-
1
-
-
4644242349
-
RNA silencing in plants
-
Baulcombe D: RNA silencing in plants. Nature 2004, 431:356-363. 10.1038/nature02874.
-
(2004)
Nature
, vol.431
, pp. 356-363
-
-
Baulcombe, D.1
-
2
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O: Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136:669-687. 10.1016/j.cell.2009.01.046.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
3
-
-
55049113363
-
Evolution of microRNAs and their targets: are all microRNAs biologically relevant?
-
Axtell MJ: Evolution of microRNAs and their targets: are all microRNAs biologically relevant? Biochim Biophys Acta 2008, 1779:725-734. 10.1016/j.bbagrm.2008.02.007.
-
(2008)
Biochim Biophys Acta
, vol.1779
, pp. 725-734
-
-
Axtell, M.J.1
-
4
-
-
79953086307
-
Evolution and Functional Diversification of MIRNA Genes
-
Cuperus JT, Fahlgren N, Carrington JC: Evolution and Functional Diversification of MIRNA Genes. Plant Cell 2011, 23:431-442. 10.1105/tpc.110.082784.
-
(2011)
Plant Cell
, vol.23
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
5
-
-
82955207556
-
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
-
Zhai J, Jeong D-H, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC: MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev 2011, 25:2540-2553. 10.1101/gad.177527.111.
-
(2011)
Genes Dev
, vol.25
, pp. 2540-2553
-
-
Zhai, J.1
Jeong, D.-H.2
De Paoli, E.3
Park, S.4
Rosen, B.D.5
Li, Y.6
Gonzalez, A.J.7
Yan, Z.8
Kitto, S.L.9
Grusak, M.A.10
Jackson, S.A.11
Stacey, G.12
Cook, D.R.13
Green, P.J.14
Sherrier, D.J.15
Meyers, B.C.16
-
6
-
-
84860126087
-
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs
-
Shivaprasad PV, Chen H-M, Patel K, Bond DM, Santos BACM, Baulcombe DC: A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell 2012, 24:859-74. 10.1105/tpc.111.095380.
-
(2012)
Plant Cell
, vol.24
, pp. 859-874
-
-
Shivaprasad, P.V.1
Chen, H.-M.2
Patel, K.3
Bond, D.M.4
Santos, B.A.C.M.5
Baulcombe, D.C.6
-
7
-
-
84863393281
-
MicroRNA regulation of plant innate immune receptors
-
Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B: MicroRNA regulation of plant innate immune receptors. Proc Natl Acad Sci 2012, 109:1790-1795. 10.1073/pnas.1118282109.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 1790-1795
-
-
Li, F.1
Pignatta, D.2
Bendix, C.3
Brunkard, J.O.4
Cohn, M.M.5
Tung, J.6
Sun, H.7
Kumar, P.8
Baker, B.9
-
8
-
-
84894472195
-
Evolutionary history of plant microRNAs
-
Taylor RS, Tarver JE, Hiscock SJ, Donoghue PCJ: Evolutionary history of plant microRNAs. Trends Plant Sci 2014, 19:175-182. 10.1016/j.tplants.2013.11.008.
-
(2014)
Trends Plant Sci
, vol.19
, pp. 175-182
-
-
Taylor, R.S.1
Tarver, J.E.2
Hiscock, S.J.3
Donoghue, P.C.J.4
-
9
-
-
34848898946
-
Conservation and evolution of miRNA regulatory programs in plant development
-
Willmann MR, Poethig RS: Conservation and evolution of miRNA regulatory programs in plant development. Curr Opin Plant Biol 2007, 10:503-511. 10.1016/j.pbi.2007.07.004.
-
(2007)
Curr Opin Plant Biol
, vol.10
, pp. 503-511
-
-
Willmann, M.R.1
Poethig, R.S.2
-
10
-
-
84865423169
-
Conservation and divergence in plant microRNAs
-
Jones-Rhoades MW: Conservation and divergence in plant microRNAs. Plant Mol Biol 2012, 80:3-16. 10.1007/s11103-011-9829-2.
