-
1
-
-
77249137168
-
Principles and challenges of genomewide DNA methylation analysis
-
Laird PW: Principles and challenges of genomewide DNA methylation analysis. Nat Rev Genet 2010; 11: 191-203.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 191-203
-
-
Laird, P.W.1
-
2
-
-
84863511263
-
DNA methylation: A timeline of methods and applications
-
Harrison A, Parle-Mcdermott A: DNA methylation: a timeline of methods and applications. Front Genet 2011; 2: 74.
-
(2011)
Front Genet
, vol.2
, pp. 74
-
-
Harrison, A.1
Parle-Mcdermott, A.2
-
3
-
-
34547635650
-
Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells
-
Xu J, Pope SD, Jazirehi AR, Attema JL, Papathanasiou P, Watts JA, Zaret KS, Weissman IL, Smale ST: Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells. Proc Natl Acad Sci USA 2007; 104: 12377-12382.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12377-12382
-
-
Xu, J.1
Pope, S.D.2
Jazirehi, A.R.3
Attema, J.L.4
Papathanasiou, P.5
Watts, J.A.6
Zaret, K.S.7
Weissman, I.L.8
Smale, S.T.9
-
4
-
-
79952605614
-
Disruption of genomic neighbourhood at the imprinted IGF2-H19 locus in Beckwith-Wiedemann syndrome and Silver-Russell syndrome
-
Nativio R, Sparago A, Ito Y, Weksberg R, Riccio A, Murrell A: Disruption of genomic neighbourhood at the imprinted IGF2-H19 locus in Beckwith-Wiedemann syndrome and Silver-Russell syndrome. Hum Mol Genet 2011; 20: 1363-1374.
-
(2011)
Hum Mol Genet
, vol.20
, pp. 1363-1374
-
-
Nativio, R.1
Sparago, A.2
Ito, Y.3
Weksberg, R.4
Riccio, A.5
Murrell, A.6
-
6
-
-
84884828422
-
Recommendations for the design and analysis of epigenome-wide association studies
-
Michels KB, Binder AM, Dedeurwaerder S, Epstein CB, Greally JM, Gut I, Houseman EA, Izzi B, Kelsey KT, Meissner A, Milosavljevic A, Siegmund KD, Bock C, Irizarry RA: Recommendations for the design and analysis of epigenome-wide association studies. Nat Methods 2013; 10: 949-955.
-
(2013)
Nat Methods
, vol.10
, pp. 949-955
-
-
Michels, K.B.1
Binder, A.M.2
Dedeurwaerder, S.3
Epstein, C.B.4
Greally, J.M.5
Gut, I.6
Houseman, E.A.7
Izzi, B.8
Kelsey, K.T.9
Meissner, A.10
Milosavljevic, A.11
Siegmund, K.D.12
Bock, C.13
Irizarry, R.A.14
-
7
-
-
0014936031
-
Reaction of sodium bisulfite with uracil, cytosine, and their derivatives
-
Hayatsu H, Wataya Y, Kai K, Iida S: Reaction of sodium bisulfite with uracil, cytosine, and their derivatives. Biochemistry 1970; 9: 2858-2865.
-
(1970)
Biochemistry
, vol.9
, pp. 2858-2865
-
-
Hayatsu, H.1
Wataya, Y.2
Kai, K.3
Iida, S.4
-
8
-
-
0014940938
-
The addition of sodium bisulfite to uracil and to cytosine
-
Hayatsu H, Wataya Y, Kazushige K: The addition of sodium bisulfite to uracil and to cytosine. J Am Chem Soc 1970; 92: 724-726.
-
(1970)
J Am Chem Soc
, vol.92
, pp. 724-726
-
-
Hayatsu, H.1
Wataya, Y.2
Kazushige, K.3
-
9
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer M, Mcdonald LE, Millar DS, Collis CM, Watt F, Grigg GW, Molloy PL, Paul CL: A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc Natl Acad Sci USA 1992; 89: 1827-1831.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.E.2
Millar, D.S.3
Collis, C.M.4
Watt, F.5
Grigg, G.W.6
Molloy, P.L.7
Paul, C.L.8
-
11
-
-
58749087364
-
Errors in the bisulfite conversion of DNA: Modulating inappropriate-and failed-conversion frequencies
-
Genereux DP, Johnson WC, Burden AF, Stoger R, Laird CD: Errors in the bisulfite conversion of DNA: modulating inappropriate-and failed-conversion frequencies. Nucleic Acids Res 2008; 36:e150.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. e150
-
-
Genereux, D.P.1
Johnson, W.C.2
Burden, A.F.3
Stoger, R.4
Laird, C.D.5
-
12
-
-
0035407651
-
Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
-
Grunau C, Clark SJ, Rosenthal A: Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. Nucleic Acids Res 2001; 29:E65-65.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. E65-65
-
-
Grunau, C.1
Clark, S.J.2
Rosenthal, A.3
-
13
-
-
9144228185
-
Hairpin-bisulfite PCR: Assessing epigenetic methylation patterns on complementary strands of individual DNA molecules
-
Laird CD, Pleasant ND, Clark AD, Sneeden JL, Hassan KM, Manley NC, Vary JC Jr, Morgan T, Hansen RS, Stoger R: Hairpin-bisulfite PCR: assessing epigenetic methylation patterns on complementary strands of individual DNA molecules. Proc Natl Acad Sci USA 2004; 101: 204-209.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 204-209
-
-
Laird, C.D.1
Pleasant, N.D.2
Clark, A.D.3
Sneeden, J.L.4
Hassan, K.M.5
Manley, N.C.6
Vary, J.C.7
Morgan, T.8
Hansen, R.S.9
Stoger, R.10
-
14
-
-
0030785355
-
Epigenetic variation illustrated by DNA methylation patterns of the fragile-X gene FMR1
-
Stoger R, Kajimura TM, Brown WT, Laird CD: Epigenetic variation illustrated by DNA methylation patterns of the fragile-X gene FMR1. Hum Mol Genet 1997; 6: 1791-1801.
