Identification of several clades of novel single-stranded circular DNA viruses with conserved stem-loop structures in pig feces

Archives of Virology

Volumn 160, Issue 1, 2015, Pages 353-358

  Cheung, Andrew K ^a   Ng, Terry Fei Fan ^b   Lager, Kelly M ^a   Alt, David P ^a   Delwart, Eric ^b   Pogranichniy, Roman M ^c  

^a NATIONAL ANIMAL DISEASE CENTER   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA VIRUS; SINGLE STRANDED DNA; VIRUS DNA; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; CLASSIFICATION; DIARRHEA; FECES; GENE EXPRESSION REGULATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGEOGRAPHY; PHYSIOLOGY; SWINE; SWINE DISEASE; VETERINARY; VIROLOGY;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CONSERVED SEQUENCE; DIARRHEA; DNA VIRUSES; DNA, SINGLE-STRANDED; DNA, VIRAL; FECES; GENE EXPRESSION REGULATION, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGEOGRAPHY; SWINE; SWINE DISEASES; VIRAL PROTEINS;

EID: 84923377042     PISSN: 03048608     EISSN: 14328798     Source Type: Journal    
DOI: 10.1007/s00705-014-2234-9     Document Type: Article

References (19)

1. Cheung AK, Ng TF, Lager KM, Bayles DO, Alt DP, Delwart EL, Pogranichniy RM, Kehrli ME Jr (2013) A divergent clade of circular single-stranded DNA viruses from pig feces. Arch Virol 158:2157–2162
2. Cheung AK, Ng TF, Lager KM, Alt DP, Delwart EL, Pogranichniy RM (2014) Identification of a novel single-stranded circular DNA virus in pig feces. Genome Announc 2(2):e00347-14. doi:10.1128/genomeA.00347-14
3. Cheung AK, Ng TF, Lager KM, Alt DP, Delwart EL, Pogranichniy RM (2014) Unique circovirus-like genome detected in pig feces. Genome Announc 2(2):e00251-14. doi:10.1128/genomeA.00251-14
4. Delwart E, Li L (2012) Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes. Virus Res 164:114–121
5. Dunlap DS, Ng TF, Rosario K, Barbosa JG, Greco AM, Breitbart M, Hewson I (2013) Molecular and microscopic evidence of viruses in marine copepods. Proc Natl Acad Sci USA 110:1375–1380
6. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755
7. Katoh K, Kuma K, Miyata T, Toh H (2005) Improvement in the accuracy of multiple sequence alignment program MAFFT. Genome Inform 16:22–33
8. Labonte JM, Suttle CA (2013) Previously unknown and highly divergent ssDNA viruses populate the oceans. ISME J 7:2169–2177
9. Li L, Kapoor A, Slikas B, Bamidele OS, Wang C, Shaukat S, Masroor MA, Wilson ML, Ndjango JB, Peeters M, Gross-Camp ND, Muller MN, Hahn BH, Wolfe ND, Triki H, Bartkus J, Zaidi SZ, Delwart E (2010) Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces. J Virol 84:1674–1682
10. Li L, Victoria JG, Wang C, Jones M, Fellers GM, Kunz TH, Delwart E (2010) Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J Virol 84:6955–6965
11. Muhire B, Martin DP, Brown JK, Navas-Castillo J, Moriones E, Zerbini FM, Rivera-Bustamante R, Malathi VG, Briddon RW, Varsani A (2013) A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol 158:1411–1424
12. Ng TF, Driscoll C, Carlos MP, Prioleau A, Schmieder R, Dwivedi B, Wong J, Cha Y, Head S, Breitbart M, Delwart E (2013) Distinct lineage of vesiculovirus from big brown bats, United States. Emerg Infect Dis 19:1978–1980
13. Ng TF, Mesquita JR, Nascimento MS, Kondov NO, Wong W, Reuter G, Knowles NJ, Vega E, Esona MD, Deng X, Vinje J, Delwart E (2014) Feline fecal virome reveals novel and prevalent enteric viruses. Vet Microbiol 171:102–111
14. Phan TG, Kapusinszky B, Wang C, Rose RK, Lipton HL, Delwart EL (2011) The fecal viral flora of wild rodents. PLoS Pathogens 7:1002218
15. Reuter G, Boros A, Delwart E, Pankovics P (2014) Novel circular single-stranded DNA virus from turkey faeces. Arch Virol. doi:10.1007/s00705-014-2025-3
16. Rosario K, Duffy S, Breitbart M (2012) A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics. Arch Virol 157:1851–1871
17. Sikorski A, Arguello-Astorga GR, Dayaram A, Dobson RC, Varsani A (2012) Discovery of a novel circular single-stranded DNA virus from porcine faeces. Arch Virol 158(1):283–289. doi:10.1007/s00705-012-1470-0
18. Smits SL, Raj VS, Oduber MD, Schapendonk CM, Bodewes R, Provacia L, Stittelaar KJ, Osterhaus AD, Haagmans BL (2013) Metagenomic analysis of the ferret fecal viral flora. PLoS One 8:e71595
19. Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415