Temporal and spatial monitoring and prediction of epidemic outbreaks

IEEE Journal of Biomedical and Health Informatics

Volumn 19, Issue 2, 2015, Pages 735-744

  Zamiri, Amin ^a   Yazdi, Hadi Sadoghi ^a   Goli, Sepideh Afkhami ^b  

^a FERDOWSI UNIVERSITY OF MASHHAD   (Iran)

^b UNIVERSITY OF CALGARY   (Canada)

Author keywords

Filtering; nonlinear dynamic systems; spatiotemporal phenomena; syndromic surveillance

Indexed keywords

DYNAMICS; FILTRATION; FORECASTING; NONLINEAR DYNAMICAL SYSTEMS; PREDICTIVE ANALYTICS;

BAYESIAN FRAMEWORKS; BIOLOGICAL FEATURES; INFECTIOUS DISEASE; PROBABILITY HYPOTHESIS DENSITY FILTER; RANDOM FINITE SETS; SPATIOTEMPORAL PHENOMENA; SYNDROMIC SURVEILLANCE; TEMPORAL AND SPATIAL;

EPIDEMIOLOGY;

BAYES THEOREM; BIOLOGICAL MODEL; EPIDEMIC; EPIDEMIOLOGY; HUMAN; SPATIOTEMPORAL ANALYSIS; STATISTICS AND NUMERICAL DATA; SWITZERLAND;

BAYES THEOREM; DISEASE OUTBREAKS; EPIDEMICS; HUMANS; MODELS, BIOLOGICAL; SPATIO-TEMPORAL ANALYSIS; SWITZERLAND;

EID: 84924674528     PISSN: 21682194     EISSN: 21682208     Source Type: Journal    
DOI: 10.1109/JBHI.2014.2338213     Document Type: Article

References (46)

