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Volumn 10, Issue 3, 2015, Pages

Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS THALIANA; ARTICLE; BIOTIC STRESS; CONTROLLED STUDY; DATA ANALYSIS; GENE CONTROL; GENE EXPRESSION; GENE IDENTIFICATION; GENE ONTOLOGY; GENE REGULATORY NETWORK; HOST PATHOGEN INTERACTION; IMMUNE SYSTEM; MICROARRAY ANALYSIS; NONHUMAN; ORGANISMAL PLANT DISEASE; PLANT DEFENSE; PLANT GENE; PLANT RESPONSE; STATISTICAL ANALYSIS; ARABIDOPSIS; CLUSTER ANALYSIS; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MICROBIOLOGY; PHYSIOLOGICAL STRESS;

EID: 84923917545     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0118731     Document Type: Article
Times cited : (73)

References (80)
  • 1
    • 32944479048 scopus 로고    scopus 로고
    • Host-microbe interactions: Shaping the evolution of the plant immune response
    • PMID: 16497589
    • Chisholm ST, Coaker G, Day B, Staskawicz BJ. Host-microbe interactions: shaping the evolution of the plant immune response. Cell. 2006; 124: 803-814. PMID: 16497589
    • (2006) Cell , vol.124 , pp. 803-814
    • Chisholm, S.T.1    Coaker, G.2    Day, B.3    Staskawicz, B.J.4
  • 2
    • 77954763024 scopus 로고    scopus 로고
    • Plant immunity: Towards an integrated view of plant-pathogen interactions
    • PMID: 20585331
    • Dodds PN, Rathjen JP. Plant immunity: towards an integrated view of plant-pathogen interactions. Nat Rev Genet. 2010; 11: 539-548. doi: 10.1038/nrg2812 PMID: 20585331
    • (2010) Nat Rev Genet , vol.11 , pp. 539-548
    • Dodds, P.N.1    Rathjen, J.P.2
  • 3
    • 65349121783 scopus 로고    scopus 로고
    • Networking by small-molecule hormones in plant immunity
    • PMID: 19377457
    • Pieterse CM, Leon-Reyes A, Van der Ent S, Van Wees SC. Networking by small-molecule hormones in plant immunity. Nat Chem Biol. 2009; 5: 308-316. doi: 10.1038/nchembio.164 PMID: 19377457
    • (2009) Nat Chem Biol , vol.5 , pp. 308-316
    • Pieterse, C.M.1    Leon-Reyes, A.2    Van Der Ent, S.3    Van Wees, S.C.4
  • 4
    • 44649141242 scopus 로고    scopus 로고
    • Making sense of hormone crosstalk during plant immune responses
    • PMID: 18541211
    • Spoel SH, Dong X. Making sense of hormone crosstalk during plant immune responses. Cell Host Microbe. 2008; 3: 348-351. doi: 10.1016/j.chom.2008.05.009 PMID: 18541211
    • (2008) Cell Host Microbe , vol.3 , pp. 348-351
    • Spoel, S.H.1    Dong, X.2
  • 5
    • 77952530584 scopus 로고    scopus 로고
    • The language of calcium signaling
    • PMID: 20192754
    • Dodd AN, Kudla J, Sanders D. The language of calcium signaling. Annu Rev Plant Biol. 2010; 61: 593-620. doi: 10.1146/annurev-arplant-070109-104628 PMID: 20192754
    • (2010) Annu Rev Plant Biol , vol.61 , pp. 593-620
    • Dodd, A.N.1    Kudla, J.2    Sanders, D.3
  • 6
    • 84885202290 scopus 로고    scopus 로고
    • Calcium-dependent protein kinases: Hubs in plant stress signaling and development
    • PMID: 24014579
    • Schulz P, Herde M, Romeis T. Calcium-dependent protein kinases: hubs in plant stress signaling and development. Plant Physiol 2013; 163: 523-530. doi: 10.1104/pp.113.222539 PMID: 24014579
    • (2013) Plant Physiol , vol.163 , pp. 523-530
    • Schulz, P.1    Herde, M.2    Romeis, T.3
  • 7
    • 33745662410 scopus 로고    scopus 로고
    • Reactive oxygen species signaling in response to pathogens
    • PMID: 16760490
    • Torres MA, Jones JD, Dangl JL. Reactive oxygen species signaling in response to pathogens. Plant Physiol 2006; 141: 373-378. PMID: 16760490
    • (2006) Plant Physiol , vol.141 , pp. 373-378
    • Torres, M.A.1    Jones, J.D.2    Dangl, J.L.3
  • 8
    • 0037186599 scopus 로고    scopus 로고
    • MAP kinase signalling cascade in Arabidopsis innate immunity
    • PMID: 11875555
    • Asai T, Tena G, Plotnikova J, Willmann MR, Chiu WL, Gomez-Gomez L, et al. MAP kinase signalling cascade in Arabidopsis innate immunity. Nature. 2002; 415: 977-983. PMID: 11875555
    • (2002) Nature , vol.415 , pp. 977-983
    • Asai, T.1    Tena, G.2    Plotnikova, J.3    Willmann, M.R.4    Chiu, W.L.5    Gomez-Gomez, L.6
  • 9
