Detection of respiratory viruses in gargle specimens of healthy children

Journal of Clinical Virology

Volumn 64, Issue , 2015, Pages 59-63

  Morikawa, Saeko ^a   Hiroi, Satoshi ^a   Kase, Tetsuo ^a  

^a OSAKA PREFECTURAL INSTITUTE OF PUBLIC HEALTH   (Japan)

Author keywords

Coinfection; Gargle specimen; Healthy children; Real time PCR; Respiratory viruses

Indexed keywords

ADENOVIRIDAE; ARTICLE; ASYMPTOMATIC INFECTION; CHILD; CHILD HEALTH; CLINICAL ARTICLE; CORONAVIRUS; CORONAVIRUS 229E; CORONAVIRUS OC43; COUGHING; ENTEROVIRUS; FEMALE; FEVER; GARGLE; HEALTH STATUS; HKU1 VIRUS; HUMAN; HUMAN RESPIRATORY SYNCYTIAL VIRUS; IMMUNE SYSTEM; MALE; NOSE MUCUS; PARAINFLUENZA VIRUS; PARECHOVIRUS; PRESCHOOL CHILD; PREVALENCE; PRIORITY JOURNAL; RASH; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY TRACT DISEASE; RESPIRATORY VIRUS; RHINOVIRUS; SCHOOL CHILD; SORE THROAT; VIRAL RESPIRATORY TRACT INFECTION; VIRUS DETECTION; VIRUS STRAIN; CORONAVIRIDAE; GENETICS; HUMAN PARAINFLUENZA VIRUS 2; ISOLATION AND PURIFICATION; PHARYNX; POLYMERASE CHAIN REACTION; RESPIRATORY TRACT INFECTIONS; VIROLOGY; VIRUS;

ADENOVIRIDAE; ASYMPTOMATIC INFECTIONS; CHILD; CHILD, PRESCHOOL; CORONAVIRUS; ENTEROVIRUS; FEMALE; HUMANS; MALE; PARAINFLUENZA VIRUS 2, HUMAN; PARECHOVIRUS; PHARYNX; POLYMERASE CHAIN REACTION; REAL-TIME POLYMERASE CHAIN REACTION; RESPIRATORY SYNCYTIAL VIRUSES; RESPIRATORY TRACT INFECTIONS; RHINOVIRUS; VIRUSES;

EID: 84923382071     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2015.01.006     Document Type: Article

References (37)