1. Y. Le Strat and F. Carrat, "Monitoring epidemiologic surveillance data using hiddenMarkov models, " Stat. Med., vol. 18, no. 24, pp. 3463-3478, 1999.
2. X. Jiang, G. Wallstrom, G. F. Cooper, and M. M. Wagner, "Bayesian prediction of an epidemic curve, " J. Biomed. Inform., vol. 42, no. 1, pp. 90-99, Feb. 2009.
3. H. Liang and Y. Xue, "Investigating public health emergency response information system initiatives in China, " Int. J. Med. Inform., vol. 1, no. 2, p. 9-10, 2004.
4. R. M. Anderson, C. Fraser, A. C. Ghani, C. a Donnelly, S. Riley, N. M. Ferguson, G. M. Leung, T. H. Lam, and A. J. Hedley, "Epidemiology, transmission dynamics and control of SARS: The 2002-2003 epidemic, " Philos. Trans. Roy. Soc. Lond. B., Biol. Sci., vol. 359, no. 1447, pp. 1091-1095, Jul. 2004.
5. C. Robertson, T. A. Nelson, Y. C. Macnab, and A. B. Lawson, "Review of methods for space-time disease surveillance, " Spat. Spatiotemporal Epidemiol., vol. 1, no. 2-3, pp. 105-116, Jul. 2010.
6. J.Manitz, "Automated detection of infectious disease outbreaks, "Diploma thesis, Ludwig-Maximilians-Universität München, München, Germany, 2010.
7. X. Zhou, Q. Li, Z. Zhu, H. Zhao, H. Tang, and Y. Feng, "Monitoring epidemic alert levels by analyzing internet search volume, " IEEE Trans. Biomed. Eng., vol. 60, no. 2, pp. 446-452, Feb. 2013.
8. B. J. Paterson and D. N. Durrheim, "The remarkable adaptability of syndromic surveillance to meet public health needs, " J. Epidemiol. Global Health, vol. 3, no. 1, pp. 41-47, 2013.
9. W. H. Woodall, J. B. Marshall, M. D. Joner, and E. Shannon, "On the use and evaluation of prospective scan methods for health-related surveillance, " J. Roy. Statist. Soc., Ser. A, vol. 171, pp. 223-237, 2008.
10. C. Sonesson and D. Bock, "A review and discussion of prospective statistical surveillance in public health, " J. Roy. Statist. Soc., Ser. A, vol. 166, no. 1, pp. 5-21, 2003.
11. S. Straif-Bourgeois and R. Ratard, "Handbook of Epidemiology, " in Handbook of Epidemiology. New York, NY, USA: Springer-Verlag, 2005, pp. 1328-1362.
12. M. Wagner, A. Moore, and R. Aryel, Handbook of Biosurveillance. New York, NY, USA: Academic, 2006.
13. D. D. L. Buckeridge, H. Burkom, M. Campbell, W. R. Hogan, and A. W. Moore, "Algorithms for rapid outbreak detection: A research synthesis, " J. Biomed. Inform., vol. 38, no. 2, pp. 99-113, 2005.
14. A. Corberán-Vallet, "Prospective surveillance of multivariate spatial disease data, " Stat. Methods Med. Res., vol. 21, pp. 457-477, Apr. 2012.
15. T. Smieszek, M. Balmer, J. Hattendorf, K. W. Axhausen, J. Zinsstag, and R. W. Scholz, "Reconstructing the 2003/2004 H3N2 influenza epidemic in Switzerland with a spatially explicit, individual-based model, " BMC Infect. Dis., vol. 11, no. 1, pp. 115-133, Jan. 2011.
16. A. Skvortsov and B. Ristic, "Monitoring and prediction of an epidemic outbreak using syndromic observations, " Math. Biosci., vol. 240, no. 1, pp. 12-19, Nov. 2012.
17. C. Jègat, F. Carrat, C. Lajaunie, and H. Wackernagel, "Early detection and assessment of epidemics by particle filtering, " in geoENV VI-Geostatistics for Environmental Applications, vol. 15, A. Soares, M. Pereira, and R. Dimitrakopoulos, Eds. Dordrecht, Netherlands: Springer, 2008, pp. 23-35.
18. B. Ristic, "Predicting the progress and the peak of an epidemic, " in Proc. IEEE Int. Conf. Acoustics, Speech Signal Process., 2009, pp. 513-516.
19. I. Sazonov, M. Kelbert, and M. B. Gravenor, "The speed of epidemic waves in a one-dimensional lattice of SIR models, " Math. Model. Nat. Phenom., vol. 3, no. 4, pp. 28-47, Dec. 2008.
20. D. J. Daley and J. Gani, Epidemic Modelling: An Introduction. Cambridge, U.K.: Cambridge Univ. Press, 2001.
21. J. D. Murray, Mathematical Biology, 3rd ed. London, U.K.: Springer-Verlag, 1989.
22. M. J. Keeling and L. Danon, "Mathematical modelling of infectious diseases, " Brit. Med. Bull., vol. 92, pp. 33-42, Jan. 2009.