    • 0037324536 scopus 로고    scopus 로고
    • Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae
    • PMID: 12566575
    • Tao Y, Xie Z, Chen W, Glazebrook J, Chang HS, Han B, et al. Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell. 2003; 15: 317-330. PMID: 12566575
    • (2003) Plant Cell , vol.15 , pp. 317-330
    • Tao, Y.1    Xie, Z.2    Chen, W.3    Glazebrook, J.4    Chang, H.S.5    Han, B.6
  • 10
    • 33645514995 scopus 로고    scopus 로고
    • Transcriptome analysis of the barley-Fusarium graminearum interaction
    • PMID: 16610744
    • Boddu J, Cho S, Kruger WM, Muehlbauer GJ. Transcriptome analysis of the barley-Fusarium graminearum interaction. Mol Plant Microbe Interact. 2006; 19: 407-417. PMID: 16610744
    • (2006) Mol Plant Microbe Interact , vol.19 , pp. 407-417
    • Boddu, J.1    Cho, S.2    Kruger, W.M.3    Muehlbauer, G.J.4
  • 12
    • 41449085571 scopus 로고    scopus 로고
    • Eigengene networks for studying the relationships between co-expression modules
    • PMID: 18031580
    • Langfelder P, Horvath S. Eigengene networks for studying the relationships between co-expression modules. BMC Syst Biol. 2007; 1: 54. PMID: 18031580
    • (2007) BMC Syst Biol , vol.1 , pp. 54
    • Langfelder, P.1    Horvath, S.2
  • 13
    • 35948931439 scopus 로고    scopus 로고
    • An Arabidopsis gene network based on the graphical Gaussian model
    • PMID: 17921353
    • Ma S, Gong Q, Bohnert HJ. An Arabidopsis gene network based on the graphical Gaussian model. Genome Res. 2007; 17: 1614-1625. PMID: 17921353
    • (2007) Genome Res , vol.17 , pp. 1614-1625
    • Ma, S.1    Gong, Q.2    Bohnert, H.J.3
  • 14
    • 84899673310 scopus 로고    scopus 로고
    • Systematic identification of cell-wall related genes in Populus based on analysis of functional modules in co-expression network
    • Cai B, Li CH, Huang J. Systematic identification of cell-wall related genes in Populus based on analysis of functional modules in co-expression network. PLoS One. 2014; 9: e95176. doi: 10.1371/journal. pone.0095176 PMID: 24736620
    • (2014) PLoS One
    • Cai, B.1    Li, C.H.2    Huang, J.3
  • 15
    • 84867016547 scopus 로고    scopus 로고
    • GeneFriends: An online coexpression analysis tool to identify novel gene targets for aging and complex diseases
    • PMID: 23039964
    • van Dam S, Cordeiro R, Craig T, van Dam J, Wood SH, de Magalhães JP. GeneFriends: an online coexpression analysis tool to identify novel gene targets for aging and complex diseases. BMC Genomics. 2012; 13: 535. doi: 10.1186/1471-2164-13-535 PMID: 23039964
    • (2012) BMC Genomics , vol.13 , pp. 535
    • Van Dam, S.1    Cordeiro, R.2    Craig, T.3    Van Dam, J.4    Wood, S.H.5    De Magalhães, J.P.6
  • 16
    • 84902550626 scopus 로고    scopus 로고
    • Expression-based network biology identifies immune-related functional modules involved in plant defense
    • PMID: 24888606
    • Tully JP, Hill AE, Ahmed HM, Whitley R, Skjellum A, Mukhtar MS. Expression-based network biology identifies immune-related functional modules involved in plant defense. BMC Genomics. 2014; 15: 421. doi: 10.1186/1471-2164-15-421 PMID: 24888606
    • (2014) BMC Genomics , vol.15 , pp. 421
    • Tully, J.P.1    Hill, A.E.2    Ahmed, H.M.3    Whitley, R.4    Skjellum, A.5    Mukhtar, M.S.6
  • 17
    • 33845231723 scopus 로고    scopus 로고
    • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    • PMID: 17101986
    • Oldham MC, Horvath S, Geschwind DH. Conservation and evolution of gene coexpression networks in human and chimpanzee brains. Proc Natl Acad Sci U S A. 2006; 103: 17973-17978. PMID: 17101986
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 17973-17978
    • Oldham, M.C.1    Horvath, S.2    Geschwind, D.H.3
  • 19
    • 0038104857 scopus 로고    scopus 로고
    • Genomic gene clustering analysis of pathways in eukaryotes
    • PMID: 12695325
    • Lee JM, Sonnhammer EL. Genomic gene clustering analysis of pathways in eukaryotes. Genome Res. 2003; 13: 875-882. PMID: 12695325
    • (2003) Genome Res , vol.13 , pp. 875-882
    • Lee, J.M.1    Sonnhammer, E.L.2
  • 20
