Rapid identification of Mycobacterium avium clinical isolates by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Journal of Microbiology, Immunology and Infection

Volumn 48, Issue 2, 2015, Pages 205-212

  Lin, Chuan Sheng ^a   Su, Chih Cheng ^a   Hsieh, Shang Chen ^a   Lu, Chia Chen ^b   Wu, Tsu Lan ^a,c   Jia, Ju Hsin ^a,c   Wu, Ting Shu ^c   Han, Chau Chung ^d   Tsai, Wen Cherng ^e   Lu, Jang Jih ^a,c   Lai, Hsin Chih ^a  

^a CHANG GUNG UNIVERSITY COLLEGE OF MEDICINE   (Taiwan)

^b FU JEN CATHOLIC UNIVERSITY   (Taiwan)

^c CHANG GUNG MEMORIAL HOSPITAL   (Taiwan)

^d INSTITUTE OF ATOMIC AND MOLECULAR SCIENCES   (Taiwan)

^e NATIONAL YANG MING UNIVERSITY   (Taiwan)

Author keywords

Matrix assisted laser desorption ionization time of flight mass spectrometry; Mycobacterium avium; Rapid identification

Indexed keywords

ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MYCOBACTERIUM AVIUM; NONHUMAN; SPECIES IDENTIFICATION; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; CHEMISTRY; EVALUATION STUDY; HUMAN; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; PROCEDURES; TIME; TUBERCULOSIS;

BACTERIOLOGICAL TECHNIQUES; HUMANS; MYCOBACTERIUM AVIUM; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TIME FACTORS; TUBERCULOSIS;

EID: 84924538744     PISSN: 16841182     EISSN: 19959133     Source Type: Journal    
DOI: 10.1016/j.jmii.2013.08.008     Document Type: Article

References (39)

