Integrated HPV genomes tend to integrate in gene desert areas in the CaSki, HeLa, and SiHa cervical cancer cell lines

Life Sciences

Volumn 127, Issue , 2015, Pages 46-52

  Diao, Ming Kun ^a,b   Liu, Chu Yi ^b   Liu, Hong Wei ^a,b   Li, Jin Tao ^a,b   Li, Fan ^b   Mehryar, Mohammadreza Mohammadzad ^b   Wang, Yang Junqi ^b   Zhan, Shao Bing ^a   Zhou, Yu Bai ^b   Zhong, Ru Gang ^b   Zeng, Yi ^a,b  

^a CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b BEIJING UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Cervical cancer; Gene desert areas; Human papillomavirus; Integration

Indexed keywords

MESSENGER RNA; VIRUS RNA;

ARTICLE; CASKI CELL LINE; CERVICAL CANCER CELL LINE; CHROMOSOME 13Q; CHROMOSOME 8Q; CHROMOSOME BREAKAGE; CONTROLLED STUDY; GENE AMPLIFICATION; GENETIC TRANSCRIPTION; HELA CELL LINE; HUMAN; HUMAN CELL; MOLECULAR CLONING; NONHUMAN; ONCOGENE; SIHA CELL LINE; VIRUS DNA CELL DNA INTERACTION; VIRUS GENOME; WART VIRUS; FEMALE; GENE DOSAGE; GENE EXPRESSION REGULATION; GENETICS; HUMAN PAPILLOMAVIRUS TYPE 16; HUMAN PAPILLOMAVIRUS TYPE 18; TRANSCRIPTION INITIATION SITE; TUMOR CELL LINE; UTERINE CERVIX TUMOR;

HUMAN PAPILLOMAVIRUS; PAPILLOMAVIRIDAE;

CELL LINE, TUMOR; FEMALE; GENE DOSAGE; GENE EXPRESSION REGULATION, VIRAL; GENOME, VIRAL; HELA CELLS; HUMAN PAPILLOMAVIRUS 16; HUMAN PAPILLOMAVIRUS 18; HUMANS; RNA, VIRAL; TRANSCRIPTION INITIATION SITE; UTERINE CERVICAL NEOPLASMS; VIRUS INTEGRATION;

EID: 84924663017     PISSN: 00243205     EISSN: 18790631     Source Type: Journal    
DOI: 10.1016/j.lfs.2015.01.039     Document Type: Article

References (39)