-
(1997)
Hum Mol Genet
, vol.6
, pp. 1791-1801
-
-
Stoger, R.1
Kajimura, T.M.2
Brown, W.T.3
Laird, C.D.4
-
15
-
-
21044454727
-
High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation
-
Shiraishi M, Hayatsu H: High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation. DNA Res 2004; 11: 409-415.
-
(2004)
DNA Res
, vol.11
, pp. 409-415
-
-
Shiraishi, M.1
Hayatsu, H.2
-
16
-
-
84862667064
-
Temporal stability of epigenetic markers: Sequence characteristics and predictors of short-term DNA methylation variations
-
Byun HM, Nordio F, Coull BA, Tarantini L, Hou L, Bonzini M, Apostoli P, Bertazzi PA, Baccarelli A: Temporal stability of epigenetic markers: sequence characteristics and predictors of short-term DNA methylation variations. PLoS One 2012; 7:e39220.
-
(2012)
PLoS One
, vol.7
-
-
Byun, H.M.1
Nordio, F.2
Coull, B.A.3
Tarantini, L.4
Hou, L.5
Bonzini, M.6
Apostoli, P.7
Bertazzi, P.A.8
Baccarelli, A.9
-
17
-
-
84881132664
-
The prevalence of loss of imprinting of H19 and IGF2 at birth
-
Rancourt RC, Harris HR, Barault L, Michels KB: The prevalence of loss of imprinting of H19 and IGF2 at birth. FASEB J 2013; 27: 3335-3343.
-
(2013)
FASEB J
, vol.27
, pp. 3335-3343
-
-
Rancourt, R.C.1
Harris, H.R.2
Barault, L.3
Michels, K.B.4
-
18
-
-
84863576076
-
Methylation levels at imprinting control regions are not altered with ovulation induction or in vitro fertilization in a birth cohort
-
Rancourt RC, Harris HR, Michels KB: Methylation levels at imprinting control regions are not altered with ovulation induction or in vitro fertilization in a birth cohort. Hum Reprod 2012; 27: 2208-2216.
-
(2012)
Hum Reprod
, vol.27
, pp. 2208-2216
-
-
Rancourt, R.C.1
Harris, H.R.2
Michels, K.B.3
-
19
-
-
84873589803
-
Leukocyte DNA as surrogate for the evaluation of imprinted Loci methylation in mammary tissue DNA
-
Barault L, Ellsworth RE, Harris HR, Valente AL, Shriver CD, Michels KB: Leukocyte DNA as surrogate for the evaluation of imprinted Loci methylation in mammary tissue DNA. PLoS One 2013; 8:e55896.
-
(2013)
PLoS One
, vol.8
-
-
Barault, L.1
Ellsworth, R.E.2
Harris, H.R.3
Valente, A.L.4
Shriver, C.D.5
Michels, K.B.6
-
20
-
-
27144500218
-
Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
-
Meissner A, Gnirke A, Bell GW, Ramsahoye B, Lander ES, Jaenisch R: Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis. Nucleic Acids Res 2005; 33: 5868-5877.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5868-5877
-
-
Meissner, A.1
Gnirke, A.2
Bell, G.W.3
Ramsahoye, B.4
Lander, E.S.5
Jaenisch, R.6
-
21
-
-
84866860120
-
Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling
-
Boyle P, Clement K, Gu H, Smith ZD, Ziller M, Fostel JL, Holmes L, Meldrim J, Kelley F, Gnirke A, Meissner A: Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling. Genome Biol 2012; 13:R92.
-
(2012)
Genome Biol
, vol.13
, pp. R92
-
-
Boyle, P.1
Clement, K.2
Gu, H.3
Smith, Z.D.4
Ziller, M.5
Fostel, J.L.6
Holmes, L.7
Meldrim, J.8
Kelley, F.9
Gnirke, A.10
Meissner, A.11
-
22
-
-
80053304450
-
High density DNA methylation array with single CpG site resolution
-
Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R: High density DNA methylation array with single CpG site resolution. Genomics 2011; 98: 288-295.