1. Debiaggi M., Canducci F., Ceresola E.R., Clementi M. The role of infections and co-infections with newly identified and emerging respiratory viruses in children. Virol. J. 2012, 9:247.
2. Ali S.A., Gern J.E., Hertert T.V., Edwards K.M., Griffin M.R., Miller E.K., et al. Real-world comparison of two molecular methods for detection of respiratory viruses. Virol. J. 2011, 8:332.
3. Van den Hoogen B.G., de jong J.C., Groen J., Kuiten T., de Groot R., Fouchier R.A., Osterhaus A.D. A newly discovered human pneumovirus isolated from young children with respiratory tract disease. Nat. Med. 2001, 7:719-724.
4. Allander T., Tammi M.T., Eriksson M., Bjerkner A., Tiveljung-Lindell A., Andersson B. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:12891-12896.
5. Prill M.M., Iwane M.K., Edward K.M., Williams J.V., Weinberg G.A., Staat M.A., et al. Human coronavirus in young children hospitalized for acute respiratory illness and asymptomatic controls. Pediatr. Infect. Dis. J. 2012, 31(3):235-240.
6. von Linstow M.L., Hogh M., Hogh B. Clinical and epidemiologic characteristics of human bocavirus in Danish infants: results from a prospective birth cohort study. Pediatr. Infect. Dis. J. 2008, 27:897-902.
7. Jin Y., Yuan X.H., Xie Z.P., Gao H.C., Song J.R., Zhang R.F., et al. Prevalence and clinical characterization of a newly identified human rhinovirus C species in children with acute respiratory tract infections. J. Clin. Microviol. 2009, 47:2895-2900.
8. Ishiko H., Shimada Y., Yonaha M., Hashimoto O., Hayashi A., Sakae K., Takeda N. Molecular diagnosis of human enteroviruses by phylogeny-based classification by use of the VP4 sequence. J. Infect. Dis. 2002, 185(6):744-754.
9. Mclntyre C.L., Knowles N.J., Simmonds P. Proposals for the classification of human rhinovirus species A, B and C into genotypically assigned types. J. Gen. Virol. 2013, 94:1791-1806.
10. Henquell C., Mirand A., Deusebis A.L., Regagnon C., Archimbaud C., Chambon M., et al. Prospective genotyping of human rhinoviruses in children and adults during the winter of 2009-2010. J. Clin. Virol. 2012, 53:280-284.
11. Kaida A., Kubo H., Takakura K., Togawa M., Shiomi M., Koudera U., Iritani N. Molecular epidemiology of human rhinovirus C in patients with acute respiratory tract infections in Osaka City, Japan. Jpn. J. Infect. Dis. 2011, 64:488-492.
12. Simmonds P., Mclntyre C., Savolainen-kopra C., Tapparel C., Mackay I.M., Hovi T. Proposals for the classification of human rhinovirus species C into genotypically assigned types. J. Gen. Virol. 2010, 91:2409-2419.
13. Picornaviridae Study Group. (accessed 02.09.14.). http://www.picornaviridae.com.
14. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4(4):406-425.
15. Imakita M., Shiraki K., Yutani C., Ishibashi-Umeda H. Pneumonia caused by rhinovirus. Clin. Infect. Dis. 2000, 30:611-612.
16. Jackson D.J., Gangnon R.E., Evans M.D., Roberg K.A., Anderson E.L., Pappas T.E., et al. Wheezing rhinovirus illnesses in early life predict asthma development in high-risk children. Am. J. Respir. Crit. Care. Med. 2008, 178:667-672.
17. Jansen R.R., Wieringa J., Koekkoek S.M., Visser C.E., Pajkrt D., Molenkamp R., et al. Frequent detection of respiratory viruses without symptoms: toward defining clinically relevant cutoff values. J. Clin. Microviol. 2011, 49(7):2631-2636.
18. Camargo C.N., Carraro E., Granato C.F., Bellei N. Human rhinovirus infections in symptomatic and asymptomatic subjects. Braz. J. Microbiol. 2012, 43(4):1641-1645.
19. Jartti T., Lehtinen P., Vuorinen T., Koskenvuo Ruuskanen O. Persistence of rhinovirus and enterovirus RNA after acute respiratory illness in children. J. Med. Virol. 2004, 72:695-699.
20. Harvala H., Robertson I., McWilliam Leitch E.C., BenschopK.Wolthers K.C., Templeton K., Simmonds P. Epidemiology and clinical associations of human parechovirus respiratory infections. J. Clin. Microbiol. 2008, 46(10):3446-3453.
