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Volumn 2, Issue 1, 2014, Pages 28-36

Pyrosequencing evaluation of widely available bisulfite conversion methods: Considerations for application

Author keywords

Bisulfite treatment; DNA methylation; Pyrosequencing

Indexed keywords

BISULFITE;

EID: 84924419856     PISSN: None     EISSN: 16645561     Source Type: Journal    
DOI: 10.1159/000358882     Document Type: Article
Times cited : (25)

References (29)
  • 1
    • 77249137168 scopus 로고    scopus 로고
    • Principles and challenges of genomewide DNA methylation analysis
    • Laird PW: Principles and challenges of genomewide DNA methylation analysis. Nat Rev Genet 2010; 11: 191-203.
    • (2010) Nat Rev Genet , vol.11 , pp. 191-203
    • Laird, P.W.1
  • 2
    • 84863511263 scopus 로고    scopus 로고
    • DNA methylation: A timeline of methods and applications
    • Harrison A, Parle-Mcdermott A: DNA methylation: a timeline of methods and applications. Front Genet 2011; 2: 74.
    • (2011) Front Genet , vol.2 , pp. 74
    • Harrison, A.1    Parle-Mcdermott, A.2
  • 4
    • 79952605614 scopus 로고    scopus 로고
    • Disruption of genomic neighbourhood at the imprinted IGF2-H19 locus in Beckwith-Wiedemann syndrome and Silver-Russell syndrome
    • Nativio R, Sparago A, Ito Y, Weksberg R, Riccio A, Murrell A: Disruption of genomic neighbourhood at the imprinted IGF2-H19 locus in Beckwith-Wiedemann syndrome and Silver-Russell syndrome. Hum Mol Genet 2011; 20: 1363-1374.
    • (2011) Hum Mol Genet , vol.20 , pp. 1363-1374
    • Nativio, R.1    Sparago, A.2    Ito, Y.3    Weksberg, R.4    Riccio, A.5    Murrell, A.6
  • 5
    • 77953812571 scopus 로고    scopus 로고
    • Epigenetics and gene expression
    • Gibney ER, Nolan CM: Epigenetics and gene expression. Heredity (Edinb) 2010; 105: 4-13.
    • (2010) Heredity (Edinb) , vol.105 , pp. 4-13
    • Gibney, E.R.1    Nolan, C.M.2
  • 7
    • 0014936031 scopus 로고
    • Reaction of sodium bisulfite with uracil, cytosine, and their derivatives
    • Hayatsu H, Wataya Y, Kai K, Iida S: Reaction of sodium bisulfite with uracil, cytosine, and their derivatives. Biochemistry 1970; 9: 2858-2865.
    • (1970) Biochemistry , vol.9 , pp. 2858-2865
    • Hayatsu, H.1    Wataya, Y.2    Kai, K.3    Iida, S.4
  • 8
    • 0014940938 scopus 로고
    • The addition of sodium bisulfite to uracil and to cytosine
    • Hayatsu H, Wataya Y, Kazushige K: The addition of sodium bisulfite to uracil and to cytosine. J Am Chem Soc 1970; 92: 724-726.
    • (1970) J Am Chem Soc , vol.92 , pp. 724-726
    • Hayatsu, H.1    Wataya, Y.2    Kazushige, K.3
  • 11
    • 58749087364 scopus 로고    scopus 로고
    • Errors in the bisulfite conversion of DNA: Modulating inappropriate-and failed-conversion frequencies
    • Genereux DP, Johnson WC, Burden AF, Stoger R, Laird CD: Errors in the bisulfite conversion of DNA: modulating inappropriate-and failed-conversion frequencies. Nucleic Acids Res 2008; 36:e150.
    • (2008) Nucleic Acids Res , vol.36 , pp. e150
    • Genereux, D.P.1    Johnson, W.C.2    Burden, A.F.3    Stoger, R.4    Laird, C.D.5
  • 12
    • 0035407651 scopus 로고    scopus 로고
    • Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
    • Grunau C, Clark SJ, Rosenthal A: Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. Nucleic Acids Res 2001; 29:E65-65.
