolnik, G.K.8
  • 6
    • 0031082112 scopus 로고    scopus 로고
    • Attachment of Vibrio cholerae under various environmental conditions and to selected substrates
    • Hood M, Winter P. 2006. Attachment of Vibrio cholerae under various environmental conditions and to selected substrates. FEMS Microbiol Ecol 22:215-223. http://dx.doi.org/10.1111/j.1574-6941.1997.tb00373.x.
    • (2006) FEMS Microbiol Ecol , vol.22 , pp. 215-223
    • Hood, M.1    Winter, P.2
  • 8
    • 0021201015 scopus 로고
    • Influence of water temperature, salinity, and pH on survival and growth of toxigenic Vibrio cholerae serovar O1 associated with live copepods in laboratory microcosms
    • Huq A, West PA, Small EB, Huq MI, Colwell RR. 1984. Influence of water temperature, salinity, and pH on survival and growth of toxigenic Vibrio cholerae serovar O1 associated with live copepods in laboratory microcosms. Appl Environ Microbiol 48:420-424.
    • (1984) Appl Environ Microbiol , vol.48 , pp. 420-424
    • Huq, A.1    West, P.A.2    Small, E.B.3    Huq, M.I.4    Colwell, R.R.5
  • 11
    • 33646594449 scopus 로고    scopus 로고
    • Transmissibility of cholera: in vivo-formed biofilms and their relationship to infectivity and persistence in the environment
    • Faruque SM, Biswas K, Udden SMN, Ahmad QS, Sack DA, Nair GB, Mekalanos JJ. 2006. Transmissibility of cholera: in vivo-formed biofilms and their relationship to infectivity and persistence in the environment. Proc Natl Acad Sci USA 103:6350-6355. http://dx.doi.org/10.1073/pnas.0601277103.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6350-6355
    • Faruque, S.M.1    Biswas, K.2    Udden, S.M.N.3    Ahmad, Q.S.4    Sack, D.A.5    Nair, G.B.6    Mekalanos, J.J.7
  • 12
    • 0033616585 scopus 로고    scopus 로고
    • Vibrio cholerae O1 El Tor: identification of a gene cluster required for the rugose colony type, exopolysaccharide production, chlorine resistance, and biofilm formation
    • Yildiz FH, Schoolnik GK. 1999. Vibrio cholerae O1 El Tor: identification of a gene cluster required for the rugose colony type, exopolysaccharide production, chlorine resistance, and biofilm formation. Proc Natl Acad Sci USA 96:4028-4033. http://dx.doi.org/10.1073/pnas.96.7.4028.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 4028-4033
    • Yildiz, F.H.1    Schoolnik, G.K.2
  • 13
    • 84899878624 scopus 로고    scopus 로고
    • Structural characterization of the extracellular polysaccharide from Vibrio cholerae O1 El-Tor
    • Yildiz F, Fong J, Sadovskaya I, Grard T, Vinogradov E. 2014. Structural characterization of the extracellular polysaccharide from Vibrio cholerae O1 El-Tor. PLoS One 9:e86751. http://dx.doi.org/10.1371/journal.pone.0086751.
    • (2014) PLoS One , vol.9
    • Yildiz, F.1    Fong, J.2    Sadovskaya, I.3    Grard, T.4    Vinogradov, E.5
  • 14
    • 31344435869 scopus 로고    scopus 로고
    • Identification and characterization of RbmA, a novel protein required for the development of rugose colony morphology and biofilm structure in Vibrio cholerae
    • Fong JCN, Karplus K, Schoolnik GK, Yildiz FH. 2006. Identification and characterization of RbmA, a novel protein required for the development of rugose colony morphology and biofilm structure in Vibrio cholerae. J Bacteriol 188:1049-1059. http://dx.doi.org/10.1128/JB.188.3.1049-1059.2006.
