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Volumn 15, Issue 1, 2014, Pages

Genome-wide Twist1 occupancy in endocardial cushion cells, embryonic limb buds, and peripheral nerve sheath tumor cells

Author keywords

ChIP; ChIP seq; Endocardial cushions; Limb buds; Peripheral neuron sheath tumor cells; Twist1

Indexed keywords

BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR TWIST1; UNCLASSIFIED DRUG; WNT PROTEIN; NUCLEAR PROTEIN; PROTEIN BINDING; TRANSCRIPTION FACTOR TWIST; TWIST1 PROTEIN, MOUSE;

EID: 84924178658     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-821     Document Type: Article
Times cited : (13)

References (49)
  • 1
    • 0028933142 scopus 로고
    • Twist is required in head mesenchyme for cranial neural tube morphogenesis
    • Chen ZF, Behringer RR: Twist is required in head mesenchyme for cranial neural tube morphogenesis. Genes Dev 1995, 9(6):686-699.
    • (1995) Genes Dev , vol.9 , Issue.6 , pp. 686-699
    • Chen, Z.F.1    Behringer, R.R.2
  • 2
    • 43049141480 scopus 로고    scopus 로고
    • Twist1 function in endocardial cushion cell proliferation, migration, and differentiation during heart valve development
    • Shelton EL, Yutzey KE: Twist1 function in endocardial cushion cell proliferation, migration, and differentiation during heart valve development. Dev Biol 2008, 317(1):282-295.
    • (2008) Dev Biol , vol.317 , Issue.1 , pp. 282-295
    • Shelton, E.L.1    Yutzey, K.E.2
  • 3
    • 34848869715 scopus 로고    scopus 로고
    • Mutations within helix I of Twist1 result in distinct limb defects and variation of DNA binding affinities
    • Firulli BA, Redick BA, Conway SJ, Firulli AB: Mutations within helix I of Twist1 result in distinct limb defects and variation of DNA binding affinities. J Biol Chem 2007, 282(37):27536-27546.
    • (2007) J Biol Chem , vol.282 , Issue.37 , pp. 27536-27546
    • Firulli, B.A.1    Redick, B.A.2    Conway, S.J.3    Firulli, A.B.4
  • 4
    • 70350012437 scopus 로고    scopus 로고
    • A twist of insight-the role of Twist-family bHLH factors in development
    • Barnes RM, Firulli AB: A twist of insight-the role of Twist-family bHLH factors in development. Int J Dev Biol 2009, 53(7):909-924.
    • (2009) Int J Dev Biol , vol.53 , Issue.7 , pp. 909-924
    • Barnes, R.M.1    Firulli, A.B.2
  • 5
    • 84855279824 scopus 로고    scopus 로고
    • Twist1 directly regulates genes that promote cell proliferation and migration in developing heart valves
    • Lee MP, Yutzey KE: Twist1 directly regulates genes that promote cell proliferation and migration in developing heart valves. PLoS One 2011, 6(12):e29758.
    • (2011) PLoS One , vol.6 , Issue.12
    • Lee, M.P.1    Yutzey, K.E.2
  • 6
    • 84855478714 scopus 로고    scopus 로고
    • Normal and disease-related biological functions of Twist1 and underlying molecular mechanisms
    • Qin Q, Xu Y, He T, Qin C, Xu J: Normal and disease-related biological functions of Twist1 and underlying molecular mechanisms. Cell Res 2012, 22(1):90-106.
    • (2012) Cell Res , vol.22 , Issue.1 , pp. 90-106
    • Qin, Q.1    Xu, Y.2    He, T.3    Qin, C.4    Xu, J.5
  • 7
    • 79551611520 scopus 로고    scopus 로고
    • Differential expression of cartilage and bone-related proteins in pediatric and adult diseased aortic valves
    • Wirrig EE, Hinton RB, Yutzey KE: Differential expression of cartilage and bone-related proteins in pediatric and adult diseased aortic valves. J Mol Cell Cardiol 2011, 50(3):561-569.