    • (2001) Nucleic Acids Res , vol.29 , pp. E65-65
    • Grunau, C.1    Clark, S.J.2    Rosenthal, A.3
  • 14
    • 0030785355 scopus 로고    scopus 로고
    • Epigenetic variation illustrated by DNA methylation patterns of the fragile-X gene FMR1
    • Stoger R, Kajimura TM, Brown WT, Laird CD: Epigenetic variation illustrated by DNA methylation patterns of the fragile-X gene FMR1. Hum Mol Genet 1997; 6: 1791-1801.
    • (1997) Hum Mol Genet , vol.6 , pp. 1791-1801
    • Stoger, R.1    Kajimura, T.M.2    Brown, W.T.3    Laird, C.D.4
  • 15
    • 21044454727 scopus 로고    scopus 로고
    • High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation
    • Shiraishi M, Hayatsu H: High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation. DNA Res 2004; 11: 409-415.
    • (2004) DNA Res , vol.11 , pp. 409-415
    • Shiraishi, M.1    Hayatsu, H.2
  • 17
    • 84881132664 scopus 로고    scopus 로고
    • The prevalence of loss of imprinting of H19 and IGF2 at birth
    • Rancourt RC, Harris HR, Barault L, Michels KB: The prevalence of loss of imprinting of H19 and IGF2 at birth. FASEB J 2013; 27: 3335-3343.
    • (2013) FASEB J , vol.27 , pp. 3335-3343
    • Rancourt, R.C.1    Harris, H.R.2    Barault, L.3    Michels, K.B.4
  • 18
    • 84863576076 scopus 로고    scopus 로고
    • Methylation levels at imprinting control regions are not altered with ovulation induction or in vitro fertilization in a birth cohort
    • Rancourt RC, Harris HR, Michels KB: Methylation levels at imprinting control regions are not altered with ovulation induction or in vitro fertilization in a birth cohort. Hum Reprod 2012; 27: 2208-2216.
    • (2012) Hum Reprod , vol.27 , pp. 2208-2216
    • Rancourt, R.C.1    Harris, H.R.2    Michels, K.B.3
  • 20
    • 27144500218 scopus 로고    scopus 로고
    • Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
    • Meissner A, Gnirke A, Bell GW, Ramsahoye B, Lander ES, Jaenisch R: Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis. Nucleic Acids Res 2005; 33: 5868-5877.
    • (2005) Nucleic Acids Res , vol.33 , pp. 5868-5877
    • Meissner, A.1    Gnirke, A.2    Bell, G.W.3    Ramsahoye, B.4    Lander, E.S.5    Jaenisch, R.6
  • 24
    • 79952788617 scopus 로고    scopus 로고
    • Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
    • Gu H, Smith ZD, Bock C, Boyle P, Gnirke A, Meissner A: Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling. Nat Protoc 2011; 6: 468-481.
    • (2011) Nat Protoc , vol.6 , pp. 468-481
    • Gu, H.1    Smith, Z.D.2    Bock, C.3    Boyle, P.4    Gnirke, A.5    Meissner, A.6
  • 25
    • 77957575151 scopus 로고    scopus 로고
    • Inter-and intraindividual variation in allele-specific DNA methylation and gene expression in children conceived using assisted reproductive technology
    • Turan N, Katari S, Gerson LF, Chalian R, Foster MW, Gaughan JP, Coutifaris C, Sapienza C: Inter-and intraindividual variation in allele-specific DNA methylation and gene expression in children conceived using assisted reproductive technology. PLoS Genet 2010; 6:e1001033.
    • (2010) PLoS Genet , vol.6
    • Turan, N.1    Katari, S.2    Gerson, L.F.3    Chalian, R.4    Foster, M.W.5    Gaughan, J.P.6    Coutifaris, C.7    Sapienza, C.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.