1. Picardeau M., Vincent V. Typing of Mycobacterium avium isolates by PCR. J Clin Microbiol 1996, 34:389-392.
2. Torvinen E., Lehtola M.J., Martikainen P.J., Miettinen I.T. Survival of Mycobacterium avium in drinking water biofilms as affected by water flow velocity, availability of phosphorus, and temperature. Appl Environ Microbiol 2007, 73:6201-6207.
3. Marras T.K., Wallace R.J., Koth L.L., Stulbarg M.S., Cowl C.T., Daley C.L. Hypersensitivity pneumonitis reaction to Mycobacterium avium in household water. Chest 2005, 127:664-671.
4. Schaefer W.B. Serologic identification and classification of the atypical mycobacteria by their agglutination. Am Rev Respir Dis 1965, 92:85-93.
5. Tsang A.Y., Denner J.C., Brennan P.J., McClatchy J.K. Clinical and epidemiological importance of typing of Mycobacterium avium complex isolates. J Clin Microbiol 1992, 30:479-484.
6. Glickman S.E., Kilburn J.O., Butler W.R., Ramos L.S. Rapid identification of mycolic acid patterns of mycobacteria by high-performance liquid chromatography using pattern recognition software and a Mycobacterium library. J Clin Microbiol 1994, 32:740-745.
7. Feizabadi M.M., Robertson I.D., Cousins D.V., Dawson D.J., Hampson D.J. Use of multilocus enzyme electrophoresis to examine genetic relationships amongst isolates of Mycobacterium intracellulare and related species. Microbiology 1997, 143:1461-1469.
8. Wasem C.F., McCarthy C.M., Murray L.W. Multilocus enzyme electrophoresis analysis of the Mycobacterium avium complex and other mycobacteria. J Clin Microbiol 1991, 29:264-271.
9. Musial C.E., Tice L.S., Stockman L., Roberts G.D. Identification of mycobacteria from culture by using the Gen-Probe Rapid Diagnostic System for Mycobacterium avium complex and Mycobacterium tuberculosis complex. J Clin Microbiol 1988, 26:2120-2123.
10. Ringuet H., Akoua-Koffi C., Honore S., Varnerot A., Vincent V., Berche P., et al. hsp65 sequencing for identification of rapidly growing mycobacteria. J Clin Microbiol 1999, 37:852-857.
11. Telenti A., Marchesi F., Balz M., Bally F., Böttger E.C., Bodmer T. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. JClin Microbiol 1993, 31:175-178.
12. Turenne C.Y., Wallace R., Behr M.A. Mycobacterium avium in the postgenomic era. Clin Microbiol Rev 2007, 20:205-229.
13. Yi W.C., Hsiao S., Liu J.H., Soo P.C., Horng Y.T., Tsai W.C., et al. Use of fluorescein labelled antibody and fluorescence activated cell sorter for rapid identification of Mycobacterium species. Biochem Biophys Res Commun 1998, 250:403-408.
14. Seng P., Drancourt M., Gouriet F., La Scola B., Fournier P.E., Rolain J.M., et al. Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 2009, 49:543-551.
15. Carbonnelle E., Beretti J.L., Cottyn S., Quesne G., Berche P., Nassif X., et al. Rapid identification of staphylococci isolated in clinical microbiology laboratories by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 2007, 45:2156-2161.
16. Degand N., Carbonnelle E., Dauphin B., Beretti J.L., Le Bourgeois M., Sermet-Gaudelus I., et al. Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nonfermenting gram-negative bacilli isolated from cystic fibrosis patients. J Clin Microbiol 2008, 46:3361-3367.
17. Haag A.M., Taylor S.N., Johnston K.H., Cole R.B. Rapid identification and speciation of Haemophilus bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Mass Spectrom 1998, 33:750-756.
18. Winkler M.A., Uher J., Cepa S. Direct analysis and identification of Helicobacter and Campylobacter species by MALDI-TOF mass spectrometry. Anal Chem 1999, 71:3416-3419.
19. Ferroni A., Suarez S., Beretti J.L., Dauphin B., Bille E., Meyer J., et al. Real-time identification of bacteria and Candida species in positive blood culture broths by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 2010, 48:1542-1548.
20. Hettick J.M., Kashon M.L., Simpson J.P., Siegel P.D., Mazurek G.H., Weissman D.N. Proteomic profiling of intact mycobacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Anal Chem 2004, 76:5769-5776.
21. Hettick J.M., Kashon M.L., Slaven J.E., Ma Y., Simpson J.P., Siegel P.D., et al. Discrimination of intact mycobacteria at the strain level: a combined MALDI-TOF MS and biostatistical analysis. Proteomics 2006, 6:6416-6425.
22. Pignone M., Greth K.M., Cooper J., Emerson D., Tang J. Identification of mycobacteria by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry. J Clin Microbiol 2006, 44:1963-1970.
23. Rogall T., Wolters J., Flohr T., Böttger E.C. Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium. Int J Syst Bacteriol 1990, 40:323-330.
24. Fox A., Rogers J.C., Fox K.F., Schnitzer G., Morgan S.L., Brown A., et al. Chemotaxonomic differentiation of legionellae by detection and characterization of aminodideoxyhexoses and other unique sugars using gas chromatography-mass spectrometry. J Clin Microbiol 1990, 28:546-552.
25. Wu T.L., Chia J.H., Kuo A.J., Su L.H., Wu T.S., Lai H.C. Rapid identification of mycobacteria from smear-positive sputum samples by nested PCR-restriction fragment length polymorphism analysis. J Clin Microbiol 2008, 46:3591-3594.
26. Lynn E.C., Chung M.C., Tsai W.C., Han C.C. Identification of Enterobacteriaceae bacteria by direct matrix-assisted laser desorption/ionization mass spectrometric analysis of whole cells. Rapid Commun Mass Spectrom 1999, 13:2022-2027.
27. Good R.C., Snider D.E. Isolation of nontuberculous mycobacteria in the United States. J Infect Dis 1980, 1982(146):829-833.
28. Gupta K., Verma I., Khuller G., Mahajan R. KatG protein: a novel marker for differential diagnosis of Mycobacterium avium complex infection. Indian J Med Microbiol 2010, 28:221-226.
29. Inderlied C.B., Kemper C.A., Bermudez L.E. The Mycobacterium avium complex. Clin Microbiol Rev 1993, 6:266-310.
30. Katoch V.M. Infections due to non-tuberculous mycobacteria (NTM). Indian J Med Res 2004, 120:290-304.
31. Fenselau C., Demirev P.A. Characterization of intact microorganisms by MALDI mass spectrometry. Mass Spectrom Rev 2001, 20:157-171.
32. Marklein G., Josten M., Klanke U., Müller E., Horré R., Maier T., et al. Matrix-assisted laser desorption ionization-time of flight mass spectrometry for fast and reliable identification of clinical yeast isolates. J Clin Microbiol 2009, 47:2912-2917.
33. Bizzini A., Durussel C., Bille J., Greub G., Prod'hom G. Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory. J Clin Microbiol 2010, 48:1549-1554.
34. El Khéchine A., Couderc C., Flaudrops C., Raoult D., Drancourt M. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry identification of mycobacteria in routine clinical practice. PLoS One 2011, 6:e24720.
35. Lotz A., Ferroni A., Beretti J.L., Dauphin B., Carbonnelle E., Guet-Revillet H., et al. Rapid identification of mycobacterial whole cells in solid and liquid culture media by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 2010, 48:4481-4486.
36. Saleeb P.G., Drake S.K., Murray P.R., Zelazny A.M. Identification of mycobacteria in solid-culture media by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 2011, 49:1790-1794.
37. Krishnamurthy T., Ross P.L. Rapid identification of bacteria by direct matrix-assisted laser desorption/ionization mass spectrometric analysis of whole cells. Rapid Commun Mass Spectrom 1996, 10:1992-1996.
38. Dai Y., Li L., Roser D.C., Long S.R. Detection and identification of low-mass peptides and proteins from solvent suspensions of Escherichia coli by high performance liquid chromatography fractionation and matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun Mass Spectrom 1999, 13:73-78.
39. Thorel M.F., Krichevsky M., Lévy-Frébault V.V. Numerical taxonomy of mycobactin-dependent mycobacteria, emended description of Mycobacterium avium, and description of Mycobacterium avium subsp. avium subsp. nov., Mycobacterium avium subsp. paratuberculosis subsp. nov., and Mycobacterium avium subsp. silvaticum subsp. nov. Int J Syst Bacteriol 1990, 40:254-260.