    • (2006) J Bacteriol , vol.188 , pp. 1049-1059
    • Fong, J.C.N.1    Karplus, K.2    Schoolnik, G.K.3    Yildiz, F.H.4
  • 15
    • 33947122068 scopus 로고    scopus 로고
    • The rbmBCDEF gene cluster modulates development of rugose colony morphology and biofilm formation in Vibrio cholerae
    • Fong JCN, Yildiz FH. 2007. The rbmBCDEF gene cluster modulates development of rugose colony morphology and biofilm formation in Vibrio cholerae. J Bacteriol 189:2319-2330. http://dx.doi.org/10.1128/JB.01569-06.
    • (2007) J Bacteriol , vol.189 , pp. 2319-2330
    • Fong, J.C.N.1    Yildiz, F.H.2
  • 16
    • 25144431855 scopus 로고    scopus 로고
    • Identification of novel stage-specific genetic requirements through whole genome transcription profiling of Vibrio cholerae biofilm development
    • Moorthy S, Watnick PI. 2005. Identification of novel stage-specific genetic requirements through whole genome transcription profiling of Vibrio cholerae biofilm development. Mol Microbiol 57:1623-1635. http://dx.doi.org/10.1111/j.1365-2958.2005.04797.x.
    • (2005) Mol Microbiol , vol.57 , pp. 1623-1635
    • Moorthy, S.1    Watnick, P.I.2
  • 17
    • 80052313373 scopus 로고    scopus 로고
    • A communal bacterial adhesin anchors biofilm and bystander cells to surfaces
    • Absalon C, Van Dellen K, Watnick PI. 2011. A communal bacterial adhesin anchors biofilm and bystander cells to surfaces. PLoS Pathog 7:e1002210. http://dx.doi.org/10.1371/journal.ppat.1002210.
    • (2011) PLoS Pathog , vol.7
    • Absalon, C.1    Van Dellen, K.2    Watnick, P.I.3
  • 19
    • 77956366219 scopus 로고    scopus 로고
    • Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesis
    • Fong JCN, Syed KA, Klose KE, Yildiz FH. 2010. Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesis. Microbiology 156:2757-2769. http://dx.doi.org/10.1099/mic.0.040196-0.
    • (2010) Microbiology , vol.156 , pp. 2757-2769
    • Fong, J.C.N.1    Syed, K.A.2    Klose, K.E.3    Yildiz, F.H.4
  • 20
    • 3843069972 scopus 로고    scopus 로고
    • Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation
    • Tischler AD, Camilli A. 2004. Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation. Mol Microbiol 53:857-869. http://dx.doi.org/10.1111/j.1365-2958.2004.04155.x.
    • (2004) Mol Microbiol , vol.53 , pp. 857-869
    • Tischler, A.D.1    Camilli, A.2
  • 21
    • 33646575898 scopus 로고    scopus 로고
    • Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level
    • Beyhan S, Tischler AD, Camilli A, Yildiz FH. 2006. Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level. J Bacteriol 188:3600-3613. http://dx.doi.org/10.1128/JB.188.10.3600-3613.2006.
    • (2006) J Bacteriol , vol.188 , pp. 3600-3613
    • Beyhan, S.1    Tischler, A.D.2    Camilli, A.3    Yildiz, F.H.4
  • 22
    • 33846616323 scopus 로고    scopus 로고
    • Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signalling pathway
    • Beyhan S, Yildiz FH. 2007. Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signalling pathway. Mol Microbiol 63:995-1007. http://dx.doi.org/10.1111/j.1365-2958.2006.05568.x.
    • (2007) Mol Microbiol , vol.63 , pp. 995-1007
    • Beyhan, S.1    Yildiz, F.H.2
  • 23
    • 0035114220 scopus 로고    scopus 로고
    • VpsR, a member of the response regulators of the two-component regulatory systems, is required for expression of vps biosynthesis genes and EPS(ETr)-associated phenotypes in Vibrio cholerae O1 El Tor
    • Yildiz FH, Dolganov NA, Schoolnik GK. 2001. VpsR, a member of the response regulators of the two-component regulatory systems, is required for expression of vps biosynthesis genes and EPS(ETr)-associated phenotypes in Vibrio cholerae O1 El Tor. J Bacteriol 183:1716-1726. http://dx.doi.org/10.1128/JB.183.5.1716-1726.2001.