-
(2012)
Plant Mol Biol
, vol.80
, pp. 3-16
-
-
Jones-Rhoades, M.W.1
-
11
-
-
57049169777
-
Evolution of Arabidopsis thaliana microRNAs from random sequences
-
Felippes FF, Schneeberger K, Dezulian T, Huson DH, Weigel D: Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA 2008, 14:2455-2459. 10.1261/rna.1149408.
-
(2008)
RNA
, vol.14
, pp. 2455-2459
-
-
Felippes, F.F.1
Schneeberger, K.2
Dezulian, T.3
Huson, D.H.4
Weigel, D.5
-
12
-
-
84899487011
-
Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs
-
Montes RAC, de Fátima Rosas-Cárdenas F, De Paoli E, Accerbi M, Rymarquis LA, Mahalingam G, Marsch-Martínez N, Meyers BC, Green PJ, de Folter S: Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs. Nat Commun 2014, 5:3722.
-
(2014)
Nat Commun
, vol.5
, pp. 3722
-
-
Montes, R.A.C.1
de Fátima Rosas-Cárdenas, F.2
De Paoli, E.3
Accerbi, M.4
Rymarquis, L.A.5
Mahalingam, G.6
Marsch-Martínez, N.7
Meyers, B.C.8
Green, P.J.9
de Folter, S.10
-
13
-
-
0038076109
-
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation
-
Xie Z, Kasschau KD, Carrington JC: Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 2003, 13:784-789. 10.1016/S0960-9822(03)00281-1.
-
(2003)
Curr Biol
, vol.13
, pp. 784-789
-
-
Xie, Z.1
Kasschau, K.D.2
Carrington, J.C.3
-
14
-
-
46149088681
-
Plant ARGONAUTES
-
Vaucheret H: Plant ARGONAUTES. Trends Plant Sci 2008, 13:350-358. 10.1016/j.tplants.2008.04.007.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 350-358
-
-
Vaucheret, H.1
-
15
-
-
2442650370
-
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
-
Vaucheret H, Vazquez F, Crete P, Bartel DP: The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 2004, 18:1187-1197. 10.1101/gad.1201404.
-
(2004)
Genes Dev
, vol.18
, pp. 1187-1197
-
-
Vaucheret, H.1
Vazquez, F.2
Crete, P.3
Bartel, D.P.4
-
16
-
-
77958461762
-
Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation
-
Várallyay E, Válóczi A, Agyi A, Burgyán J, Havelda Z: Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation. EMBO J 2010, 29:3507-3519. 10.1038/emboj.2010.215.
-
(2010)
EMBO J
, vol.29
, pp. 3507-3519
-
-
Várallyay, E.1
Válóczi, A.2
Agyi, A.3
Burgyán, J.4
Havelda, Z.5
-
17
-
-
79551631627
-
An Antiviral Defense Role of AGO2 in Plants
-
Harvey JJW, Lewsey MG, Patel K, Westwood J, Heimstadt S, Carr JP, Baulcombe DC: An Antiviral Defense Role of AGO2 in Plants. PLoS One 2011., 6:
-
(2011)
PLoS One
, vol.6
-
-
Harvey, J.J.W.1
Lewsey, M.G.2
Patel, K.3
Westwood, J.4
Heimstadt, S.5
Carr, J.P.6
Baulcombe, D.C.7
-
18
-
-
24044495304
-
Maintenance, symptoms and distribution of potato viruses X, S, Y, A, M and leafroll in potato tissue culture plantlets
-
McMorran JP, Allen TC: Maintenance, symptoms and distribution of potato viruses X, S, Y, A, M and leafroll in potato tissue culture plantlets. Am PotatoJ 1983, 60:839-848. 10.1007/BF02853973.
-
(1983)
Am PotatoJ
, vol.60
, pp. 839-848
-
-
McMorran, J.P.1
Allen, T.C.2
-
19
-
-
17444430392
-
microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants
-
Allen E, Xie Z, Gustafson AM, Carrington JC: microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants. Cell 2005, 121:207-221. 10.1016/j.cell.2005.04.004.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
20
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP: Prediction of plant microRNA targets. Cell 2002, 110:513-520. 10.1016/S0092-8674(02)00863-2.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
21
-
-
33745271035
-
Functions of micro-RNAs and related small RNAs in plants
-
Mallory AC, Vaucheret H: Functions of micro-RNAs and related small RNAs in plants. Nat Genet Suppl 2006, 38:S31. 10.1038/ng1791.