    • (2011) J Mol Cell Cardiol , vol.50 , Issue.3 , pp. 561-569
    • Wirrig, E.E.1    Hinton, R.B.2    Yutzey, K.E.3
  • 8
    • 84872899556 scopus 로고    scopus 로고
    • The mesenchymal architecture of the cranial mesoderm of mouse embryos is disrupted by the loss of Twist1 function
    • Bildsoe H, Loebel DA, Jones VJ, Hor AC, Braithwaite AW, Chen YT, Behringer RR, Tam PP: The mesenchymal architecture of the cranial mesoderm of mouse embryos is disrupted by the loss of Twist1 function. Dev Biol 2013, 374(2):295-307.
    • (2013) Dev Biol , vol.374 , Issue.2 , pp. 295-307
    • Bildsoe, H.1    Loebel, D.A.2    Jones, V.J.3    Hor, A.C.4    Braithwaite, A.W.5    Chen, Y.T.6    Behringer, R.R.7    Tam, P.P.8
  • 9
    • 77957298092 scopus 로고    scopus 로고
    • Twist1 promotes heart valve cell proliferation and extracellular matrix gene expression during development in vivo and is expressed in human diseased aortic valves
    • Chakraborty S, Wirrig EE, Hinton RB, Merrill WH, Spicer DB, Yutzey KE: Twist1 promotes heart valve cell proliferation and extracellular matrix gene expression during development in vivo and is expressed in human diseased aortic valves. Dev Biol 2010, 347(1):167-179.
    • (2010) Dev Biol , vol.347 , Issue.1 , pp. 167-179
    • Chakraborty, S.1    Wirrig, E.E.2    Hinton, R.B.3    Merrill, W.H.4    Spicer, D.B.5    Yutzey, K.E.6
  • 10
    • 56149107960 scopus 로고    scopus 로고
    • Shared gene expression profiles in developing heart valves and osteoblast progenitor cells
    • Chakraborty S, Cheek J, Sakthivel B, Aronow BJ, Yutzey KE: Shared gene expression profiles in developing heart valves and osteoblast progenitor cells. Physiol Genomics 2008, 35(1):75-85.
    • (2008) Physiol Genomics , vol.35 , Issue.1 , pp. 75-85
    • Chakraborty, S.1    Cheek, J.2    Sakthivel, B.3    Aronow, B.J.4    Yutzey, K.E.5
  • 13
    • 77953228964 scopus 로고    scopus 로고
    • TWISTing an embryonic transcription factor into an oncoprotein
    • Ansieau S, Morel AP, Hinkal G, Bastid J, Puisieux A: TWISTing an embryonic transcription factor into an oncoprotein. Oncogene 2010, 29(22):3173-3184.
    • (2010) Oncogene , vol.29 , Issue.22 , pp. 3173-3184
    • Ansieau, S.1    Morel, A.P.2    Hinkal, G.3    Bastid, J.4    Puisieux, A.5
  • 15
    • 0037012848 scopus 로고    scopus 로고
    • Neurofibromas in NF1: Schwann cell origin and role of tumor environment
    • Zhu Y, Ghosh P, Charnay P, Burns DK, Parada LF: Neurofibromas in NF1: Schwann cell origin and role of tumor environment. Science 2002, 296(5569):920-922.
    • (2002) Science , vol.296 , Issue.5569 , pp. 920-922
    • Zhu, Y.1    Ghosh, P.2    Charnay, P.3    Burns, D.K.4    Parada, L.F.5
  • 17
    • 59949105114 scopus 로고    scopus 로고
    • Gene expression profiling in TWIST-depleted gastric cancer cells
    • Feng MY, Wang K, Shi QT, Yu XW, Geng JS: Gene expression profiling in TWIST-depleted gastric cancer cells. Anat Rec 2009, 292(2):262-270.
