Similarity is not enough: Tipping points of Ebola Zaire mortalities

Physica A: Statistical Mechanics and its Applications

Volumn 427, Issue , 2015, Pages 277-281

  Phillips, J C ^a  

^a RUTGERS UNIVERSITY   (United States)

Author keywords

Bioinformatic; Criticality; Scaling; Self organized; Strand; Thermodynamic

Indexed keywords

BIOINFORMATICS; CRITICALITY (NUCLEAR FISSION); GLYCOPROTEINS; THERMODYNAMICS; TRANSMISSIONS;

AMPHIPHILICS; EXTERNAL FACTORS; MOLECULAR MECHANISM; OXIDATIVE MECHANISM; SCALING; SELF-ORGANIZED; STRAND; TIPPING POINT;

DISEASES;

EID: 84923353030     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2015.02.056     Document Type: Article

References (30)

1. S. Altschul, W. Gish, and W. Miller Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
2. H. Feldmann, and T.W. Geisbert Ebola haemorrhagic fever Lancet 377 2011 849 862
3. B. Manicassamy, J. Wang, and E. Rumschlag Characterization of Marburg virus glycoprotein in viral entry Virology 358 2007 79 88
4. A. Timen, M.P.G. Koopmans, and A.C.T.M. Vossen Response to imported case of marburg hemorrhagic fever, the Netherlands Emerg. Infect. Dis. 15 2009 1171 1175
5. J.E. Lee, M.L. Fusco, and A.J. Hessell Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor Nature 454 2008 177 182
6. D. Dube, M.B. Brecher, and S.E. Delos The primed ebolavirus glycoprotein (19-kilodalton GP(1, 2)): sequence and residues critical for host cell binding J. Virol. 83 2009 2883 2891
7. O. Noyor, K. Matsuno, and M. Kajihara Differential potential for envelope glycoprotein-mediated steric shielding of host cell surface proteins among filoviruses Virology 446 2013 152 161
8. A. Agopian, and S. Castano Structure and orientation study of Ebola fusion peptide inserted in lipid membrane models Biochim. Biophys. Acta-Biomemb. 1838 Part: B 2014 117 126
9. N.J. Lennemann, B.A. Rhein, and E. Ndungo Comprehensive functional analysis of N-linked glycans on Ebola virus GP1 mBio 5 2014 e00862 13
10. S.M. Gregory, P. Larsson, and E.A. Nelson Ebolavirus entry requires a compact hydrophobic fist at the tip of the fusion loop J. Virol. 88 2014 6636 6649
11. E.E.H. Tran, J.A. Simmons, and A. Bartesaghi Spatial localization of the Ebola virus glycoprotein mucin-like domain determined by cryo-electron tomography J. Virol. 88 2014 10958 10962
12. S.K. Gire, A. Goba, and K.G. Andersen Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak Science 345 2014 1369 1372
13. J.C. Phillips, Fractal evolution of hemagglutinin and neuraminidase viral dynamics: A(H1N1 and H3N2), 2013. arXiv:1303.4383.
14. M.T. Ladwell The Tipping Point 2000 Little, Brown
15. P. Bak, and K. Chen Self-organized criticality Sci. Am. 264 1991 46 53
16. K.G. Wilson The renormalization group and critical phenomena Rev. Modern Phys. 55 1983 583 600
17. J.C. Phillips Fractals and self-organized criticality in proteins Physica A 415 2014 440 448
18. M.A. Moret, and G.F. Zebende Amino acid hydrophobicity and accessible surface area Phys. Rev. E 75 2007 011920
19. J. Kyte, and R.F. Doolittle A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 157 1982 105 132
20. J.C. Phillips Scaling and self-organized criticality in proteins: lysozyme c Phys. Rev. E 80 2009 051916
21. J.C. Phillips, Thermodynamic description of beta amyloid formation using the fractal hydrophobicity scale, 2013. arXiv1310.2528.
22. E. Krissinel On the relationship between sequence and structure similarities in proteomics Bioinformatics 23 2007 717 723
23. D. Schubert, C. Behl, R. Lesley, A. Brack, R. Dargusch, Y. Sagara, and H. Kimura Amyloid peptides are toxic via a common oxidative mechanism Proc. Natl. Acad. Sci. 92 1995 1989 1993
24. J.C. Phillips, Filovirus glycoprotein sequence, structure and virulence, 2014. arXiv:1410.1417.
25. J. Laherrere, and D. Sornette Eur. Phys. J. B 2 1998 525
26. G.G. Naumis, and J.C. Phillips Diffusion of knowledge and globalization in the Web of twentieth century science Physica A 391 2012 3995 4003
27. K. Fujiwara, H. Toda, and M. Ikeguchi Dependence of alpha-helical and beta-sheet amino acid propensities on the overall protein fold type BMC Struct. Biol. 12 2012 18
28. P.C. Simister, F. Schaper, and N. O'Reilly Self-organization and regulation of intrinsically disordered proteins with folded N-termini PLoS Biol. 9 2011 e1000591
29. S. Fink, Ebola's Mystery: One Boy Lives, Another Dies. New York Times A1, Nov. 10, 2014.
30. D.J. Majoney, D.F. Stojdl, and G. Laird Can viruses treat cancer? Sci. Am. 311 11 2014 54