1. K. Adler, T. Erickson, and M. Bobrow High sensitivity detection of HPV-16 in SiHa and CaSki cells utilizing FISH enhanced by TSA Histochem. Cell Biol. 108 1997 321 324
2. J. Barsoum, S.S. Prakash, P. Han, and E.J. Androphy Mechanism of action of the papillomavirus E2 repressor: repression in the absence of DNA binding J. Virol. 66 1992 3941 3945
3. R. Baumgarten Hepatitis B virus infection and hepatocellular cancer Z. Arztl. Fortbild. 81 1987 63 64
4. F.X. Bosch, and S. de Sanjose The epidemiology of human papillomavirus infection and cervical cancer Dis. Markers 23 2007 213 227
5. F.X. Bosch, A. Lorincz, N. Munoz, C.J. Meijer, and K.V. Shah The causal relation between human papillomavirus and cervical cancer J. Clin. Pathol. 55 2002 244 265
6. R.D. Burk, Z. Chen, and K. Van Doorslaer Human papillomaviruses: genetic basis of carcinogenicity Public Health Genomics 12 2009 281 290
7. C.I. Bustamante, and J.C. Wade Herpes simplex virus infection in the immunocompromised cancer patient J. Clin. Oncol. Off. J. Am. Soc. Clin. Oncol. 9 1991 1903 1915
8. V. Cogliano, R. Baan, K. Straif, Y. Grosse, B. Secretan, and F. El Ghissassi Carcinogenicity of human papillomaviruses Lancet Oncol. 6 2005 204
9. K. Cooper, and J.O. McGee Human papillomavirus, integration and cervical carcinogenesis: a clinicopathological perspective Mol. Pathol. 50 1997 1 3
10. S.A. Corden, L.J. Sant-Cassia, A.J. Easton, and A.G. Morris The integration of HPV-18 DNA in cervical carcinoma Mol. Pathol. 52 1999 275 282
11. P. Das, A. Thomas, U. Mahantshetty, S.K. Shrivastava, K. Deodhar, and R. Mulherkar HPV genotyping and site of viral integration in cervical cancers in Indian women PLoS One 7 2012 e41012
12. M.A. de Boer, E.S. Jordanova, G.G. Kenter, A.A. Peters, W.E. Corver, J.B. Trimbos, and G.J. Fleuren High human papillomavirus oncogene mRNA expression and not viral DNA load is associated with poor prognosis in cervical cancer patients Clin. Cancer Res. 13 2007 132 138
13. D. Derse, B. Crise, Y. Li, G. Princler, N. Lum, C. Stewart, C.F. McGrath, S.H. Hughes, D.J. Munroe, and X. Wu Human T-cell leukemia virus type 1 integration target sites in the human genome: comparison with those of other retroviruses J. Virol. 81 2007 6731 6741
14. G. Fallot, C. Neuveut, and M.A. Buendia Diverse roles of hepatitis B virus in liver cancer Curr. Opin. Virol. 2 2012 467 473
15. C. Flake, J. Arafa, A. Hall, E. Ence, K. Howard, and K. Kingsley Screening and detection of human papillomavirus (HPV) high-risk strains HPV16 and HPV18 in saliva samples from subjects under 18 years old in Nevada: a pilot study BMC Oral Health 12 2012 43
16. C. Gilles, J. Piette, D. Ploton, M. Doco-Fenzy, and J.M. Foidart Viral integration sites in human papilloma virus-33-immortalized cervical keratinocyte cell lines Cancer Genet. Cytogenet. 90 1996 63 69
17. E. Guzman-Olea, V.H. Bermudez-Morales, O. Peralta-Zaragoza, K. Torres-Poveda, and V. Madrid-Marina Molecular mechanism and potential targets for blocking HPV-induced lesion development J. Oncol. 2012 2012 278312
18. H.B. Heiles, E. Genersch, C. Kessler, R. Neumann, and H.J. Eggers In situ hybridization with digoxigenin-labeled DNA of human papillomaviruses (HPV 16/18) in HeLa and SiHa cells Biotechniques 6 1988 978 981
19. P. Hillemanns, and X. Wang Integration of HPV-16 and HPV-18 DNA in vulvar intraepithelial neoplasia Gynecol. Oncol. 100 2006 276 282
20. M. Levrero Viral hepatitis and liver cancer: the case of hepatitis C Oncogene 25 2006 3834 3847
21. A. MacNeil, J.L. Sankale, S.T. Meloni, A.D. Sarr, S. Mboup, and P. Kanki Genomic sites of human immunodeficiency virus type 2 (HIV-2) integration: similarities to HIV-1 in vitro and possible differences in vivo J. Virol. 80 2006 7316 7321