    • 6344241652 scopus 로고    scopus 로고
    • Conservation and coevolution in the scale-free human gene coexpression network
    • PMID: 15282333
    • Jordan IK, Marino-Ramirez L, Wolf YI, Koonin EV. Conservation and coevolution in the scale-free human gene coexpression network. Mol Biol Evol. 2004; 21: 2058-2070. PMID: 15282333
    • (2004) Mol Biol Evol , vol.21 , pp. 2058-2070
    • Jordan, I.K.1    Marino-Ramirez, L.2    Wolf, Y.I.3    Koonin, E.V.4
  • 21
    • 76349125292 scopus 로고    scopus 로고
    • Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
    • PMID: 20118918
    • Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol. 2010; 28: 149- 156. doi: 10.1038/ nbt.1603 PMID: 20118918
    • (2010) Nat Biotechnol , vol.28 , pp. 149-156
    • Lee, I.1    Ambaru, B.2    Thakkar, P.3    Marcotte, E.M.4    Rhee, S.Y.5
  • 22
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • PMID: 14735121
    • Barabasi A-L, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet. 2004; 5: 101-113. PMID: 14735121
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.-L.1    Oltvai, Z.N.2
  • 23
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance of complex networks
    • PMID: 10935628
    • Albert R, Jeong H, Barabasi AL. Error and attack tolerance of complex networks. Nature. 2000; 406: 378-382. PMID: 10935628
    • (2000) Nature , vol.406 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabasi, A.L.3
  • 24
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • PMID: 11333967
    • Jeong H, Mason SP, Barabasi AL, Oltvai ZN. Lethality and centrality in protein networks. Nature. 2001; 411: 41-42. PMID: 11333967
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabasi, A.L.3    Oltvai, Z.N.4
  • 25
    • 54949156075 scopus 로고    scopus 로고
    • Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks
    • PMID: 18784117
    • Reverter A, Chan EK. Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks. Bioinformatics. 2008; 24: 2491-2497. doi: 10.1093/ bioinformatics/btn482 PMID: 18784117
    • (2008) Bioinformatics , vol.24 , pp. 2491-2497
    • Reverter, A.1    Chan, E.K.2
  • 26
    • 33645221650 scopus 로고    scopus 로고
    • Gene connectivity, function, and sequence conservation: Predictions from modular yeast co-expression networks
    • PMID: 16515682
    • Carlson MR, Zhang B, Fang Z, Mischel PS, Horvath S, Nelson SF. Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks. BMC Genomics. 2006; 7: 40. PMID: 16515682
    • (2006) BMC Genomics , vol.7 , pp. 40
    • Carlson, M.R.1    Zhang, B.2    Fang, Z.3    Mischel, P.S.4    Horvath, S.5    Nelson, S.F.6
  • 27
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • PMID: 19114008
    • Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. 2008; 9: 559. doi: 10.1186/1471-2105-9-559 PMID: 19114008
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 28
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol. 2005; 4: 1544-6115.
    • (2005) Stat Appl Genet Mol Biol , vol.4 , pp. 1544-6115
    • Zhang, B.1    Horvath, S.2
  • 29
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • PMID: 21149340
    • Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics. 2011; 27: 431-432. doi: 10.1093/bioinformatics/btq675 PMID: 21149340
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.L.4    Ideker, T.5
  • 30
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    • PMID: 16606683
    • Alexa A, Rahnenfuhrer J, Lengauer T. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics. 2006; 22: 1600-1607. PMID: 16606683
    • (2006) Bioinformatics , vol.22 , pp. 1600-1607
    • Alexa, A.1    Rahnenfuhrer, J.2    Lengauer, T.3
  • 31
    • 77956431323 scopus 로고    scopus 로고
    • Biotic stress globally downregulates photosynthesis genes
    • PMID: 20444224
    • Bilgin DD, Zavala JA, Zhu J, Clough SJ, Ort DR, DeLucia EH. Biotic stress globally downregulates photosynthesis genes. Plant Cell Environ. 2010; 33: 1597-1613. doi: 10.1111/j.1365-3040.2010.02167.x PMID: 20444224
    • (2010) Plant Cell Environ , vol.33 , pp. 1597-1613
    • Bilgin, D.D.1    Zavala, J.A.2    Zhu, J.3    Clough, S.J.4    Ort, D.R.5    DeLucia, E.H.6