    • (2001) J Bacteriol , vol.183 , pp. 1716-1726
    • Yildiz, F.H.1    Dolganov, N.A.2    Schoolnik, G.K.3
  • 24
    • 1342325445 scopus 로고    scopus 로고
    • VpsT is a transcriptional regulator required for expression of vps biosynthesis genes and the development of rugose colonial morphology in Vibrio cholerae O1 El Tor
    • Casper-Lindley C, Yildiz FH. 2004. VpsT is a transcriptional regulator required for expression of vps biosynthesis genes and the development of rugose colonial morphology in Vibrio cholerae O1 El Tor. J Bacteriol 186: 1574-1578. http://dx.doi.org/10.1128/JB.186.5.1574-1578.2004.
    • (2004) J Bacteriol , vol.186 , pp. 1574-1578
    • Casper-Lindley, C.1    Yildiz, F.H.2
  • 25
    • 76749083886 scopus 로고    scopus 로고
    • Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP
    • Krasteva PV, Fong JCN, Shikuma NJ, Beyhan S, Navarro MVAS, Yildiz FH, Sondermann H. 2010. Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP. Science 327:866-868. http://dx.doi.org/10.1126/science.1181185.
    • (2010) Science , vol.327 , pp. 866-868
    • Krasteva, P.V.1    Fong, J.C.N.2    Shikuma, N.J.3    Beyhan, S.4    Navarro, M.V.A.S.5    Yildiz, F.H.6    Sondermann, H.7
  • 26
    • 80655125443 scopus 로고    scopus 로고
    • Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae
    • Srivastava D, Harris RC, Waters CM. 2011. Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae. J Bacteriol 193:6331-6341. http://dx.doi.org/10.1128/JB.05167-11.
    • (2011) J Bacteriol , vol.193 , pp. 6331-6341
    • Srivastava, D.1    Harris, R.C.2    Waters, C.M.3
  • 27
    • 3242884444 scopus 로고    scopus 로고
    • Molecular analysis of rugosity in a Vibrio cholerae O1 El Tor phase variant
    • Yildiz FH, Liu XS, Heydorn A, Schoolnik GK. 2004. Molecular analysis of rugosity in a Vibrio cholerae O1 El Tor phase variant. Mol Microbiol 53:497-515. http://dx.doi.org/10.1111/j.1365-2958.2004.04154.x.
    • (2004) Mol Microbiol , vol.53 , pp. 497-515
    • Yildiz, F.H.1    Liu, X.S.2    Heydorn, A.3    Schoolnik, G.K.4
  • 28
    • 33846255390 scopus 로고    scopus 로고
    • Regulation of rugosity and biofilm formation in Vibrio cholerae: comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR
    • Beyhan S, Bilecen K, Salama SR, Casper-Lindley C, Yildiz FH. 2007. Regulation of rugosity and biofilm formation in Vibrio cholerae: comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR. J Bacteriol 189:388-402. http://dx.doi.org/10.1128/JB.00981-06.
    • (2007) J Bacteriol , vol.189 , pp. 388-402
    • Beyhan, S.1    Bilecen, K.2    Salama, S.R.3    Casper-Lindley, C.4    Yildiz, F.H.5
  • 29
    • 34248402387 scopus 로고    scopus 로고
    • The quorum sensing regulator HapR downregulates the expression of the virulence gene transcription factor AphA in Vibrio cholerae by antagonizing Lrp-and VpsR-mediated activation
    • Lin W, Kovacikova G, Skorupski K. 2007. The quorum sensing regulator HapR downregulates the expression of the virulence gene transcription factor AphA in Vibrio cholerae by antagonizing Lrp-and VpsR-mediated activation. Mol Microbiol 64:953-967. http://dx.doi.org/10.1111/j.1365-2958.2007.05693.x.