    • (2009) Anat Rec , vol.292 , Issue.2 , pp. 262-270
    • Feng, M.Y.1    Wang, K.2    Shi, Q.T.3    Yu, X.W.4    Geng, J.S.5
  • 18
    • 84883587895 scopus 로고    scopus 로고
    • PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments
    • Zambelli F, Pesole G, Pavesi G: PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments. Nucleic Acids Res 2013, 41(Web Server issue):W535-W543.
    • (2013) Nucleic Acids Res , vol.41 , Issue.WEB SERVER ISSUE , pp. W535-W543
    • Zambelli, F.1    Pesole, G.2    Pavesi, G.3
  • 19
    • 79958117256 scopus 로고    scopus 로고
    • MEME-ChIP: motif analysis of large DNA datasets
    • Machanick P, Bailey TL: MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics 2011, 27(12):1696-1697.
    • (2011) Bioinformatics , vol.27 , Issue.12 , pp. 1696-1697
    • Machanick, P.1    Bailey, T.L.2
  • 22
    • 84859324848 scopus 로고    scopus 로고
    • Genome-wide analysis of STAT3 binding in vivo predicts effectors of the anti-inflammatory response in macrophages
    • Hutchins AP, Poulain S, Miranda-Saavedra D: Genome-wide analysis of STAT3 binding in vivo predicts effectors of the anti-inflammatory response in macrophages. Blood 2012, 119(13):e110-e119.
    • (2012) Blood , vol.119 , Issue.13 , pp. e110-e119
    • Hutchins, A.P.1    Poulain, S.2    Miranda-Saavedra, D.3
  • 23
    • 84890858590 scopus 로고    scopus 로고
    • Twist1 is essential in maintaining mesenchymal state and tumor-initiating properties in synovial sarcoma
    • Lee KW, Lee NK, Ham S, Roh TY, Kim SH: Twist1 is essential in maintaining mesenchymal state and tumor-initiating properties in synovial sarcoma. Cancer Lett 2014, 343(1):62-73.
    • (2014) Cancer Lett , vol.343 , Issue.1 , pp. 62-73
    • Lee, K.W.1    Lee, N.K.2    Ham, S.3    Roh, T.Y.4    Kim, S.H.5
  • 24
  • 25
    • 0037214281 scopus 로고    scopus 로고
    • Novel transcriptional potentiation of BETA2/NeuroD on the secretin gene promoter by the DNA-binding protein Finb/RREB-1
    • Ray SK, Nishitani J, Petry MW, Fessing MY, Leiter AB: Novel transcriptional potentiation of BETA2/NeuroD on the secretin gene promoter by the DNA-binding protein Finb/RREB-1. Mol Cell Biol 2003, 23(1):259-271.
    • (2003) Mol Cell Biol , vol.23 , Issue.1 , pp. 259-271
    • Ray, S.K.1    Nishitani, J.2    Petry, M.W.3    Fessing, M.Y.4    Leiter, A.B.5
  • 26
    • 67849130563 scopus 로고    scopus 로고
    • ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
    • Chen J, Bardes EE, Aronow BJ, Jegga AG: ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 2009, 37(Web Server issue):W305-W311.
    • (2009) Nucleic Acids Res , vol.37 , Issue.WEB SERVER ISSUE , pp. W305-W311
    • Chen, J.1    Bardes, E.E.2    Aronow, B.J.3    Jegga, A.G.4
  • 28
    • 0034013344 scopus 로고    scopus 로고
    • Limb development: an international model for vertebrate pattern formation
    • Tickle C: Limb development: an international model for vertebrate pattern formation. Int J Dev Biol 2000, 44(1):101-108.
    • (2000) Int J Dev Biol , vol.44 , Issue.1 , pp. 101-108
    • Tickle, C.1
  • 30
    • 84878018679 scopus 로고    scopus 로고
    • RREB1 repressed miR-143/145 modulates KRAS signaling through downregulation of multiple targets
    • Kent OA, Fox-Talbot K, Halushka MK: RREB1 repressed miR-143/145 modulates KRAS signaling through downregulation of multiple targets. Oncogene 2013, 32(20):2576-2585.
