Comparative whole genome sequencing of community-associated methicillin-resistant Staphylococcus aureus sequence type 8 from primary care clinics in a Texas community

Pharmacotherapy

Volumn 35, Issue 2, 2015, Pages 220-228

  Lee, Grace C ^a,b   Long, S Wesley ^c   Musser, James M ^c   Beres, Stephen B ^c   Olsen, Randall J ^c   Dallas, Steven D ^b   Nunez, Yury O ^a,b   Frei, Christopher R ^a,b  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b UNIVERSITY OF TEXAS HEALTH SCIENCE CENTER AT SAN ANTONIO   (United States)

^c HOUSTON METHODIST HOSPITAL   (United States)

Author keywords

antimicrobial resistance; phylogeny; Staphylococcus aureus; whole genome sequencing

Indexed keywords

RNA POLYMERASE BETA SUBUNIT; ANTIINFECTIVE AGENT;

ADULT; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; CHILD; CLINICAL ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; FEMALE; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; HUMAN; MALE; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS INFECTION; MIDDLE AGED; NONHUMAN; PHYLOGENY; PILOT STUDY; PREDICTION; PRIMARY MEDICAL CARE; REVIEW; RPOB GENE; SCHOOL CHILD; SINGLE NUCLEOTIDE POLYMORPHISM; UNITED STATES; YOUNG ADULT; CLINICAL TRIAL; COMMUNITY-ACQUIRED INFECTIONS; DRUG EFFECTS; GENETICS; ISOLATION AND PURIFICATION; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; MULTICENTER STUDY; PRIMARY HEALTH CARE; STAPHYLOCOCCAL SKIN INFECTIONS; TEXAS;

ADULT; ANTI-BACTERIAL AGENTS; CHILD; COMMUNITY-ACQUIRED INFECTIONS; DRUG RESISTANCE, BACTERIAL; FEMALE; GENOME, BACTERIAL; GENOTYPE; HUMANS; MALE; METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS; MICROBIAL SENSITIVITY TESTS; MIDDLE AGED; PILOT PROJECTS; POLYMORPHISM, SINGLE NUCLEOTIDE; PRIMARY HEALTH CARE; STAPHYLOCOCCAL SKIN INFECTIONS; TEXAS; YOUNG ADULT;

EID: 84923430176     PISSN: 02770008     EISSN: 18759114     Source Type: Journal    
DOI: 10.1002/phar.1536     Document Type: Review

References (23)

1. Charlebois ED, Perdreau-Remington F, Kreiswirth B, et al. Origins of community strains of methicillin-resistant Staphylococcus aureus. Clin Infect Dis 2004; 39: 47-54.
2. Otto M,. Community-associated MRSA: what makes them special? Int J Med Microbiol 2013; 303: 324-30.
3. Moran GJ, Krishnadasan A, Gorwitz RJ, et al. Methicillin-resistant S. aureus infections among patients in the emergency department. N Engl J Med 2006; 355: 666-74.
4. Parchman ML, Munoz A,. Risk factors for methicillin-resistant Staphylococcal aureus skin and soft tissue infections presenting in primary care: a South Texas Ambulatory Research Network (STARNet) study. J Am Board Fam Med 2009; 22: 375-9.
5. Forcade NA, Parchman ML, Jorgensen JH, et al. Prevalence, severity, and treatment of community-acquired methicillin-resistant Staphylococcus aureus (CA-MRSA) skin and soft tissue infections in 10 medical clinics in Texas: a South Texas Ambulatory Research Network (STARNet) study. J Am Board Fam Med 2011; 24: 543-50.
6. Labreche MJ, Lee GC, Attridge RT, et al. Treatment failure and costs in patients with methicillin-resistant Staphylococcus aureus (MRSA) skin and soft tissue infections: a South Texas Ambulatory Research Network (STARNet) study. J Am Board Fam Med 2013; 26: 508-17.
7. Kennedy AD, Otto M, Braughton KR, et al. Epidemic community-associated methicillin-resistant Staphylococcus aureus: recent clonal expansion and diversification. Proc Natl Acad Sci U S A 2008; 105: 1327-32.
8. Long SW, Williams D, Valson C, et al. A genomic day in the life of a clinical microbiology laboratory. J Clin Microbiol 2013; 51: 1272-7.
9. Fittipaldi N, Beres SB, Olsen RJ, et al. Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A Streptococcus. Am J Pathol 2012; 180: 1522-34.
10. Diep BA, Gill SR, Chang RF, et al. Complete genome sequence of USA300, an epidemic clone of community-acquired methicillin-resistant Staphylococcus aureus. Lancet 2006; 367: 731-9.
11. Enright MC, Day NP, Davies CE, Peacock SJ, Spratt BG,. Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. J Clin Microbiol 2000; 38: 1008-15.
12. Nusbaum C, Ohsumi TK, Gomez J, et al. Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. Nat Methods 2009; 6: 67-9.
13. Huson DH, Bryant D,. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 2006; 23: 254-67.
14. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S,. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30: 2725-9.
15. Tenover FC, McDougal LK, Goering RV, et al. Characterization of a strain of community-associated methicillin-resistant Staphylococcus aureus widely disseminated in the United States. J Clin Microbiol 2006; 44: 108-18.
16. Uhlemann AC, Kennedy AD, Martens C, Porcella SF, Deleo FR, Lowy FD,. Toward an understanding of the evolution of Staphylococcus aureus strain USA300 during colonization in community households. Genome Biol Evol 2012; 4: 1275-85.
17. Uhlemann AC, Otto M, Lowy FD, DeLeo FR,. Evolution of community- and healthcare-associated methicillin-resistant Staphylococcus aureus. Infect Genet Evol 2014; 21: 563-74.
18. Highlander SK, Hulten KG, Qin X, et al. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. BMC Microbiol 2007; 7: 99.
19. Mwangi MM, Wu SW, Zhou Y, et al. Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing. Proc Natl Acad Sci U S A 2007; 104: 9451-6.
20. Gordon NC, Price JR, Cole K, et al. Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing. J Clin Microbiol 2014; 52: 1182-91.
21. Eyre DW, Golubchik T, Gordon NC, et al. A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance. BMJ Open 2012; 2: e001124.
22. Koser CU, Holden MT, Ellington MJ, et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. N Engl J Med 2012; 366: 2267-75.
23. Didelot X, Bowden R, Wilson DJ, Peto TE, Crook DW,. Transforming clinical microbiology with bacterial genome sequencing. Nat Rev Genet 2012; 13: 601-12.