    • (2007) Mol Microbiol , vol.64 , pp. 953-967
    • Lin, W.1    Kovacikova, G.2    Skorupski, K.3
  • 30
    • 84893752687 scopus 로고    scopus 로고
    • The LuxR-type regulator VpsT negatively controls the transcription of rpoS, encoding the general stress response regulator, in Vibrio cholerae biofilms
    • Wang H, Ayala JC, Benitez JA, Silva AJ. 2014. The LuxR-type regulator VpsT negatively controls the transcription of rpoS, encoding the general stress response regulator, in Vibrio cholerae biofilms. J Bacteriol 196:1020-1030. http://dx.doi.org/10.1128/JB.00993-13.
    • (2014) J Bacteriol , vol.196 , pp. 1020-1030
    • Wang, H.1    Ayala, J.C.2    Benitez, J.A.3    Silva, A.J.4
  • 31
    • 41549091882 scopus 로고    scopus 로고
    • Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT
    • Waters CM, Lu W, Rabinowitz JD, Bassler BL. 2008. Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT. J Bacteriol 190:2527-2536. http://dx.doi.org/10.1128/JB.01756-07.
    • (2008) J Bacteriol , vol.190 , pp. 2527-2536
    • Waters, C.M.1    Lu, W.2    Rabinowitz, J.D.3    Bassler, B.L.4
  • 32
    • 84861173016 scopus 로고    scopus 로고
    • The histone-like nucleoid structuring protein (H-NS) is a repressor of Vibrio cholerae exopolysaccharide biosynthesis (vps) genes
    • Wang H, Ayala JC, Silva AJ, Benitez JA. 2012. The histone-like nucleoid structuring protein (H-NS) is a repressor of Vibrio cholerae exopolysaccharide biosynthesis (vps) genes. Appl Environ Microbiol 78:2482-2488. http://dx.doi.org/10.1128/AEM.07629-11.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 2482-2488
    • Wang, H.1    Ayala, J.C.2    Silva, A.J.3    Benitez, J.A.4
  • 33
    • 36649025757 scopus 로고    scopus 로고
    • The cyclic AMP receptor protein modulates colonial morphology in Vibrio cholerae
    • Liang W, Silva AJ, Benitez JA. 2007. The cyclic AMP receptor protein modulates colonial morphology in Vibrio cholerae. Appl Environ Microbiol 73:7482-7487. http://dx.doi.org/10.1128/AEM.01564-07.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7482-7487
    • Liang, W.1    Silva, A.J.2    Benitez, J.A.3
  • 34
    • 34948829648 scopus 로고    scopus 로고
    • The cyclic AMP receptor protein modulates quorum sensing, motility and multiple genes that affect intestinal colonization in Vibrio cholerae
    • Liang W, Pascual-Montano A, Silva AJ, Benitez JA. 2007. The cyclic AMP receptor protein modulates quorum sensing, motility and multiple genes that affect intestinal colonization in Vibrio cholerae. Microbiology 153:2964-2975. http://dx.doi.org/10.1099/mic.0.2007/006668-0.
    • (2007) Microbiology , vol.153 , pp. 2964-2975
    • Liang, W.1    Pascual-Montano, A.2    Silva, A.J.3    Benitez, J.A.4
  • 35
    • 53849110599 scopus 로고    scopus 로고
    • Interplay between cyclic AMP-cyclic AMP receptor protein and cyclic di-GMP signaling in Vibrio cholerae biofilm formation
    • Fong JCN, Yildiz FH. 2008. Interplay between cyclic AMP-cyclic AMP receptor protein and cyclic di-GMP signaling in Vibrio cholerae biofilm formation. J Bacteriol 190:6646-6659. http://dx.doi.org/10.1128/JB.00466-08.