    • (2013) Oncogene , vol.32 , Issue.20 , pp. 2576-2585
    • Kent, O.A.1    Fox-Talbot, K.2    Halushka, M.K.3
  • 31
    • 33746808398 scopus 로고    scopus 로고
    • Wnt/beta-catenin signaling in development and disease
    • Clevers H: Wnt/beta-catenin signaling in development and disease. Cell 2006, 127(3):469-480.
    • (2006) Cell , vol.127 , Issue.3 , pp. 469-480
    • Clevers, H.1
  • 32
    • 3543095147 scopus 로고    scopus 로고
    • Beta-catenin is required for endothelial-mesenchymal transformation during heart cushion development in the mouse
    • Liebner S, Cattelino A, Gallini R, Rudini N, Iurlaro M, Piccolo S, Dejana E: Beta-catenin is required for endothelial-mesenchymal transformation during heart cushion development in the mouse. J Cell Biol 2004, 166(3):359-367.
    • (2004) J Cell Biol , vol.166 , Issue.3 , pp. 359-367
    • Liebner, S.1    Cattelino, A.2    Gallini, R.3    Rudini, N.4    Iurlaro, M.5    Piccolo, S.6    Dejana, E.7
  • 33
    • 75049083319 scopus 로고    scopus 로고
    • Wnt signaling in heart valve development and osteogenic gene induction
    • Alfieri CM, Cheek J, Chakraborty S, Yutzey KE: Wnt signaling in heart valve development and osteogenic gene induction. Dev Biol 2010, 338(2):127-135.
    • (2010) Dev Biol , vol.338 , Issue.2 , pp. 127-135
    • Alfieri, C.M.1    Cheek, J.2    Chakraborty, S.3    Yutzey, K.E.4
  • 34
    • 84880261948 scopus 로고    scopus 로고
    • Tbx20 acts upstream of Wnt signaling to regulate endocardial cushion formation and valve remodeling during mouse cardiogenesis
    • Cai X, Zhang W, Hu J, Zhang L, Sultana N, Wu B, Cai W, Zhou B, Cai CL: Tbx20 acts upstream of Wnt signaling to regulate endocardial cushion formation and valve remodeling during mouse cardiogenesis. Development 2013, 140(15):3176-3187.
    • (2013) Development , vol.140 , Issue.15 , pp. 3176-3187
    • Cai, X.1    Zhang, W.2    Hu, J.3    Zhang, L.4    Sultana, N.5    Wu, B.6    Cai, W.7    Zhou, B.8    Cai, C.L.9
  • 37
    • 79957610561 scopus 로고    scopus 로고
    • Initiation of proximal-distal patterning in the vertebrate limb by signals and growth
    • Cooper KL, Hu JK, ten Berge D, Fernandez-Teran M, Ros MA, Tabin CJ: Initiation of proximal-distal patterning in the vertebrate limb by signals and growth. Science 2011, 332(6033):1083-1086.
    • (2011) Science , vol.332 , Issue.6033 , pp. 1083-1086
    • Cooper, K.L.1    Hu, J.K.2    ten Berge, D.3    Fernandez-Teran, M.4    Ros, M.A.5    Tabin, C.J.6
  • 38
    • 73649111713 scopus 로고    scopus 로고
    • Wnt/beta-catenin and retinoic acid receptor signaling pathways interact to regulate chondrocyte function and matrix turnover
    • Yasuhara R, Yuasa T, Williams JA, Byers SW, Shah S, Pacifici M, Iwamoto M, Enomoto-Iwamoto M: Wnt/beta-catenin and retinoic acid receptor signaling pathways interact to regulate chondrocyte function and matrix turnover. J Biol Chem 2010, 285(1):317-327.