21. Kolehmainen P., Oikarinen S., Koskiniemi M., Simell O., Ilonen J., Knip M., Hyöty H., Tauriainen S. Human parechoviruses are frequently detected in stool of healthy Finnish children. J. Clin. Virol. 2012, 54(2):156-161.
22. Hara M., Takao S., Shimazu Y., Nishimura T. Three-year study of viral etiology and features of febrile respiratory tract infections in Japanese pediatric outpatients. Pediatr. Infect. Dis. J. 2014, 33:687-692.
23. Brittain-Long R., Andersson L.M., Olofsson S., Lindh M., Westin J. Seasonal variations of 15 respiratory agents illustrated by the application of a multiplex polymerase chain reaction assay. Scand. J. Infect. Dis. 2012, 44:9-17.
24. Kusel M.M., de Klerk N.H., Holt P.G., Kebadze T., Johnston S.L., Sly P.D. Role of respiratory viruses in acute upper and lower respiratory tract illness in the first year of life: a birth cohort study. Pediatr. Infect. Dis. J. 2006, 25:680-686.
25. Fairchok M.P., Martin E.T., Chambers S., Kuypers J., Behrens M., Braun L.E., Englund J.A. Epidemiology of viral respiratory tract infections in a prospective cohort of infants and toddlers attending daycare. J. Clin. Virol. 2010, 49:16-20.
26. Wishaupt J.O., Russcher A., Smeets L.C., Versteegh F.G.A., Hartwig N.G. Clinical impact of RT-PCR for pediatric acute respiratory infections: a controlled clinical trial. Pediatrics 2011, 128:e1113-e1120.
27. Templeton K.E., Scheltinga S.A., Beersma M.F.C., Kroes A.C.M., Claas E.C.J. Rapid and sensitive method using multiplex real-time PCR for diagnosis of infections by influenza A and influenza B viruses: respiratory syncytial virus, and parainfluenza viruses 1,2,3, and 4. J. Clin. Microbiol. 2004, 42(4):1564-1569.
28. Chidlow G.R., Harnett G.B., Shellam G.R., Smith D.W. An economical tandem multiplex real-time PCR technique for the detection of a comprehensive range of respiratory pathogens. Viruses 2009, 1:42-56.
29. van de Pol A.C., van Loon A.M., Wolfs T.F.W., Jansen N.J.G., Nijhuis M., Breteler E.K., Schuurman R., Rossen J.W.A. Increased detection of respiratory syncytial virus: parainfluenza viruses, and adenoviruses with real-time PCR in samples from patients with respiratory symptoms. J. Clin. Microbiol. 2007, 45(7):2260-2262.
30. Mentel R., Wegner U., Bruns R., Gürtler L. Real-time to improve the diagnosis of respiratory syncytial virus infection. J. Med. Microbiol. 2003, 52:893-896.
31. Reymond F., Carbonneau J., Boucher N., Robitaille L., Boisvert S., Wu W., et al. Comparison of automated microarray detection with real-time PCR assays for detection of respiratory viruses in specimens obtained from children. J. Clin. Microbiol. 2009, 47(3):743-750.
32. Tapparel C., Cordey S., Belle S.V., Turin L., Lee W., Regamey N., et al. New molecular detection tools adapted to emerging rhinoviruses and enteroviruses. J. Clin. Microbiol. 2009, 47(6):1742-1749.
33. Neske F., Blessing K., Tollmann F., Schubert J., Rethwilm A., Kreth H.W., Real-time Weissbrich B. for diagnosis of human bocavirus infections and phylogenetic analysis. J. Clin. Microbiol. 2007, 45(7):2116-2122.
34. Nix W., Maher K., Johansson E.S., Niklasson B., Lindberg A.M., Pallansch M.A., Oberste M.S. Detection of all known parechoviruses by real-time PCR. J. Clin. Microbiol. 2008, 46(8):2519-2524.
35. Wong S., Pabbaraju K., Pang X.L., Lee B.E., Fox J.D. Detection of a broad range of human adenoviruses in respiratory tract samples using a sensitive multiplex real-time PCR assay. J. Med. Virol. 2008, 80(5):856-865.
36. Nakauchi M., Yasui Y., Miyoshi T., Minagawa H., Tanaka T., Tashiro M., Kageyama T. One-step real-time reverse transcription-PCR assays for detecting and subtyping pandemic influenza A/H1N1 2009, seasonal influenza A/H1N1, and seasonal influenza A/H3N2 viruses. J. Virol. Methods 2011, 171:156-162.
37. Nakauchi M., Takayama I., Takahashi H., Oba K., Kubo H., Kaida A., Tashiro M., Kageyama T. Real-time RT-PCR assays for discriminating influenza B virus Yamagata and Victoria lineages. J. Virol. Methods 2014, 205:110-115.