-
1
-
-
84894105335
-
A survey of molecular descriptors used in mass spectrometry based proteomics
-
Audain, E., Sanchez, A., Vizcaino, J. A., and Perez-Riverol, Y. (2014). A survey of molecular descriptors used in mass spectrometry based proteomics. Curr. Top. Med. Chem. 14, 388-397. doi: 10.2174/1568026613666131204113537
-
(2014)
Curr. Top. Med. Chem.
, vol.14
, pp. 388-397
-
-
Audain, E.1
Sanchez, A.2
Vizcaino, J.A.3
Perez-Riverol, Y.4
-
2
-
-
84929500840
-
Predicting retention time in hydrophilic interaction liquid chromatography mass spectrometry and its use for peak annotation in metabolomics
-
Cao, M., Fraser, K., Huege, J., Featonby, T., Rasmussen, S., and Jones, C., et al. (2014). Predicting retention time in hydrophilic interaction liquid chromatography mass spectrometry and its use for peak annotation in metabolomics. Metabolomics. doi: 10.1007/s11306-014-0727-x
-
(2014)
Metabolomics
-
-
Cao, M.1
Fraser, K.2
Huege, J.3
Featonby, T.4
Rasmussen, S.5
Jones, C.6
-
3
-
-
84936916896
-
Robust locally weighted regression and smoothing scatterplots
-
Cleveland, W. S. (1979). Robust locally weighted regression and smoothing scatterplots. J. Am. Stat. Assoc. 74, 829-836. doi: 10.1080/01621459.1979.10481038
-
(1979)
J. Am. Stat. Assoc.
, vol.74
, pp. 829-836
-
-
Cleveland, W.S.1
-
4
-
-
79959913950
-
Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
-
Dunn, W. B., Broadhurst, D., Begley, P., Zelena, E., Francis-McIntyre, S., Anderson, N., et al. (2011). Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat. Protoc. 6, 1060-1083. doi: 10.1038/nprot.2011.335
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1060-1083
-
-
Dunn, W.B.1
Broadhurst, D.2
Begley, P.3
Zelena, E.4
Francis-McIntyre, S.5
Anderson, N.6
-
5
-
-
34547556301
-
LIPID MAPS online tools for lipid research
-
Fahy, E., Sud, M., Cotter, D., and Subramaniam, S. (2007). LIPID MAPS online tools for lipid research. Nucleic Acids Res. 35, 606-612. doi: 10.1093/nar/gkm324
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 606-612
-
-
Fahy, E.1
Sud, M.2
Cotter, D.3
Subramaniam, S.4
-
6
-
-
58149492631
-
Targeted analysis of ganglioside and sulfatide molecular species by LC/ESI-MS/MS with theoretically expanded multiple reaction monitoring
-
Ikeda, K., Shimizu, T., and Taguchi, R. (2008). Targeted analysis of ganglioside and sulfatide molecular species by LC/ESI-MS/MS with theoretically expanded multiple reaction monitoring. J. Lipid Res. 49, 2678-2689. doi: 10.1194/jlr. D800038-JLR200
-
(2008)
J. Lipid Res.
, vol.49
, pp. 2678-2689
-
-
Ikeda, K.1
Shimizu, T.2
Taguchi, R.3
-
7
-
-
41249101849
-
Glycerophospholipid identification and quantitation by electrospray ionization mass spectrometry
-
Ivanova, P. T., Milne, S. B., Byrne, M. O., Xiang, Y., and Brown, H. A. (2007). Glycerophospholipid identification and quantitation by electrospray ionization mass spectrometry. Methods Enzymol. 432, 21-57. doi: 10.1016/S0076-6879(07)32002-8
-
(2007)
Methods Enzymol
, vol.432
, pp. 21-57
-
-
Ivanova, P.T.1
Milne, S.B.2
Byrne, M.O.3
Xiang, Y.4
Brown, H.A.5
-
8
-
-
34547495638
-
QSRR: Quantitative structure-(chromatographic) retention relationships
-
Kaliszan, R. (2007). QSRR: Quantitative structure-(chromatographic) retention relationships. Chem. Rev. 107, 3212-3246. doi: 10.1021/cr068412z
-
(2007)
Chem. Rev.