-
(2011)
Genomics
, vol.98
, pp. 288-295
-
-
Bibikova, M.1
Barnes, B.2
Tsan, C.3
Ho, V.4
Klotzle, B.5
Le, J.M.6
Delano, D.7
Zhang, L.8
Schroth, G.P.9
Gunderson, K.L.10
Fan, J.B.11
Shen, R.12
-
23
-
-
84856306090
-
Genome-wide DNA methylation profiling using Infinium(R) assay
-
Bibikova M, Le J, Barnes B, Saedinia-Melnyk S, Zhou L, Shen R, Gunderson KL: Genome-wide DNA methylation profiling using Infinium(R) assay. Epigenomics 2009; 1: 177-200.
-
(2009)
Epigenomics
, vol.1
, pp. 177-200
-
-
Bibikova, M.1
Le, J.2
Barnes, B.3
Saedinia-Melnyk, S.4
Zhou, L.5
Shen, R.6
Gunderson, K.L.7
-
24
-
-
79952788617
-
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
-
Gu H, Smith ZD, Bock C, Boyle P, Gnirke A, Meissner A: Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling. Nat Protoc 2011; 6: 468-481.
-
(2011)
Nat Protoc
, vol.6
, pp. 468-481
-
-
Gu, H.1
Smith, Z.D.2
Bock, C.3
Boyle, P.4
Gnirke, A.5
Meissner, A.6
-
25
-
-
77957575151
-
Inter-and intraindividual variation in allele-specific DNA methylation and gene expression in children conceived using assisted reproductive technology
-
Turan N, Katari S, Gerson LF, Chalian R, Foster MW, Gaughan JP, Coutifaris C, Sapienza C: Inter-and intraindividual variation in allele-specific DNA methylation and gene expression in children conceived using assisted reproductive technology. PLoS Genet 2010; 6:e1001033.
-
(2010)
PLoS Genet
, vol.6
-
-
Turan, N.1
Katari, S.2
Gerson, L.F.3
Chalian, R.4
Foster, M.W.5
Gaughan, J.P.6
Coutifaris, C.7
Sapienza, C.8
-
26
-
-
79960927422
-
Increased methylation variation in epigenetic domains across cancer types
-
Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, Mcdonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP: Increased methylation variation in epigenetic domains across cancer types. Nat Genet 2011; 43: 768-775.
-
(2011)
Nat Genet
, vol.43
, pp. 768-775
-
-
Hansen, K.D.1
Timp, W.2
Bravo, H.C.3
Sabunciyan, S.4
Langmead, B.5
McDonald, O.G.6
Wen, B.7
Wu, H.8
Liu, Y.9
Diep, D.10
Briem, E.11
Zhang, K.12
Irizarry, R.A.13
Feinberg, A.P.14
-
27
-
-
84858828509
-
Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation
-
Teschendorff AE, Jones A, Fiegl H, Sargent A, Zhuang JJ, Kitchener HC, Widschwendter M: Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation. Genome Med 2012; 4: 24.
-
(2012)
Genome Med
, vol.4
, pp. 24
-
-
Teschendorff, A.E.1
Jones, A.2
Fiegl, H.3
Sargent, A.4
Zhuang, J.J.5
Kitchener, H.C.6
Widschwendter, M.7
-
28
-
-
77949533111
-
An epigenetic signature in peripheral blood predicts active ovarian cancer
-
Teschendorff AE, Menon U, Gentry-Maharaj A, Ramus SJ, Gayther SA, Apostolidou S, Jones A, Lechner M, Beck S, Jacobs IJ, Widschwendter M: An epigenetic signature in peripheral blood predicts active ovarian cancer. PLoS One 2009; 4:e8274.
-
(2009)
PLoS One
, vol.4
, pp. e8274
-
-
Teschendorff, A.E.1
Menon, U.2
Gentry-Maharaj, A.3
Ramus, S.J.4
Gayther, S.A.5
Apostolidou, S.6
Jones, A.7
Lechner, M.8
Beck, S.9
Jacobs, I.J.10
Widschwendter, M.11
-
29
-
-
84861839425
-
Methylation defect in imprinted genes detected in patients with an Albright's hereditary osteodystrophy like phenotype and platelet Gs hypofunction
-
Izzi B, Francois I, Labarque V, Thys C, Wittevrongel C, Devriendt K, Legius E, Van Den Bruel A, D'hooghe M, Lambrechts D, De Zegher F, Van Geet C, Freson K: Methylation defect in imprinted genes detected in patients with an Albright's hereditary osteodystrophy like phenotype and platelet Gs hypofunction. PLoS One 2012; 7:e38579.
-
(2012)
PLoS One
, vol.7
-
-
Izzi, B.1
Francois, I.2
Labarque, V.3
Thys, C.4
Wittevrongel, C.5
Devriendt, K.6
Legius, E.7
Van Den Bruel, A.8
D'hooghe, M.9
Lambrechts, D.10
De Zegher, F.11
Van Geet, C.12
Freson, K.13
|