-
(2006)
Nat Genet Suppl
, vol.38
, pp. S31
-
-
Mallory, A.C.1
Vaucheret, H.2
-
22
-
-
33645967150
-
AGO1 Homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1
-
Vaucheret H, Mallory AC, Bartel DP: AGO1 Homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. Mol Cell 2006, 22:129-136. 10.1016/j.molcel.2006.03.011.
-
(2006)
Mol Cell
, vol.22
, pp. 129-136
-
-
Vaucheret, H.1
Mallory, A.C.2
Bartel, D.P.3
-
23
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie Z, Gustafson AM, Sung G-H, Spatafora JW, Carrington JC: Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 2004, 36:1282-1290. 10.1038/ng1478.
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.-H.4
Spatafora, J.W.5
Carrington, J.C.6
-
24
-
-
56649102410
-
Evolution of Arabidopsis MIR genes generates novel microRNA classes
-
Vazquez F, Blevins T, Ailhas J, Boller T, Meins F: Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res 2008, 36:6429-6438. 10.1093/nar/gkn670.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6429-6438
-
-
Vazquez, F.1
Blevins, T.2
Ailhas, J.3
Boller, T.4
Meins, F.5
-
25
-
-
79959967431
-
psRNATarget: a plant small RNA target analysis server
-
Dai XB, Zhao PX: psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011, 39:W155-W159. 10.1093/nar/gkr319.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W155-W159
-
-
Dai, X.B.1
Zhao, P.X.2
-
26
-
-
77954184918
-
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
-
Bonnet E, He Y, Billiau K, Van de Peer Y: TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. Bioinformatics 2010, 26:1566-1568. 10.1093/bioinformatics/btq233.
-
(2010)
Bioinformatics
, vol.26
, pp. 1566-1568
-
-
Bonnet, E.1
He, Y.2
Billiau, K.3
Van de Peer, Y.4
-
27
-
-
84900846639
-
Comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction
-
Srivastava PK, Moturu TR, Pandey P, Baldwin IT, Pandey SP: Comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction. BMC G 2014, 15:348. 10.1186/1471-2164-15-348.
-
(2014)
BMC G
, vol.15
, pp. 348
-
-
Srivastava, P.K.1
Moturu, T.R.2
Pandey, P.3
Baldwin, I.T.4
Pandey, S.P.5
-
28
-
-
76249106402
-
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
-
Tang H, Bowers JE, Wang X, Paterson AH: Angiosperm genome comparisons reveal early polyploidy in the monocot lineage. Proc Natl Acad Sci U S A 2010, 107:472-477. 10.1073/pnas.0908007107.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 472-477
-
-
Tang, H.1
Bowers, J.E.2
Wang, X.3
Paterson, A.H.4
-
29
-
-
84860602170
-
On the complexity of miRNA-mediated regulation in plants: novel insights into the genomic organization of plant miRNAs
-
Colaiacovo M, Lamontanara A, Bernardo L, Alberici R, Crosatti C, Giusti L, Cattivelli L, Faccioli P: On the complexity of miRNA-mediated regulation in plants: novel insights into the genomic organization of plant miRNAs. Biology Direct 2007, 7:15.
-
(2007)
Biology Direct
, vol.7
, pp. 15
-
-
Colaiacovo, M.1
Lamontanara, A.2
Bernardo, L.3
Alberici, R.4
Crosatti, C.5
Giusti, L.6
Cattivelli, L.7
Faccioli, P.8
-
30
-
-
73449126830
-
RNA Secondary Structural Determinants of miRNA Precursor Processing in Arabidopsis
-
Song L, Axtell MJ, Fedoroff NV: RNA Secondary Structural Determinants of miRNA Precursor Processing in Arabidopsis. Curr Biol 2010, 20:37-41. 10.1016/j.cub.2009.10.076.