  • 32
    • 66149126624 scopus 로고    scopus 로고
    • Primary metabolism and plant defense-fuel for the fire
    • PMID: 19348567
    • Bolton MD. Primary metabolism and plant defense-fuel for the fire. Mol Plant Microbe Interact 2009; 22: 487-497. doi: 10.1094/MPMI-22-5-0487 PMID: 19348567
    • (2009) Mol Plant Microbe Interact , vol.22 , pp. 487-497
    • Bolton, M.D.1
  • 33
    • 84855351158 scopus 로고    scopus 로고
    • Plant responses to insect herbivory: Interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways
    • PMID: 21752032
    • Kerchev PI, Fenton B, Foyer CH, Hancock RD. Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways. Plant Cell Environ. 2012; 35: 441-453. doi: 10.1111/j.1365-3040.2011.02399.x PMID: 21752032
    • (2012) Plant Cell Environ , vol.35 , pp. 441-453
    • Kerchev, P.I.1    Fenton, B.2    Foyer, C.H.3    Hancock, R.D.4
  • 34
    • 77952240149 scopus 로고    scopus 로고
    • Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection
    • PMID: 20012201
    • Major IT, Nicole MC, Duplessis S, Seguin A. Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection. Photosynth Res. 2010; 104: 41-48. doi: 10.1007/s11120-009-9507-2 PMID: 20012201
    • (2010) Photosynth Res , vol.104 , pp. 41-48
    • Major, I.T.1    Nicole, M.C.2    Duplessis, S.3    Seguin, A.4
  • 35
    • 33646684714 scopus 로고    scopus 로고
    • Seduced by the dark side: Integrating molecular and ecological perspectives on the influence of light on plant defence against pests and pathogens
    • PMID: 16684231
    • Roberts MR, Paul ND. Seduced by the dark side: integrating molecular and ecological perspectives on the influence of light on plant defence against pests and pathogens. New Phytol. 2006; 170: 677-699. PMID: 16684231
    • (2006) New Phytol , vol.170 , pp. 677-699
    • Roberts, M.R.1    Paul, N.D.2
  • 36
    • 84863229536 scopus 로고    scopus 로고
    • Photosynthesis, photorespiration, and light signalling in defence responses
    • PMID: 22282535
    • Kangasjarvi S, Neukermans J, Li S, Aro EM, Noctor G. Photosynthesis, photorespiration, and light signalling in defence responses. J Exp Bot. 2012; 63: 1619-1636. doi: 10.1093/jxb/err402 PMID: 22282535
    • (2012) J Exp Bot , vol.63 , pp. 1619-1636
    • Kangasjarvi, S.1    Neukermans, J.2    Li, S.3    Aro, E.M.4    Noctor, G.5
  • 37
    • 78651270438 scopus 로고    scopus 로고
    • AHD2.0: An update version of Arabidopsis Hormone Database for plant systematic studies
    • PMID: 21045062
    • Jiang Z, Liu X, Peng Z, Wan Y, Ji Y, He W, et al. AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies. Nucleic Acids Res. 2011; 39: D1123-1129. doi: 10.1093/nar/ gkq1066 PMID: 21045062
    • (2011) Nucleic Acids Res , vol.39 , pp. D1123-D1129
    • Jiang, Z.1    Liu, X.2    Peng, Z.3    Wan, Y.4    Ji, Y.5    He, W.6
  • 38
    • 60449092387 scopus 로고    scopus 로고
    • Role of plant hormones in plant defence responses
    • PMID: 19083153
    • Bari R, Jones JD. Role of plant hormones in plant defence responses. Plant Mol Biol. 2009; 69: 473-488. doi: 10.1007/s11103-008-9435-0 PMID: 19083153
    • (2009) Plant Mol Biol , vol.69 , pp. 473-488
    • Bari, R.1    Jones, J.D.2
  • 40
    • 84923885804 scopus 로고    scopus 로고
    • Affymetrix Arabidopsis ATH1 Genome Array annotation data (chip ath1121501)
    • Carlson MR Affymetrix Arabidopsis ATH1 Genome Array annotation data (chip ath1121501). R package version 2.7.0. 2012. Available: www.bioconductor.org
    • (2012) R Package Version 2.7.0
    • Carlson, M.R.1
  • 41
    • 0027490930 scopus 로고
    • Plant 'pathogenesis-related' proteins and their role in defense against pathogens
    • PMID: 8286442
    • Stintzi A, Heitz T, Prasad V, Wiedemann-Merdinoglu S, Kauffmann S, Geoffroy P, et al. Plant 'pathogenesis-related' proteins and their role in defense against pathogens. Biochimie. 1993; 75: 687-706. PMID: 8286442
    • (1993) Biochimie , vol.75 , pp. 687-706
    • Stintzi, A.1    Heitz, T.2    Prasad, V.3    Wiedemann-Merdinoglu, S.4    Kauffmann, S.5    Geoffroy, P.6
  • 42