    • (2008) J Bacteriol , vol.190 , pp. 6646-6659
    • Fong, J.C.N.1    Yildiz, F.H.2
  • 37
    • 33745875009 scopus 로고    scopus 로고
    • Molecular characterization of Pantoea stewartii subsp. stewartii HrpY, a conserved response regulator of the Hrp type III secretion system, and its interaction with the hrpS promoter
    • Merighi M, Majerczak DR, Zianni M, Tessanne K, Coplin DL. 2006. Molecular characterization of Pantoea stewartii subsp. stewartii HrpY, a conserved response regulator of the Hrp type III secretion system, and its interaction with the hrpS promoter. J Bacteriol 188:5089-5100. http://dx.doi.org/10.1128/JB.01929-05.
    • (2006) J Bacteriol , vol.188 , pp. 5089-5100
    • Merighi, M.1    Majerczak, D.R.2    Zianni, M.3    Tessanne, K.4    Coplin, D.L.5
  • 38
    • 33745875402 scopus 로고    scopus 로고
    • Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument
    • Zianni M, Tessanne K, Merighi M, Laguna R, Tabita FR. 2006. Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument. J Biomol Tech 17:103-113.
    • (2006) J Biomol Tech , vol.17 , pp. 103-113
    • Zianni, M.1    Tessanne, K.2    Merighi, M.3    Laguna, R.4    Tabita, F.R.5
  • 39
    • 84857978628 scopus 로고    scopus 로고
    • Further unraveling the regulatory twist by elucidating metabolic coinducer-mediated CbbR-cbbI promoter interactions in Rhodopseudomonas palustris CGA010
    • Joshi GS, Zianni M, Bobst CE, Tabita FR. 2012. Further unraveling the regulatory twist by elucidating metabolic coinducer-mediated CbbR-cbbI promoter interactions in Rhodopseudomonas palustris CGA010. J Bacteriol 194:1350-1360. http://dx.doi.org/10.1128/JB.06418-11.
    • (2012) J Bacteriol , vol.194 , pp. 1350-1360
    • Joshi, G.S.1    Zianni, M.2    Bobst, C.E.3    Tabita, F.R.4
  • 40
    • 0023892552 scopus 로고
    • A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR
    • Miller VL, Mekalanos JJ. 1988. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J Bacteriol 170:2575-2583.
    • (1988) J Bacteriol , vol.170 , pp. 2575-2583
    • Miller, V.L.1    Mekalanos, J.J.2
  • 41
    • 0033015043 scopus 로고    scopus 로고
    • Genetic characterization of a new type IV-A pilus gene cluster found in both classical and El Tor biotypes of Vibrio cholerae
    • Fullner KJ, Mekalanos JJ. 1999. Genetic characterization of a new type IV-A pilus gene cluster found in both classical and El Tor biotypes of Vibrio cholerae. Infect Immun 67:1393-1404.
    • (1999) Infect Immun , vol.67 , pp. 1393-1404
    • Fullner, K.J.1    Mekalanos, J.J.2
  • 42
    • 67649399077 scopus 로고    scopus 로고
    • Identification and characterization of OscR, a transcriptional regulator involved in osmolarity adaptation in Vibrio cholerae
    • Shikuma NJ, Yildiz FH. 2009. Identification and characterization of OscR, a transcriptional regulator involved in osmolarity adaptation in Vibrio cholerae. J Bacteriol 191:4082-4096. http://dx.doi.org/10.1128/JB.01540-08.
    • (2009) J Bacteriol , vol.191 , pp. 4082-4096
    • Shikuma, N.J.1    Yildiz, F.H.2
  • 43
    • 77956885050 scopus 로고    scopus 로고
    • Genetic manipulation of Vibrio cholerae by combining natural transformation with FLP recombination
    • De Souza Silva O, Blokesch M. 2010. Genetic manipulation of Vibrio cholerae by combining natural transformation with FLP recombination. Plasmid 64:186-195. http://dx.doi.org/10.1016/j.plasmid.2010.08.001.