-
(2010)
Curr Biol
, vol.20
, pp. 37-41
-
-
Song, L.1
Axtell, M.J.2
Fedoroff, N.V.3
-
31
-
-
34250729886
-
Origin and evolution of human microRNAs from transposable elements
-
Piriyapongsa J, Mariño-Ramírez L, Jordan IK: Origin and evolution of human microRNAs from transposable elements. Genetics 2007, 176:1323-1337.
-
(2007)
Genetics
, vol.176
, pp. 1323-1337
-
-
Piriyapongsa, J.1
Mariño-Ramírez, L.2
Jordan, I.K.3
-
32
-
-
52949088691
-
A toolkit for analysing large-scale plant small RNA datasets
-
Moxon S, Schwach F, Dalmay T, MacLean D, Studholme DJ, Moulton V: A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics 2008, 24:2252-2253. 10.1093/bioinformatics/btn428.
-
(2008)
Bioinformatics
, vol.24
, pp. 2252-2253
-
-
Moxon, S.1
Schwach, F.2
Dalmay, T.3
MacLean, D.4
Studholme, D.J.5
Moulton, V.6
-
33
-
-
34548474870
-
The Polerovirus Silencing Suppressor P0 Targets ARGONAUTE Proteins for Degradation
-
Baumberger N, Tsai C-H, Lie M, Havecker E, Ziegler-Graff V, Baulcombe DC: The Polerovirus Silencing Suppressor P0 Targets ARGONAUTE Proteins for Degradation. Curr Biol 2007, 17:1609-1614. 10.1016/j.cub.2007.08.039.
-
(2007)
Curr Biol
, vol.17
, pp. 1609-1614
-
-
Baumberger, N.1
Tsai, C.-H.2
Lie, M.3
Havecker, E.4
Ziegler-Graff, V.5
Baulcombe, D.C.6
-
34
-
-
0842280598
-
Viral suppression of RNA silencing in plants
-
Moissiard G, Voinnet O: Viral suppression of RNA silencing in plants. Mol Plant Pathol 2004, 5:71-82. 10.1111/j.1364-3703.2004.00207.x.
-
(2004)
Mol Plant Pathol
, vol.5
, pp. 71-82
-
-
Moissiard, G.1
Voinnet, O.2
-
35
-
-
2442681764
-
Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step
-
Chapman EJ, Prokhnevsky AI, Gopinath K, Dolja V, Carrington JC: Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev 2004, 18:1179-1186. 10.1101/gad.1201204.
-
(2004)
Genes Dev
, vol.18
, pp. 1179-1186
-
-
Chapman, E.J.1
Prokhnevsky, A.I.2
Gopinath, K.3
Dolja, V.4
Carrington, J.C.5
-
36
-
-
77951862235
-
Argonaute quenching and global changes in Dicer homeostasis caused by a pathogen-encoded GW repeat protein
-
Azevedo J, Garcia D, Pontier D, Ohnesorge S, Yu A, Garcia S, Braun L, Bergdoll M, Hakimi MA, Lagrange T, Voinnet O: Argonaute quenching and global changes in Dicer homeostasis caused by a pathogen-encoded GW repeat protein. Genes Dev 2010, 24:904-915. 10.1101/gad.1908710.
-
(2010)
Genes Dev
, vol.24
, pp. 904-915
-
-
Azevedo, J.1
Garcia, D.2
Pontier, D.3
Ohnesorge, S.4
Yu, A.5
Garcia, S.6
Braun, L.7
Bergdoll, M.8
Hakimi, M.A.9
Lagrange, T.10
Voinnet, O.11
-
37
-
-
80052339278
-
Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
-
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y: Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors. PLoS Pathog 2011, 7:e1002176. 10.1371/journal.ppat.1002176.
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002176
-
-
Du, P.1
Wu, J.2
Zhang, J.3
Zhao, S.4
Zheng, H.5
Gao, G.6
Wei, L.7
Li, Y.8
-
38
-
-
79952979223
-
Relationship between symptoms and gene expression induced by the infection of three strains of Rice dwarf virus
-
Satoh K, Shimizu T, Kondoh H, Hiraguri A, Sasaya T, Choi IR, Omura T, Kikuchi S: Relationship between symptoms and gene expression induced by the infection of three strains of Rice dwarf virus. PLoS One 2011, 6:e18094. 10.1371/journal.pone.0018094.