    • (2010) J Biol Chem , vol.285 , Issue.1 , pp. 317-327
    • Yasuhara, R.1    Yuasa, T.2    Williams, J.A.3    Byers, S.W.4    Shah, S.5    Pacifici, M.6    Iwamoto, M.7    Enomoto-Iwamoto, M.8
  • 39
    • 79952724921 scopus 로고    scopus 로고
    • Wnt5b regulates mesenchymal cell aggregation and chondrocyte differentiation through the planar cell polarity pathway
    • Bradley EW, Drissi MH: Wnt5b regulates mesenchymal cell aggregation and chondrocyte differentiation through the planar cell polarity pathway. J Cell Physiol 2011, 226(6):1683-1693.
    • (2011) J Cell Physiol , vol.226 , Issue.6 , pp. 1683-1693
    • Bradley, E.W.1    Drissi, M.H.2
  • 42
    • 79951896236 scopus 로고    scopus 로고
    • Critical role of Wnt5a-Ror2 signaling in motility and invasiveness of carcinoma cells following Snail-mediated epithelial-mesenchymal transition
    • Ren D, Minami Y, Nishita M: Critical role of Wnt5a-Ror2 signaling in motility and invasiveness of carcinoma cells following Snail-mediated epithelial-mesenchymal transition. Genes Cells 2011, 16(3):304-315.
    • (2011) Genes Cells , vol.16 , Issue.3 , pp. 304-315
    • Ren, D.1    Minami, Y.2    Nishita, M.3
  • 43
    • 84856681391 scopus 로고    scopus 로고
    • Twist1 is an independent prognostic factor of esophageal squamous cell carcinoma and associated with its epithelial-mesenchymal transition
    • Lee KW, Kim JH, Han S, Sung CO, Do IG, Ko YH, Um SH, Kim SH: Twist1 is an independent prognostic factor of esophageal squamous cell carcinoma and associated with its epithelial-mesenchymal transition. Ann Surg Oncol 2012, 19(1):326-335.
    • (2012) Ann Surg Oncol , vol.19 , Issue.1 , pp. 326-335
    • Lee, K.W.1    Kim, J.H.2    Han, S.3    Sung, C.O.4    Do, I.G.5    Ko, Y.H.6    Um, S.H.7    Kim, S.H.8
  • 44
    • 33846869994 scopus 로고    scopus 로고
    • Tbx20 regulation of endocardial cushion cell proliferation and extracellular matrix gene expression
    • Shelton EL, Yutzey KE: Tbx20 regulation of endocardial cushion cell proliferation and extracellular matrix gene expression. Dev Biol 2007, 302(2):376-388.
    • (2007) Dev Biol , vol.302 , Issue.2 , pp. 376-388
    • Shelton, E.L.1    Yutzey, K.E.2
  • 46
    • 55749101777 scopus 로고    scopus 로고
    • Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis
    • Nielsen R, Pedersen TA, Hagenbeek D, Moulos P, Siersbaek R, Megens E, Denissov S, Borgesen M, Francoijs KJ, Mandrup S, Stunnenberg HG: Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. Genes Dev 2008, 22(21):2953-2967.
    • (2008) Genes Dev , vol.22 , Issue.21 , pp. 2953-2967
    • Nielsen, R.1    Pedersen, T.A.2    Hagenbeek, D.3    Moulos, P.4    Siersbaek, R.5    Megens, E.6    Denissov, S.7    Borgesen, M.8    Francoijs, K.J.9    Mandrup, S.10    Stunnenberg, H.G.11
  • 47
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25.
    • (2009) Genome Biol , vol.10 , Issue.3 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 48
    • 84874969184 scopus 로고    scopus 로고
    • PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
    • Mi H, Muruganujan A, Thomas PD: PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res 2013, 41(Database issue):D377-D386.
    • (2013) Nucleic Acids Res , vol.41 , Issue.DATABASE ISSUE , pp. D377-D386
    • Mi, H.1    Muruganujan, A.2    Thomas, P.D.3


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