    • 33748941620 scopus 로고    scopus 로고
    • Significance of inducible defense-related proteins in infected plants
    • PMID: 16602946
    • van Loon LC, Rep M, Pieterse CM. Significance of inducible defense-related proteins in infected plants. Annu Rev Phytopathol. 2006; 44: 135-162. PMID: 16602946
    • (2006) Annu Rev Phytopathol , vol.44 , pp. 135-162
    • Van Loon, L.C.1    Rep, M.2    Pieterse, C.M.3
  • 43
    • 0036779396 scopus 로고    scopus 로고
    • Transcription factors in plant defense and stress responses
    • PMID: 12183182
    • Singh K, Foley RC, Onate-Sanchez L. Transcription factors in plant defense and stress responses. Curr Opin Plant Biol. 2002; 5: 430-436. PMID: 12183182
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 430-436
    • Singh, K.1    Foley, R.C.2    Onate-Sanchez, L.3
  • 44
    • 22344449669 scopus 로고    scopus 로고
    • Constructing transcriptional regulatory networks
    • PMID: 15998805
    • Blais A, Dynlacht BD. Constructing transcriptional regulatory networks. Genes Dev. 2005; 19: 1499-1511. PMID: 15998805
    • (2005) Genes Dev , vol.19 , pp. 1499-1511
    • Blais, A.1    Dynlacht, B.D.2
  • 45
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • PMID: 12399584
    • Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science. 2002; 298: 799-804. PMID: 12399584
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.I.1    Rinaldi, N.J.2    Robert, F.3    Odom, D.T.4    Bar-Joseph, Z.5    Gerber, G.K.6
  • 46
    • 84887309099 scopus 로고    scopus 로고
    • Incorporating motif analysis into gene coexpression networks reveals novel modular expression pattern and new signaling pathways
    • PMID: 24098147
    • Ma S, Shah S, Bohnert HJ, Snyder M, Dinesh-Kumar SP. Incorporating motif analysis into gene coexpression networks reveals novel modular expression pattern and new signaling pathways. PLoS Genet. 2013; 9: e1003840. doi: 10.1371/journal.pgen.1003840 PMID: 24098147
    • (2013) PLoS Genet , vol.9
    • Ma, S.1    Shah, S.2    Bohnert, H.J.3    Snyder, M.4    Dinesh-Kumar, S.P.5
  • 47
    • 0347492019 scopus 로고    scopus 로고
    • AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors
    • PMID: 12820902
    • Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, et al. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics. 2003; 4: 25. PMID: 12820902
    • (2003) BMC Bioinformatics , vol.4 , pp. 25
    • Davuluri, R.V.1    Sun, H.2    Palaniswamy, S.K.3    Matthews, N.4    Molina, C.5    Kurtz, M.6
  • 48
    • 78651339097 scopus 로고    scopus 로고
    • AGRIS: The Arabidopsis Gene Regulatory Information Server, an update
    • PMID: 21059685
    • Yilmaz A, Mejia-Guerra MK, Kurz K, Liang X, Welch L, Grotewold E. AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. Nucleic Acids Res. 2011; 39: D1118-1122. doi: 10.1093/ nar/gkq1120 PMID: 21059685
    • (2011) Nucleic Acids Res , vol.39 , pp. D1118-D1122
    • Yilmaz, A.1    Mejia-Guerra, M.K.2    Kurz, K.3    Liang, X.4    Welch, L.5    Grotewold, E.6
  • 49
    • 0034031131 scopus 로고    scopus 로고
    • Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression
    • PMID: 10715325
    • Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell. 2000; 12: 393-404. PMID: 10715325
    • (2000) Plant Cell , vol.12 , pp. 393-404
    • Fujimoto, S.Y.1    Ohta, M.2    Usui, A.3    Shinshi, H.4    Ohme-Takagi, M.5
  • 50
    • 0029278116 scopus 로고
    • GCC element and a G-box motif participate in ethylene-induced expression of the PRB-1b gene
    • PMID: 7787179
    • Sessa G, Meller Y, Fluhr R. A GCC element and a G-box motif participate in ethylene-induced expression of the PRB-1b gene. Plant Mol Biol. 1995; 28: 145-153. PMID: 7787179
    • (1995) Plant Mol Biol , vol.28 , pp. 145-153
    • Sessa, G.1    Meller, Y.2    Fluhr, R.A.3
  • 51
    • 0033200227 scopus 로고    scopus 로고
    • Early nuclear events in plant defence signalling: Rapid gene activation by WRKY transcription factors
    • PMID: 10469648
    • Eulgem T, Rushton PJ, Schmelzer E, Hahlbrock K, Somssich IE. Early nuclear events in plant defence signalling: rapid gene activation by WRKY transcription factors. EMBO J. 1999; 18: 4689-4699. PMID: 10469648