-
(2011)
PLoS One
, vol.6
, pp. e18094
-
-
Satoh, K.1
Shimizu, T.2
Kondoh, H.3
Hiraguri, A.4
Sasaya, T.5
Choi, I.R.6
Omura, T.7
Kikuchi, S.8
-
39
-
-
43149096961
-
In silico identification of conserved microRNAs in large number of diverse plant species
-
Sunkar R, Jagadeeswaran G: In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 2008, 8:37. 10.1186/1471-2229-8-37.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 37
-
-
Sunkar, R.1
Jagadeeswaran, G.2
-
40
-
-
84883051891
-
The integrative expression and co-expression analysis of the AGO gene family in rice
-
Yang Y, Zhong J, YDan O, Yao J: The integrative expression and co-expression analysis of the AGO gene family in rice. Gene 2013, 528:221-235. 10.1016/j.gene.2013.07.002.
-
(2013)
Gene
, vol.528
, pp. 221-235
-
-
Yang, Y.1
Zhong, J.2
YDan, O.3
Yao, J.4
-
41
-
-
55249089227
-
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice
-
Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S: Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice. BMC Genomics 2008, 9:451. 10.1186/1471-2164-9-451.
-
(2008)
BMC Genomics
, vol.9
, pp. 451
-
-
Kapoor, M.1
Arora, R.2
Lama, T.3
Nijhawan, A.4
Khurana, J.P.5
Tyagi, A.K.6
Kapoor, S.7
-
42
-
-
84883454804
-
Reconstructing de novo silencing of an active plant retrotransposon
-
Marí-Ordóñez A, Marchais A, Etcheverry M, Martin A, Colot V, Voinnet O: Reconstructing de novo silencing of an active plant retrotransposon. Nat Genet 2013, 45:1029-39. 10.1038/ng.2703.
-
(2013)
Nat Genet
, vol.45
, pp. 1029-1039
-
-
Marí-Ordóñez, A.1
Marchais, A.2
Etcheverry, M.3
Martin, A.4
Colot, V.5
Voinnet, O.6
-
43
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S: miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 2011, 39:D152-D157. 10.1093/nar/gkq1027.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
44
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ: miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 2006, 34:D140-D144. 10.1093/nar/gkj112.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D140-D144
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
45
-
-
36448991500
-
Clustal W and clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG: Clustal W and clustal X version 2.0. Bioinformatics 2007, 23:2947-2948. 10.1093/bioinformatics/btm404.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
46
-
-
48449090786
-
NCBI BLAST: a better web interface
-
Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, Madden TL: NCBI BLAST: a better web interface. Nucleic Acids Res 2008, 36:W5-9. 10.1093/nar/gkn235.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W5-W9
-
-
Johnson, M.1
Zaretskaya, I.2
Raytselis, Y.3
Merezhuk, Y.4
McGinnis, S.5
Madden, T.L.6
-
47
-
-
38849134327
-
The SGN comparative map viewer
-
Mueller LA, Mills AA, Skwarecki B, Buels RM, Menda N, Tanksley SD: The SGN comparative map viewer. Bioinformatics 2008, 24:422-423. 10.1093/bioinformatics/btm597.
-
(2008)
Bioinformatics
, vol.24
, pp. 422-423
-
-
Mueller, L.A.1
Mills, A.A.2
Skwarecki, B.3
Buels, R.M.4
Menda, N.5
Tanksley, S.D.6
-
48
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt KD, Tatusova T, Maglott DR: NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 2007, 35:D61-65.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D61-65
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
49
-
-
33846064113
-
NCBI GEO: Mining tens of millions of expression profiles - Database and tools update
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R: NCBI GEO: Mining tens of millions of expression profiles - Database and tools update. Nucleic Acids Res 2007, 35:D76-765. 10.1093/nar/gkl648.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D76-765
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
-
50
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210. 10.1093/nar/30.1.207.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
51
-
-
34447121300
-
Identification of novel small RNAs in tomato (Solanum lycopersicum).