23. L. Rass and J. Radcliffe, "Spatial deterministic epidemics, " Bull. Amer. Math. Soc., vol. 42, no. 4, pp. 521-527, 2005.
24. N. Ferguson, C. Donnelly, and R. Anderson, "Transmission intensity and impact of control policies on the foot andmouth epidemic inGreat Britain, " Nature, vol. 413, pp. 542-548, 2001.
25. D. Mollison, Epidemic Models: Their Structure and Relation to Data. Cambridge, U.K.: Cambridge Univ. Press, 1995.
26. J. Paget and R. Marquet, "Influenza activity in Europe during eight seasons (1999-2007): An evaluation of the indicators used to measure activity and an assessment of the timing, length and course of peak activity (spread) across Europe, " BMC Infect. Dis., vol. 30, no. 7, pp. 141-148, 2007.
27. D. L. Smith, B. Lucey, L. A. Waller, J. E. Childs, and L. A. Real, "Predicting the spatial dynamics of rabies epidemics on heterogeneous landscapes, " Proc. Nat. Acad. Sci. USA, vol. 99, no. 6, pp. 3668-72, Mar. 2002.
28. S. S. Lee and N. S. Wong, "Reconstruction of epidemic curves for pandemic influenza A (H1N1) 2009 at city and sub-city levels, " Virol. J., vol. 7, no. 1, pp. 321-327, Jan. 2010.
29. I. M. Hall, R. Gani, H. E. Hughes, and S. Leach, "Real-time epidemic forecasting for pandemic influenza, " Epidemiol. Infect., vol. 135, no. 3, pp. 372-385, Apr. 2007.
30. A Flahault, S Letrait, P. Blin, S. Hazout, J. Ménarés, and A. J. Valleron, "Modelling the 1985 influenza epidemic in France, " Stat. Med., vol. 7, pp. 1147-1155, 1988.
31. R. Anderson and R.May, "Population biology of infectious diseases: Part I, " Nature, vol. 280, pp. 361-367, 1979.
32. B. Deal, C. Farello, M. Lancaster, T. Kompare, and B. Hannon, "A dynamic model of the spatial spread of an infectious disease: the case of fox rabies in Illinois, " Environ. Model. Assessment, vol. 5, pp. 47-62, 2000.
33. W. Plowright, "Research on wildlife diseases: Is a reappraisal necessary?" Revue Scientifique et Technique de l'OIE, vol. 7, no. 4, pp. 783-795, 1988.
34. R. Mahler, "The random set approach to data fusion, " Proc. SPIE, vol. 2234, pp. 287-295, 1994.
35. R. Mahler, "Multitarget Bayes filtering via first-order multitarget moments, " IEEE Trans. Aerosp. Electron. Syst., vol. 39, no. 4, pp. 1152-1178, Oct. 2003.
36. I. Goodman, R. Mahler, and H. Nguyen, Mathematics of Data Fusion. New York, NY, USA: Springer, 1997.
37. R. Mahler, "Global integrated data fusion, " presented at the 7th Nat. Symp. Sens. Fusion, Albuquerque, NM, USA, 1994.
38. B.Vo, S. Singh, andA.Doucet, "Sequential Monte Carlo methods for multitarget filtering with random finite sets, " IEEE Trans. Aerosp. Electron. Syst., vol. 41, no. 4, pp. 1224-1245, Oct. 2005.
39. B.-N. Vo and W.-K. Ma, "The Gaussian mixture probability hypothesis density filter, " IEEE Trans. Signal Process., vol. 54, no. 11, pp. 4091-4104, Nov. 2006.
40. D. Clark, "Multiple target tracking with the probability hypothesis density filter, " Ph. D. thesis, Heriot-Watt University, Riccarton, U.K., 2006.
41. R. P. Mahler, "A theoretical foundation for the Stein-Winter probability hypothesis density (PHD) multi-target tracking approach, " presented at the MSS Nat. Symp. Sensor Data Fusion, San Antonio, TX, USA, 2000.
42. A. S. Stordal, "Sequential Monte Carlo methods for Bayesian filtering, " Ph.D. thesis, University of Bergen, Bergen, Norway, 2008.
43. H. Sidenbladh, "Multi-target particle filtering for the probability hypothesis density, " in Proc. 6th Int. Conf. Inform. Fusion, 2003, pp. 800-806.
44. T. Zajic and R. Mahler, "Particle-systems implementation of the PHD multitarget-tracking filter, " Proc. SPIE, vol. 5096, pp. 291-299, 2003.
45. R. Vullings, B. de Vries, and J. W. M. Bergmans, "An adaptive Kalman filter for ECG signal enhancement, " IEEE Trans. Biomed. Eng., vol. 58, no. 4, pp. 1094-1103, Apr. 2011.
46. H. Hethcote, "The mathematics of infectious diseases, " SIAM Rev., vol. 42, no. 4, pp. 599-653, 2000