    • (1999) EMBO J , vol.18 , pp. 4689-4699
    • Eulgem, T.1    Rushton, P.J.2    Schmelzer, E.3    Hahlbrock, K.4    Somssich, I.E.5
  • 52
    • 0034486764 scopus 로고    scopus 로고
    • Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis
    • PMID: 11135117
    • Du L, Chen Z. Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis. Plant J 2000; 24: 837-847. PMID: 11135117
    • (2000) Plant J , vol.24 , pp. 837-847
    • Du, L.1    Chen, Z.2
  • 53
    • 0034914973 scopus 로고    scopus 로고
    • Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression
    • PMID: 11449049
    • Yu D, Chen C, Chen Z. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 2001; 13: 1527-1540. PMID: 11449049
    • (2001) Plant Cell , vol.13 , pp. 1527-1540
    • Yu, D.1    Chen, C.2    Chen, Z.3
  • 54
    • 68249143317 scopus 로고    scopus 로고
    • The role of WRKY transcription factors in plant immunity
    • PMID: 19420325
    • Pandey SP, Somssich IE. The role of WRKY transcription factors in plant immunity. Plant Physiol 2009; 150: 1648-1655. doi: 10.1104/pp.109.138990 PMID: 19420325
    • (2009) Plant Physiol , vol.150 , pp. 1648-1655
    • Pandey, S.P.1    Somssich, I.E.2
  • 55
    • 0036010572 scopus 로고    scopus 로고
    • Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses
    • PMID: 11910004
    • Chen W, Provart NJ, Glazebrook J, Katagiri F, Chang HS, Eulgem T, et al. Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell. 2002; 14: 559-574. PMID: 11910004
    • (2002) Plant Cell , vol.14 , pp. 559-574
    • Chen, W.1    Provart, N.J.2    Glazebrook, J.3    Katagiri, F.4    Chang, H.S.5    Eulgem, T.6
  • 56
    • 0033662422 scopus 로고    scopus 로고
    • The transcriptome of Arabidopsis thaliana during systemic acquired resistance
    • PMID: 11101835
    • Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, Lawton KA, et al. The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nat Genet. 2000; 26: 403-410. PMID: 11101835
    • (2000) Nat Genet , vol.26 , pp. 403-410
    • Maleck, K.1    Levine, A.2    Eulgem, T.3    Morgan, A.4    Schmid, J.5    Lawton, K.A.6
  • 57
    • 34547219390 scopus 로고    scopus 로고
    • Networks of WRKY transcription factors in defense signaling
    • PMID: 17644023
    • Eulgem T, Somssich IE. Networks of WRKY transcription factors in defense signaling. Curr Opin Plant Biol. 2007; 10: 366-371. PMID: 17644023
    • (2007) Curr Opin Plant Biol , vol.10 , pp. 366-371
    • Eulgem, T.1    Somssich, I.E.2
  • 58
    • 0034028259 scopus 로고    scopus 로고
    • Molecular responses to dehydration and low temperature: Differences and cross-talk between two stress signaling pathways
    • PMID: 10837265
    • Shinozaki K, Yamaguchi-Shinozaki K. Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Curr Opin Plant Biol. 2000; 3: 217-223. PMID: 10837265
    • (2000) Curr Opin Plant Biol , vol.3 , pp. 217-223
    • Shinozaki, K.1    Yamaguchi-Shinozaki, K.2
  • 59
    • 79955446914 scopus 로고    scopus 로고
    • The LSD1-interacting protein GILP is a LITAF domain protein that negatively regulates hypersensitive cell death in Arabidopsis
    • PMID: 21526181
    • He S, Tan G, Liu Q, Huang K, Ren J, Zhang X, et al. The LSD1-interacting protein GILP is a LITAF domain protein that negatively regulates hypersensitive cell death in Arabidopsis. PLoS One. 2011; 6: e18750. doi: 10.1371/journal.pone.0018750 PMID: 21526181
    • (2011) PLoS One , vol.6
    • He, S.1    Tan, G.2    Liu, Q.3    Huang, K.4    Ren, J.5    Zhang, X.6
  • 60
    • 5644263720 scopus 로고    scopus 로고
    • Calcium/calmodulin up-regulates a cytoplasmic receptor-like kinase in plants
    • PMID: 15292241
    • Yang T, Chaudhuri S, Yang L, Chen Y, Poovaiah BW. Calcium/calmodulin up-regulates a cytoplasmic receptor-like kinase in plants. J Biol Chem. 2004; 279: 42552-42559. PMID: 15292241
    • (2004) J Biol Chem , vol.279 , pp. 42552-42559
    • Yang, T.1    Chaudhuri, S.2    Yang, L.3    Chen, Y.4    Poovaiah, B.W.5
  • 61
    • 84881435452 scopus 로고    scopus 로고