-
Planta, 10.100
-
Pilcher RLR, Moxon S, Pakseresht N, Moulton V, Manning K, Seymour G, Dalmay T: Identification of novel small RNAs in tomato (Solanum lycopersicum). Planta 2007. doi:10.100.
-
(2007)
-
-
Pilcher, R.L.R.1
Moxon, S.2
Pakseresht, N.3
Moulton, V.4
Manning, K.5
Seymour, G.6
Dalmay, T.7
-
52
-
-
77950342461
-
The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci
-
Havecker ER, Wallbridge LM, Hardcastle TJ, Bush MS, Kelly KA, Dunn RM, Schwach F, Doonan JH, Baulcombe DC: The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci. Plant Cell 2010, 22:321-334. 10.1105/tpc.109.072199.
-
(2010)
Plant Cell
, vol.22
, pp. 321-334
-
-
Havecker, E.R.1
Wallbridge, L.M.2
Hardcastle, T.J.3
Bush, M.S.4
Kelly, K.A.5
Dunn, R.M.6
Schwach, F.7
Doonan, J.H.8
Baulcombe, D.C.9
-
53
-
-
77953217767
-
Arabidopsis lyrata Small RNAs: Transient MIRNA and Small Interfering RNA Loci within the Arabidopsis Genus
-
Ma ZR, Coruh C, Axtell MJ: Arabidopsis lyrata Small RNAs: Transient MIRNA and Small Interfering RNA Loci within the Arabidopsis Genus. Plant Cell 2010, 22:1090-1103. 10.1105/tpc.110.073882.
-
(2010)
Plant Cell
, vol.22
, pp. 1090-1103
-
-
Ma, Z.R.1
Coruh, C.2
Axtell, M.J.3
-
54
-
-
77952403409
-
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells
-
Molnar A, Melnyk CW, Bassett A, Hardcastle TJ, Dunn R, Baulcombe DC: Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells. Science 2010, 328:872-875. 10.1126/science.1187959.
-
(2010)
Science
, vol.328
, pp. 872-875
-
-
Molnar, A.1
Melnyk, C.W.2
Bassett, A.3
Hardcastle, T.J.4
Dunn, R.5
Baulcombe, D.C.6
-
55
-
-
80051564048
-
Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase
-
Wang C, Wang XC, Kibet NK, Song CN, Zhang CQ, Li XY, Han J, Fang JG: Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase. Physiol Plant 2011, 143:64-81. 10.1111/j.1399-3054.2011.01481.x.
-
(2011)
Physiol Plant
, vol.143
, pp. 64-81
-
-
Wang, C.1
Wang, X.C.2
Kibet, N.K.3
Song, C.N.4
Zhang, C.Q.5
Li, X.Y.6
Han, J.7
Fang, J.G.8
-
56
-
-
84857189983
-
Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs
-
Shivaprasad PV, Dunn RM, Santos BA, Bassett A, Baulcombe DC: Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs. EMBO J 2012, 31:257-266. 10.1038/emboj.2011.458.
-
(2012)
EMBO J
, vol.31
, pp. 257-266
-
-
Shivaprasad, P.V.1
Dunn, R.M.2
Santos, B.A.3
Bassett, A.4
Baulcombe, D.C.5
-
57
-
-
84856288115
-
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
-
Song X, Li P, Zhai J, Zhou M, Ma L, Liu B, Jeong DH, Nakano M, Cao S, Liu C, Chu C, Wang XJ, Green PJ, Meyers BC, Cao X: Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. Plant J 2011, 69:462-474.
-
(2011)
Plant J
, vol.69
, pp. 462-474
-
-
Song, X.1
Li, P.2
Zhai, J.3
Zhou, M.4
Ma, L.5
Liu, B.6
Jeong, D.H.7
Nakano, M.8
Cao, S.9
Liu, C.10
Chu, C.11
Wang, X.J.12
Green, P.J.13
Meyers, B.C.14
Cao, X.15
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