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Volumn 4, Issue , 2014, Pages

Sequence-motif Detection of NAD(P)-binding Proteins: Discovery of a Unique Antibacterial Drug Target

Author keywords

[No Author keywords available]

Indexed keywords

ANTIINFECTIVE AGENT; CARRIER PROTEIN; ENOYL ACYL CARRIER PROTEIN REDUCTASE (NADH); NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE;

EID: 84923377191     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep06471     Document Type: Article
Times cited : (31)

References (21)
  • 1
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: A hub of integrated protein data
    • Magrane, M. & the, Uniprot & Consortium. UniProt Knowledgebase: a hub of integrated protein data. Database 2011, bar009 (2011).
    • (2011) Database , vol.2011 , pp. bar009
    • Magrane, M.1    Uniprot, T.2    Consortium3
  • 3
    • 67349218363 scopus 로고    scopus 로고
    • PARP inhibitors: New partners in the therapy of cancer and inflammatory diseases
    • Peralta-Leal, A. et al. PARP inhibitors: New partners in the therapy of cancer and inflammatory diseases. Free Radic. Biol. Med. 47, 13-26 (2009).
    • (2009) Free Radic. Biol. Med. , vol.47 , pp. 13-26
    • Peralta-Leal, A.1
  • 4
    • 77952564025 scopus 로고    scopus 로고
    • Poly ADP-ribose polymerase-1 and health
    • Kirkland, J. B. Poly ADP-ribose polymerase-1 and health. Exp. Biol. Med. 235, 561-568 (2010).
    • (2010) Exp. Biol. Med. , vol.235 , pp. 561-568
    • Kirkland, J.B.1
  • 5
  • 6
    • 0001290045 scopus 로고    scopus 로고
    • PROSITE: A documented database using patterns and profiles as motif descriptors
    • Sigrist, C. J. et al. PROSITE: a documented database using patterns and profiles as motif descriptors. Brief. Bioinform. 3, 265-274 (2002).
    • (2002) Brief. Bioinform. , vol.3 , pp. 265-274
    • Sigrist, C.J.1
  • 7
    • 0042093623 scopus 로고    scopus 로고
    • Identifying property based sequence motifs in protein families and superfamilies: Application to DNase-1 related endonucleases
    • Mathura, V. S., Schein, C. H. & Braun, W. Identifying property based sequence motifs in protein families and superfamilies: application to DNase-1 related endonucleases. Proteins 19, 1381-1390 (2003).
    • (2003) Proteins , vol.19 , pp. 1381-1390
    • Mathura, V.S.1    Schein, C.H.2    Braun, W.3
  • 8
    • 33644876022 scopus 로고    scopus 로고
    • The PROSITE database
    • Hulo, N. et al. The PROSITE database. Nucleic Acids Res. 34, D227-D230 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. D227-D230
    • Hulo, N.1
  • 9
    • 40749111548 scopus 로고    scopus 로고
    • ConFunc-functional annotation in the twilight zone
    • Wass, M. N. & Sternberg, M. J. E. ConFunc-functional annotation in the twilight zone Bioinformatics 24, 798-806 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 798-806
    • Wass, M.N.1    Sternberg, M.J.E.2
  • 10
    • 77955814959 scopus 로고    scopus 로고
    • A structural-alphabet-based strategy for finding structural motifs across protein families
    • Wu, C. Y., Chen, Y. C. & Lim, C. A structural-alphabet-based strategy for finding structural motifs across protein families. Nucleic Acids Res., 38, e150 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. e150
    • Wu, C.Y.1    Chen, Y.C.2    Lim, C.3
  • 11
    • 84862068214 scopus 로고    scopus 로고
    • Hidden Relationship between conserved residues and locally conserved phosphate-binding structures in NAD(P)-binding Proteins