    • (2010) Plasmid , vol.64 , pp. 186-195
    • De Souza Silva, O.1    Blokesch, M.2
  • 44
    • 29144506940 scopus 로고    scopus 로고
    • Chitin induces natural competence in Vibrio cholerae
    • Meibom KL, Blokesch M, Dolganov NA, Wu C-Y, Schoolnik GK. 2005. Chitin induces natural competence in Vibrio cholerae. Science 310:1824-1827. http://dx.doi.org/10.1126/science.1120096.
    • (2005) Science , vol.310 , pp. 1824-1827
    • Meibom, K.L.1    Blokesch, M.2    Dolganov, N.A.3    Wu, C.-Y.4    Schoolnik, G.K.5
  • 46
    • 2942558697 scopus 로고    scopus 로고
    • On the power of profiles for transcription factor binding site detection
    • Rahmann S, Müller T, Vingron M. 2003. On the power of profiles for transcription factor binding site detection. Stat Appl Genet Mol Biol 2:Article 7. http://dx.doi.org/10.2202/1544-6115.1032.
    • (2003) Stat Appl Genet Mol Biol , vol.2
    • Rahmann, S.1    Müller, T.2    Vingron, M.3
  • 47
    • 33750959240 scopus 로고    scopus 로고
    • Fast index based algorithms and software for matching position specific scoring matrices
    • Beckstette M, Homann R, Giegerich R, Kurtz S. 2006. Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7:389. http://dx.doi.org/10.1186/1471-2105-7-389.
    • (2006) BMC Bioinformatics , vol.7 , pp. 389
    • Beckstette, M.1    Homann, R.2    Giegerich, R.3    Kurtz, S.4
  • 49
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680. http://dx.doi.org/10.1093/nar/22.22.4673.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 50
    • 65549147368 scopus 로고    scopus 로고
    • A reexamination of information theory-based methods for DNA-binding site identification
    • Erill I, O'Neill MC. 2009. A reexamination of information theory-based methods for DNA-binding site identification. BMC Bioinformatics 10:57. http://dx.doi.org/10.1186/1471-2105-10-57.
    • (2009) BMC Bioinformatics , vol.10 , pp. 57
    • Erill, I.1    O'Neill, M.C.2
  • 51
    • 75549089583 scopus 로고    scopus 로고
    • phiSITE: database of gene regulation in bacteriophages
    • Klucar L, Stano M, Hajduk M. 2010. phiSITE: database of gene regulation in bacteriophages. Nucleic Acids Res 38:D366-D370. http://dx.doi.org/10.1093/nar/gkp911.
    • (2010) Nucleic Acids Res , vol.38 , pp. D366-D370
    • Klucar, L.1    Stano, M.2    Hajduk, M.3
  • 52
    • 4344689731 scopus 로고    scopus 로고
    • Geometric and dynamic requirements for DNA looping, wrapping and unwrapping in the activation of E. coli glnAp2 transcription by NtrC
    • Lilja AE, Jenssen JR, Kahn JD. 2004. Geometric and dynamic requirements for DNA looping, wrapping and unwrapping in the activation of E. coli glnAp2 transcription by NtrC. J Mol Biol 342:467-478. http://dx.doi.org/10.1016/j.jmb.2004.07.057.
    • (2004) J Mol Biol , vol.342 , pp. 467-478
    • Lilja, A.E.1    Jenssen, J.R.2    Kahn, J.D.3
  • 53
    • 33744780177 scopus 로고    scopus 로고
    • The structural basis for regulated assembly and function of the transcriptional activator NtrC
    • De Carlo S, Chen B, Hoover TR, Kondrashkina E, Nogales E, Nixon BT. 2006. The structural basis for regulated assembly and function of the transcriptional activator NtrC. Genes Dev 20:1485-1495. http://dx.doi.org/10.1101/gad.1418306.