    • Impacts of resistance gene genetics, function, and evolution on a durable future
    • PMID: 23682913
    • Michelmore RW, Christopoulou M, Caldwell KS. Impacts of resistance gene genetics, function, and evolution on a durable future. Annu Rev Phytopathol. 2013; 51: 291-319. doi: 10.1146/annurev-phyto-082712-102334 PMID: 23682913
    • (2013) Annu Rev Phytopathol , vol.51 , pp. 291-319
    • Michelmore, R.W.1    Christopoulou, M.2    Caldwell, K.S.3
  • 62
    • 3042530074 scopus 로고    scopus 로고
    • The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis
    • PMID: 15181213
    • Navarro L, Zipfel C, Rowland O, Keller I, Robatzek S, Boller T, et al. The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis. Plant Physiol. 2004; 135: 1113-1128. PMID: 15181213
    • (2004) Plant Physiol , vol.135 , pp. 1113-1128
    • Navarro, L.1    Zipfel, C.2    Rowland, O.3    Keller, I.4    Robatzek, S.5    Boller, T.6
  • 63
    • 20844438693 scopus 로고    scopus 로고
    • The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis
    • PMID: 15282545
    • Hass C, Lohrmann J, Albrecht V, Sweere U, Hummel F, Yoo SD, et al. The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis. EMBO J. 2004; 23: 3290-3302. PMID: 15282545
    • (2004) EMBO J , vol.23 , pp. 3290-3302
    • Hass, C.1    Lohrmann, J.2    Albrecht, V.3    Sweere, U.4    Hummel, F.5    Yoo, S.D.6
  • 64
    • 55549130497 scopus 로고    scopus 로고
    • Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection
    • PMID: 18650403
    • Ascencio-Ibanez JT, Sozzani R, Lee TJ, Chu TM, Wolfinger RD, Cella R, et al. Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol. 2008; 148: 436-454. doi: 10.1104/pp.108.121038 PMID: 18650403
    • (2008) Plant Physiol , vol.148 , pp. 436-454
    • Ascencio-Ibanez, J.T.1    Sozzani, R.2    Lee, T.J.3    Chu, T.M.4    Wolfinger, R.D.5    Cella, R.6
  • 65
    • 84879512151 scopus 로고    scopus 로고
    • An extracellular subtilase switch for immune priming in Arabidopsis
    • PMID: 23818851
    • Ramirez V, Lopez A, Mauch-Mani B, Gil MJ, Vera P. An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog. 2013; 9: e1003445. doi: 10.1371/journal.ppat.1003445 PMID: 23818851
    • (2013) PLoS Pathog , vol.9
    • Ramirez, V.1    Lopez, A.2    Mauch-Mani, B.3    Gil, M.J.4    Vera, P.5
  • 66
    • 10744220275 scopus 로고    scopus 로고
    • OXI1 kinase is necessary for oxidative burst-mediated signalling in Arabidopsis
    • PMID: 14985766
    • RentelMC, Lecourieux D, Ouaked F, Usher SL, Petersen L, Okamoto H, et al. OXI1 kinase is necessary for oxidative burst-mediated signalling in Arabidopsis. Nature. 2004; 427: 858-861. PMID: 14985766
    • (2004) Nature , vol.427 , pp. 858-861
    • Rentel, M.C.1    Lecourieux, D.2    Ouaked, F.3    Usher, S.L.4    Petersen, L.5    Okamoto, H.6
  • 67
    • 84855170846 scopus 로고    scopus 로고
    • The Arabidopsis glucosyltransferase UGT76B1 conjugates isoleucic acid and modulates plant defense and senescence
    • PMID: 22080599
    • von Saint Paul V, Zhang W, Kanawati B, Geist B, Faus-Kessler T, Schmitt-Kopplin P, et al. The Arabidopsis glucosyltransferase UGT76B1 conjugates isoleucic acid and modulates plant defense and senescence. Plant Cell. 2011; 23: 4124-4145. doi: 10.1105/tpc.111.088443 PMID: 22080599
    • (2011) Plant Cell , vol.23 , pp. 4124-4145
    • Von Saint Paul, V.1    Zhang, W.2    Kanawati, B.3    Geist, B.4    Faus-Kessler, T.5    Schmitt-Kopplin, P.6
  • 69
    • 33750571152 scopus 로고    scopus 로고
    • A mutation in an Arabidopsis ribose 5-phosphate isomerase reduces cellulose synthesis and is rescued by exogenous uridine
    • PMID: 17059404
    • Howles PA, Birch RJ, Collings DA, Gebbie LK, Hurley UA, Hocart CH, et al. A mutation in an Arabidopsis ribose 5-phosphate isomerase reduces cellulose synthesis and is rescued by exogenous uridine. Plant J. 2006; 48: 606-618. PMID: 17059404
    • (2006) Plant J , vol.48 , pp. 606-618
    • Howles, P.A.1    Birch, R.J.2    Collings, D.A.3    Gebbie, L.K.4    Hurley, U.A.5    Hocart, C.H.6
  • 70
    • 84884194972 scopus 로고    scopus 로고