, vol.107
, pp. 3212-3246
-
-
Kaliszan, R.1
-
9
-
-
54949129419
-
ProteoWizard: open source software for rapid proteomics tools development
-
Kessner, D., Chambers, M., Burke, R., Agus, D., and Mallick, P. (2008). ProteoWizard: open source software for rapid proteomics tools development. Bioinformatics 24, 2534-2536. doi: 10.1093/bioinformatics/btn323
-
(2008)
Bioinformatics
, vol.24
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
10
-
-
84881476562
-
LipidBlast in silico tandem mass spectrometry database for lipid identification
-
Kind, T., Liu, K., Lee, D. Y., Defelice, B., Meissen, J. K., and Fiehn, O. et al. (2013). LipidBlast in silico tandem mass spectrometry database for lipid identification. Nat. Methods 10, 755-758. doi: 10.1038/nmeth.2551
-
(2013)
Nat. Methods.
, vol.10
, pp. 755-758
-
-
Kind, T.1
Liu, K.2
Lee, D.Y.3
Defelice, B.4
Meissen, J.K.5
Fiehn, O.6
-
11
-
-
40649126955
-
Metabolic fingerprinting investigation of Artemisia annua L. in different stages of development by gas chromatography and gas chromatography-mass spectrometry
-
Ma, C., Wang, H., Lu, X., Xu, G., and Liu, B. (2008). Metabolic fingerprinting investigation of Artemisia annua L. in different stages of development by gas chromatography and gas chromatography-mass spectrometry. J. Chromatogr. A 1186, 412-419. doi: 10.1016/j.chroma.2007.09.023
-
(2008)
J. Chromatogr. A.
, vol.1186
, pp. 412-419
-
-
Ma, C.1
Wang, H.2
Lu, X.3
Xu, G.4
Liu, B.5
-
12
-
-
0032076034
-
Aligning of single and multiple wavelength chromatographic profiles for chemometric data analysis using correlation optimised warping
-
Nielsen, N.-P. V., Carstensen, J. M., and Smedsgaard, J. (1998). Aligning of single and multiple wavelength chromatographic profiles for chemometric data analysis using correlation optimised warping. J. Chromatogr. A 805, 17-35. doi: 10.1016/S0021-9673(98)00021-1
-
(1998)
J. Chromatogr. A.
, vol.805
, pp. 17-35
-
-
Nielsen, N.-P.1
Carstensen, J.M.2
Smedsgaard, J.3
-
13
-
-
84907509665
-
Separation and quantification of 2-acyl-1-lysophospholipids and 1-acyl-2-lysophospholipids in biological samples by LC-MS/MS
-
Okudaira, M., Inoue, A., Shuto, A., Nakanaga, K., Kano, K., Makide, K., et al. (2014). Separation and quantification of 2-acyl-1-lysophospholipids and 1-acyl-2-lysophospholipids in biological samples by LC-MS/MS. J. Lipid Res. 55, 2178-2192. doi: 10.1194/jlr. D048439
-
(2014)
J. Lipid Res.
, vol.55
, pp. 2178-2192
-
-
Okudaira, M.1
Inoue, A.2
Shuto, A.3
Nakanaga, K.4
Kano, K.5
Makide, K.6
-
14
-
-
84879501266
-
Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 Workshop report
-
Perez-Riverol, Y., Hermjakob, H., Kohlbacher, O., Martens, L., Creasy, D., Cox, J., et al. (2013). Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 Workshop report. J. Proteomics 87, 134-138. doi: 10.1016/j.jprot.2013.01.019
-
(2013)