    • (2006) Genes Dev , vol.20 , pp. 1485-1495
    • De Carlo, S.1    Chen, B.2    Hoover, T.R.3    Kondrashkina, E.4    Nogales, E.5    Nixon, B.T.6
  • 54
    • 0033941006 scopus 로고    scopus 로고
    • Vibrio cholerae H-NS silences virulence gene expression at multiple steps in the ToxR regulatory cascade
    • Nye MB, Pfau JD, Skorupski K, Taylor RK. 2000. Vibrio cholerae H-NS silences virulence gene expression at multiple steps in the ToxR regulatory cascade. J Bacteriol 182:4295-4303. http://dx.doi.org/10.1128/JB.182.15.4295-4303.2000.
    • (2000) J Bacteriol , vol.182 , pp. 4295-4303
    • Nye, M.B.1    Pfau, J.D.2    Skorupski, K.3    Taylor, R.K.4
  • 55
    • 0036195527 scopus 로고    scopus 로고
    • Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation
    • Yu RR, DiRita VJ. 2002. Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation. Mol Microbiol 43:119-134. http://dx.doi.org/10.1046/j.1365-2958.2002.02721.x.
    • (2002) Mol Microbiol , vol.43 , pp. 119-134
    • Yu, R.R.1    DiRita, V.J.2
  • 56
    • 76749127600 scopus 로고    scopus 로고
    • The virulence transcriptional activator AphA enhances biofilm formation by Vibrio cholerae by activating expression of the biofilm regulator VpsT
    • Yang M, Frey EM, Liu Z, Bishar R, Zhu J. 2010. The virulence transcriptional activator AphA enhances biofilm formation by Vibrio cholerae by activating expression of the biofilm regulator VpsT. Infect Immun 78:697-703. http://dx.doi.org/10.1128/IAI.00429-09.
    • (2010) Infect Immun , vol.78 , pp. 697-703
    • Yang, M.1    Frey, E.M.2    Liu, Z.3    Bishar, R.4    Zhu, J.5
  • 57
    • 33645296297 scopus 로고    scopus 로고
    • Cyclic-diGMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation
    • Lim B, Beyhan S, Meir J, Yildiz FH. 2006. Cyclic-diGMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation. Mol Microbiol 60:331-348. http://dx.doi.org/10.1111/j.1365-2958.2006.05106.x.
    • (2006) Mol Microbiol , vol.60 , pp. 331-348
    • Lim, B.1    Beyhan, S.2    Meir, J.3    Yildiz, F.H.4
  • 58
    • 0025047590 scopus 로고
    • Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
    • Herrero M, de Lorenzo V, Timmis KN. 1990. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172:6557-6567.
    • (1990) J Bacteriol , vol.172 , pp. 6557-6567
    • Herrero, M.1    de Lorenzo, V.2    Timmis, K.N.3
  • 59
    • 0028358260 scopus 로고
    • Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5-and Tn10-derived minitransposons
    • De Lorenzo V, Timmis KN. 1994. Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5-and Tn10-derived minitransposons. Methods Enzymol 235:386-405. http://dx.doi.org/10.1016/0076-6879(94)35157-0.
    • (1994) Methods Enzymol , vol.235 , pp. 386-405
    • De Lorenzo, V.1    Timmis, K.N.2
  • 60
    • 3142564584 scopus 로고    scopus 로고
    • The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
    • Lenz DH, Mok KC, Lilley BN, Kulkarni RV, Wingreen NS, Bassler BL. 2004. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118:69-82. http://dx.doi.org/10.1016/j.cell.2004.06.009.
    • (2004) Cell , vol.118 , pp. 69-82
    • Lenz, D.H.1    Mok, K.C.2    Lilley, B.N.3    Kulkarni, R.V.4    Wingreen, N.S.5    Bassler, B.L.6
  • 61
    • 84868288795 scopus 로고    scopus 로고
    • TransFLP-a method to genetically modify Vibrio cholerae based on natural transformation and FLP-recombination
    • Blokesch M. 2012. TransFLP-a method to genetically modify Vibrio cholerae based on natural transformation and FLP-recombination. J Vis Exp 2012:3761. http://dx.doi.org/10.3791/3761.
    • (2012) J Vis Exp , vol.2012 , pp. 3761
    • Blokesch, M.1


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