22. D. Mazumder Indra, R.K. Singh, S. Mitra, S. Dutta, C. Chakraborty, P.S. Basu, R.K. Mondal, S. Roychoudhury, and C.K. Panda Genetic and epigenetic changes of HPV16 in cervical cancer differentially regulate E6/E7 expression and associate with disease progression Gynecol. Oncol. 123 2011 597 604
23. L. Nambaru, B. Meenakumari, R. Swaminathan, and T. Rajkumar Prognostic significance of HPV physical status and integration sites in cervical cancer Asian Pac. J. Cancer Prev. 10 2009 355 360
24. A. Narezkina, K.D. Taganov, S. Litwin, R. Stoyanova, J. Hayashi, C. Seeger, A.M. Skalka, and R.A. Katz Genome-wide analyses of avian sarcoma virus integration sites J. Virol. 78 2004 11656 11663
25. R.N. Picken, and H.L. Yang The integration of HPV-18 into HeLa cells has involved duplication of part of the viral genome as well as human DNA flanking sequences Nucleic Acids Res. 15 1987 10068
26. Z.L. Qu, N.Q. Cui, Z.H. Xi, and Z. Du Investigation of hepatitis B virus integration sites in hilar cholangiocarcinoma tissues Zhonghua Wai Ke Za Zhi 49 2011 741 745
27. C.C. Ragin, S.C. Reshmi, and S.M. Gollin Mapping and analysis of HPV16 integration sites in a head and neck cancer cell line Int. J. Cancer 110 2004 701 709
28. E. Rozenblum, P. Vahteristo, T. Sandberg, J.T. Bergthorsson, K. Syrjakoski, D. Weaver, K. Haraldsson, H.K. Johannsdottir, P. Vehmanen, S. Nigam, N. Golberger, C. Robbins, E. Pak, A. Dutra, E. Gillander, D.A. Stephan, J. Bailey-Wilson, S.H. Juo, T. Kainu, A. Arason, R.B. Barkardottir, H. Nevanlinna, A. Borg, and O.P. Kallioniemi A genomic map of a 6-Mb region at 13q21-q22 implicated in cancer development: identification and characterization of candidate genes Hum. Genet. 110 2002 111 121
29. M. Schiffman, P.E. Castle, J. Jeronimo, A.C. Rodriguez, and S. Wacholder Human papillomavirus and cervical cancer Lancet 370 2007 890 907
30. J.T. Schiller, P.M. Day, and R.C. Kines Current understanding of the mechanism of HPV infection Gynecol. Oncol. 118 2010 S12 S17
31. M. Schmitz, C. Driesch, L. Jansen, I.B. Runnebaum, and M. Durst Non-random integration of the HPV genome in cervical cancer PLoS One 7 2012 e39632
32. B. Sola, D. Simon, M.G. Mattei, S. Fichelson, D. Bordereaux, P.E. Tambourin, J.L. Guenet, and S. Gisselbrecht Fim-1, Fim-2/c-fms, and Fim-3, three common integration sites of Friend murine leukemia virus in myeloblastic leukemias, map to mouse chromosomes 13, 18, and 3, respectively J. Virol. 62 1988 3973 3978
33. K. Tomasiewicz, R. Modrzewska, A. Lyczak, and G. Krawczuk TT virus infection and pancreatic cancer: relationship or accidental coexistence World J. Gastroenterol. 11 2005 2847 2849
34. A. Vilkin, and Y. Niv Association between hMLH1 hypermethylation and JC virus (JCV) infection in human colorectal cancer (CRC) Clin. Epigenetics 2 2011 1 5
35. N.F. Wasserman, I. Aneas, and M.A. Nobrega An 8q24 gene desert variant associated with prostate cancer risk confers differential in vivo activity to a MYC enhancer Genome Res. 20 2010 1191 1197
36. N. Wentzensen, R. Ridder, R. Klaes, S. Vinokurova, U. Schaefer, and M.K. Doeberitz Characterization of viral-cellular fusion transcripts in a large series of HPV16 and 18 positive anogenital lesions Oncogene 21 2002 419 426
37. N. Wentzensen, S. Vinokurova, and M. von Knebel Doeberitz Systematic review of genomic integration sites of human papillomavirus genomes in epithelial dysplasia and invasive cancer of the female lower genital tract Cancer Res. 64 2004 3878 3884
38. K. Yilmaz, B. Koptur, D.S. Dede, S. Aksoy, and K. Altundag Nasopharyngeal carcinoma with synchronous breast cancer; possible role of Epstein-Barr virus infection in the carcinogenesis of both cancers J. BUON 17 2012 600
39. C. Ziegert, N. Wentzensen, S. Vinokurova, F. Kisseljov, J. Einenkel, M. Hoeckel, and M. von Knebel Doeberitz A comprehensive analysis of HPV integration loci in anogenital lesions combining transcript and genome-based amplification techniques Oncogene 22 2003 3977 3984