J. Proteomics.
, vol.87
, pp. 134-138
-
-
Perez-Riverol, Y.1
Hermjakob, H.2
Kohlbacher, O.3
Martens, L.4
Creasy, D.5
Cox, J.6
-
15
-
-
79951892537
-
The human serum metabolome
-
Psychogios, N., Hau, D. D., Peng, J., Cuo, A. C., Mandal, R., Bouatra, S., et al. (2011). The human serum metabolome. PLoS ONE 6:e16957. doi: 10.1371/journal.pone.0016957
-
(2011)
PLoS ONE
, vol.6
-
-
Psychogios, N.1
Hau, D.D.2
Peng, J.3
Cuo, A.C.4
Mandal, R.5
Bouatra, S.6
-
16
-
-
78149356687
-
Lipidomics reveals a remarkable diversity of lipids in human plasma
-
Quehenberger, O., Armando, A. M., Brown, A. H., Milne, S. B., Myers, D. S., Merrill, A. H., et al. (2010). Lipidomics reveals a remarkable diversity of lipids in human plasma. J. Lipid Res. 51, 3299-3305. doi: 10.1194/jlr. M009449
-
(2010)
J. Lipid Res.
, vol.51
, pp. 3299-3305
-
-
Quehenberger, O.1
Armando, A.M.2
Brown, A.H.3
Milne, S.B.4
Myers, D.S.5
Merrill, A.H.6
-
17
-
-
68349095535
-
Quantitative analysis of sphingolipids for lipidomics using triple quadrupole and quadrupole linear ion trap mass spectrometers
-
Shaner, R. L., Allegood, J. C., Park, H., Wang, E., Kelly, S., Haynes, C. A., et al. (2009). Quantitative analysis of sphingolipids for lipidomics using triple quadrupole and quadrupole linear ion trap mass spectrometers. J. Lipid Res. 50, 1692-1707. doi: 10.1194/jlr. D800051-JLR200
-
(2009)
J. Lipid Res.
, vol.50
, pp. 1692-1707
-
-
Shaner, R.L.1
Allegood, J.C.2
Park, H.3
Wang, E.4
Kelly, S.5
Haynes, C.A.6
-
18
-
-
33646401510
-
On the risk of false positive identification using multiple ion monitoring in qualitative mass spectrometry: large-scale intercomparison with a comprehensive mass spectral library
-
Stein, S. E., and Heller, D. N. (2006). On the risk of false positive identification using multiple ion monitoring in qualitative mass spectrometry: large-scale intercomparison with a comprehensive mass spectral library. J. Am. Soc. Mass Spectrom. 17, 823-835. doi: 10.1016/j.jasms.2006.02.021
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 823-835
-
-
Stein, S.E.1
Heller, D.N.2
-
19
-
-
77949286280
-
Differential metabolomics software for capillary electrophoresis-mass spectrometry data analysis
-
Sugimoto, M., Hirayama, A., Ishikawa, T., Robert, M., Baran, R., Uehara, K., et al. (2009). Differential metabolomics software for capillary electrophoresis-mass spectrometry data analysis. Metabolomics 6, 27-41. doi: 10.1007/s11306-009-0175-1
-
(2009)
Metabolomics
, vol.6
, pp. 27-41
-
-
Sugimoto, M.1
Hirayama, A.2
Ishikawa, T.3
Robert, M.4
Baran, R.5
Uehara, K.6
-
20
-
-
84857124407
-
Bioinformatics tools for mass spectroscopy-based metabolomic data processing and analysis
-
Sugimoto, M., Kawakami, M., Robert, M., Soga, T., and Tomita, M. (2012). Bioinformatics tools for mass spectroscopy-based metabolomic data processing and analysis. Curr. Bioinform. 7, 96-108. doi: 10.2174/157489312799304431
-
(2012)
Curr. Bioinform.
, vol.7
, pp. 96-108
-
-
Sugimoto, M.1
Kawakami, M.2
Robert, M.3
Soga, T.4
Tomita, M.5
-
21
-
-
77953361129
-
Precise and global identification of phospholipid molecular species by an Orbitrap mass spectrometer and automated search engine Lipid Search
-
Taguchi, R., and Ishikawa, M. (2010). Precise and global identification of phospholipid molecular species by an Orbitrap mass spectrometer and automated search engine Lipid Search. J. Chromatogr. A 1217, 4229-4239. doi: 10.1016/j.chroma.2010.04.034
-
(2010)