    • Wu, C. Y., Hwa, Y.-H., Chen, Y. C. & Lim, C. Hidden Relationship between conserved residues and locally conserved phosphate-binding structures in NAD(P)-binding Proteins. J. Phys. Chem. B 116, 5644-5652 (2012).
    • (2012) J. Phys. Chem. B , vol.116 , pp. 5644-5652
    • Wu, C.Y.1    Hwa, Y.-H.2    Chen, Y.C.3    Lim, C.4
  • 12
    • 1542563485 scopus 로고
    • Evolutionary and structural relationships among dehydrogenases
    • Rossmann, M. G., Liljas, A., Branden, C. I. & Banaszak, L. T. Evolutionary and structural relationships among dehydrogenases. The Enzymes 11, 61-102 (1975).
    • (1975) The Enzymes , vol.11 , pp. 61-102
    • Rossmann, M.G.1    Liljas, A.2    Branden, C.I.3    Banaszak, L.T.4
  • 13
    • 0029845902 scopus 로고    scopus 로고
    • The nicotinamide dinucleotide bindingmotif: A comparison of nucleotide binding proteins
    • Bellamacina, C. R. The nicotinamide dinucleotide bindingmotif: a comparison of nucleotide binding proteins. Faseb J. 10, 1257-1269 (1996).
    • (1996) Faseb J. , vol.10 , pp. 1257-1269
    • Bellamacina, C.R.1
  • 14
    • 0036396532 scopus 로고    scopus 로고
    • GXXXG and GXXXA motifs stabilize fad and nad(p)-binding rossmann folds through ca-ho hydrogen bonds and van der waals interactions
    • Kleiger, G. & Eisenberg, D. GXXXG and GXXXA Motifs Stabilize FAD and NAD(P)-binding Rossmann Folds Through Ca-HO Hydrogen Bonds and van der Waals Interactions. J. Mol. Biol. 323, 69-76 (2002).
    • (2002) J. Mol. Biol. , vol.323 , pp. 69-76
    • Kleiger, G.1    Eisenberg, D.2
  • 15
    • 3042809615 scopus 로고    scopus 로고
    • Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: An automated all-against-all structural comparison using geometric matching
    • Brakoulias, A. & Jackson, R. M. Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: An automated all-against-all structural comparison using geometric matching. Proteins. 56, 250-260 (2004).
    • (2004) Proteins , vol.56 , pp. 250-260
    • Brakoulias, A.1    Jackson, R.M.2
  • 16
    • 0036616218 scopus 로고    scopus 로고
    • The protein data bank. Acta crystallogr
    • Berman, H. M. et al. The Protein Data Bank. Acta Crystallogr. Sect. D-Biol. Crystallogr. 58, 899-907 (2002).
    • (2002) Sect. D-Biol. Crystallogr. , vol.58 , pp. 899-907
    • Berman, H.M.1
  • 17
    • 79959446397 scopus 로고    scopus 로고
    • Enoyl acyl carrier protein reductase inhibitors: A patent review (2006-2010)
    • Lu, X., Huang, K. & You, Q. Enoyl acyl carrier protein reductase inhibitors: a patent review (2006-2010). Expert Opin. Ther. Patents 21, 1007-1022 (2011).
    • (2011) Expert Opin. Ther. Patents , vol.21 , pp. 1007-1022
    • Lu, X.1    Huang, K.2    You, Q.3
  • 18
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W. & Godzik, A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 19
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 20
    • 84880998440 scopus 로고    scopus 로고
    • Porter, PaleAle 4 0: High-accuracy prediction of protein secondary structure and relative solvent accessibility
    • Mirabello, C. & Pollastri, G. Porter, PaleAle 4.0: high-accuracy prediction of protein secondary structure and relative solvent accessibility. Bioinformatics 29, 2056-2058 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 2056-2058
    • Mirabello, C.1    Pollastri, G.2
  • 21
    • 80054078476 scopus 로고    scopus 로고
    • Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
    • Sievers, F. et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. 7, 539 (2011).
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 539
    • Sievers, F.1


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