    • Overexpression of AtWRKY28 and AtWRKY75 in Arabidopsis enhances resistance to oxalic acid and Sclerotinia sclerotiorum
    • PMID: 23749099
    • Chen X, Liu J, Lin G, Wang A, Wang Z, Lu G. Overexpression of AtWRKY28 and AtWRKY75 in Arabidopsis enhances resistance to oxalic acid and Sclerotinia sclerotiorum. Plant Cell Rep. 2013; 32: 1589-1599. doi: 10.1007/s00299-013-1469-3 PMID: 23749099
    • (2013) Plant Cell Rep , vol.32 , pp. 1589-1599
    • Chen, X.1    Liu, J.2    Lin, G.3    Wang, A.4    Wang, Z.5    Lu, G.6
  • 71
    • 70349115711 scopus 로고    scopus 로고
    • Evidence for a positive regulatory role of strawberry (Fragaria x ananassa) Fa WRKY1 and Arabidopsis At WRKY75 proteins in resistance
    • PMID: 19470657
    • Encinas-Villarejo S, Maldonado AM, Amil-Ruiz F, de los Santos B, Romero F, Pliego-Alfaro F, et al. Evidence for a positive regulatory role of strawberry (Fragaria x ananassa) Fa WRKY1 and Arabidopsis At WRKY75 proteins in resistance. J Exp Bot. 2009; 60: 3043-3065. doi: 10.1093/jxb/erp152 PMID: 19470657
    • (2009) J Exp Bot , vol.60 , pp. 3043-3065
    • Encinas-Villarejo, S.1    Maldonado, A.M.2    Amil-Ruiz, F.3    De Los Santos, B.4    Romero, F.5    Pliego-Alfaro, F.6
  • 72
    • 34447130395 scopus 로고    scopus 로고
    • Developmental and stimulus-induced expression patterns of Arabidopsis calmodulin-like genes CML37, CML38 and CML39
    • PMID: 17579812
    • Vanderbeld B, Snedden WA. Developmental and stimulus-induced expression patterns of Arabidopsis calmodulin-like genes CML37, CML38 and CML39. Plant Mol Biol. 2007; 64: 683-697. PMID: 17579812
    • (2007) Plant Mol Biol , vol.64 , pp. 683-697
    • Vanderbeld, B.1    Snedden, W.A.2
  • 73
    • 58249085821 scopus 로고    scopus 로고
    • Transgenic expression of MYB15 confers enhanced sensitivity to abscisic acid and improved drought tolerance in Arabidopsis thaliana
    • PMID: 19161942
    • Ding Z, Li S, An X, Liu X, Qin H, Wang D. Transgenic expression of MYB15 confers enhanced sensitivity to abscisic acid and improved drought tolerance in Arabidopsis thaliana. J Genet Genomics. 2009; 36: 17-29. doi: 10.1016/S1673-8527(09)60003-5 PMID: 19161942
    • (2009) J Genet Genomics , vol.36 , pp. 17-29
    • Ding, Z.1    Li, S.2    An, X.3    Liu, X.4    Qin, H.5    Wang, D.6
  • 74
  • 76
    • 33644872577 scopus 로고    scopus 로고
    • Limma: Linear models for microarray data
    • Gentleman RR., Carey VJ, Huber W, Irizarry RA, Dudoit S, editors New York: Springer
    • Smyth GK. Limma: linear models for microarray data. In: Gentleman RR., Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions using R and Bioconductor. New York: Springer; 2005. pp. 397-420.
    • (2005) Bioinformatics and Computational Biology Solutions Using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 77
    • 84859326067 scopus 로고    scopus 로고
    • Functions for Robust Correlations and Hierarchical Clustering
    • PMID: 23050260
    • Langfelder P, Horvath S. Fast R Functions for Robust Correlations and Hierarchical Clustering. J Stat Softw. 2012; 46: 11. PMID: 23050260
    • (2012) J Stat Softw , vol.46 , pp. 11
    • Langfelder, P.1    Horvath, S.2    Fast, R.3
  • 78
    • 40049099114 scopus 로고    scopus 로고
    • Defining clusters from a hierarchical cluster tree: The Dynamic Tree Cut package for R
    • PMID: 18024473
    • Langfelder P, Zhang B, Horvath S. Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics. 2008; 24: 719-720. PMID: 18024473
    • (2008) Bioinformatics , vol.24 , pp. 719-720
    • Langfelder, P.1    Zhang, B.2    Horvath, S.3
  • 80
    • 84891810676 scopus 로고    scopus 로고
    • PlantTFDB 3.0: A portal for the functional and evolutionary study of plant transcription factors
    • PMID: 24174544
    • Jin J, Zhang H, Kong L, Gao G, Luo J. PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Res. 2014; 42: D1182-1187. doi: 10.1093/nar/gkt1016 PMID: 24174544
    • (2014) Nucleic Acids Res , vol.42 , pp. D1182-D1187
    • Jin, J.1    Zhang, H.2    Kong, L.3    Gao, G.4    Luo, J.5


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