J. Chromatogr. A.
, vol.1217
, pp. 4229-4239
-
-
Taguchi, R.1
Ishikawa, M.2
-
22
-
-
4444351752
-
Correlation optimized warping and dynamic time warping as preprocessing methods for chromatographic data
-
Tomasi, G., van den Berg, F., and Andersson, C. (2004). Correlation optimized warping and dynamic time warping as preprocessing methods for chromatographic data. J. Chemometr. 18, 231-241. doi: 10.1002/cem.859
-
(2004)
J. Chemometr.
, vol.18
, pp. 231-241
-
-
Tomasi, G.1
van den Berg, F.2
Andersson, C.3
-
23
-
-
84878274712
-
MRMPROBS: a data assessment and metabolite identification tool for large-scale multiple reaction monitoring based widely targeted metabolomics
-
Tsugawa, H., Arita, M., Kanazawa, M., Ogiwara, A., Bamba, T., and Fukusaki, E., et al. (2013). MRMPROBS: a data assessment and metabolite identification tool for large-scale multiple reaction monitoring based widely targeted metabolomics. Anal. Chem. 85, 5191-5199. doi: 10.1021/ac400515s
-
(2013)
Anal. Chem.
, vol.85
, pp. 5191-5199
-
-
Tsugawa, H.1
Arita, M.2
Kanazawa, M.3
Ogiwara, A.4
Bamba, T.5
Fukusaki, E.6
-
24
-
-
84906223658
-
MRMPROBS suite for metabolomics using large-scale MRM assays
-
Tsugawa, H., Kanazawa, M., Ogiwara, A., and Arita, M. (2014). MRMPROBS suite for metabolomics using large-scale MRM assays. Bioinformatics 30, 2379-2380. doi: 10.1093/bioinformatics/btu203
-
(2014)
Bioinformatics
, vol.30
, pp. 2379-2380
-
-
Tsugawa, H.1
Kanazawa, M.2
Ogiwara, A.3
Arita, M.4
-
25
-
-
84863869467
-
Development of oxidized phosphatidylcholine isomer profiling method using supercritical fluid chromatography/tandem mass spectrometry
-
Uchikata, T., Matsubara, A., Nishiumi, S., Yoshida, M., Fukusaki, E., and Bamba, T., et al. (2012). Development of oxidized phosphatidylcholine isomer profiling method using supercritical fluid chromatography/tandem mass spectrometry. J. Chromatogr. A 1250, 205-211. doi: 10.1016/j.chroma.2012.05.083
-
(2012)
J. Chromatogr. A.
, vol.1250
, pp. 205-211
-
-
Uchikata, T.1
Matsubara, A.2
Nishiumi, S.3
Yoshida, M.4
Fukusaki, E.5
Bamba, T.6
-
26
-
-
67650896069
-
Plasma fingerprinting with GC-MS in acute coronary syndrome
-
Vallejo, M., García, A., Tuñón, J., García-Martínez, D., Angulo, S., Martin-Ventura, J. L., et al. (2009). Plasma fingerprinting with GC-MS in acute coronary syndrome. Anal. Bioanal. Chem. 394, 1517-1524. doi: 10.1007/s00216-009-2610-6
-
(2009)
Anal. Bioanal. Chem.
, vol.394
, pp. 1517-1524
-
-
Vallejo, M.1
García, A.2
Tuñón, J.3
García-Martínez, D.4
Angulo, S.5
Martin-Ventura, J.L.6
-
27
-
-
84877135739
-
Development of a lipid profiling system using reverse-phase liquid chromatography coupled to high-resolution mass spectrometry with rapid polarity switching and an automated lipid identification software
-
Yamada, T., Uchikata, T., Sakamoto, S., Yokoi, Y., Fukusaki, E., and Bamba, T., (2013). Development of a lipid profiling system using reverse-phase liquid chromatography coupled to high-resolution mass spectrometry with rapid polarity switching and an automated lipid identification software. J. Chromatogr. A 1292, 211-218. doi: 10.1016/j.chroma.2013.01.078
-
(2013)
J. Chromatogr. A.
, vol.1292
, pp. 211-218
-
-
Yamada, T.1
Uchikata, T.2
Sakamoto, S.3
Yokoi, Y.4
Fukusaki, E.5
Bamba, T.6
|