-
1
-
-
0001222027
-
A physiological analysis of the growth of oilseed rape
-
Cambridge
-
Allen, E. J., Morgan, D. G., and Ridgman, W. J. 1971. A physiological analysis of the growth of oilseed rape. J. Agric. Sci. Cambridge 77:339-341.
-
(1971)
J. Agric. Sci.
, vol.77
, pp. 339-341
-
-
Allen, E.J.1
Morgan, D.G.2
Ridgman, W.J.3
-
2
-
-
0027028335
-
Biological control in the phyllosphere
-
Andrews, J. H. 1992. Biological control in the phyllosphere. Annu. Rev. Phytopathol. 30:603-635.
-
(1992)
Annu. Rev. Phytopathol.
, vol.30
, pp. 603-635
-
-
Andrews, J.H.1
-
3
-
-
84874203270
-
Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior
-
Badri, D. V, Zolla, G., Bakker, M. G., Manter, D. K., and Vivanco, J. M. 2013. Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior. New Phytol. 198:264-273.
-
(2013)
New Phytol.
, vol.198
, pp. 264-273
-
-
Badri Zolla V D, G.1
Bakker, M.G.2
Manter, D.K.3
Vivanco, J.M.4
-
4
-
-
84872236906
-
Host genotype shapes the foliar fungal microbiome of balsam poplar (Populus balsamifera)
-
Published
-
Bálint, M., Tiffin, P., Hallstrom, B., B, O'Hara, R., Olson, M. S., Fankhauser, J. D., Piepenbring, M., and Schmitt, I. 2013. Host genotype shapes the foliar fungal microbiome of balsam poplar (Populus balsamifera). PLoS One 8:e53987. Published online.
-
(2013)
PLoS One
, vol.8
, pp. e53987
-
-
Bálint, M.1
Tiffin, P.2
Hallstrom, B.3
O'hara R, B.4
Olson, M.S.5
Fankhauser, J.D.6
Piepenbring, M.7
Schmitt, I.8
-
5
-
-
11144316138
-
Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi
-
Berg, G., Krechel, A., Ditz, M., Sikora, R. A., Ulrich, A., and Hallmann, J. 2005. Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi. FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Ecol. 51:215-229.
-
(2005)
FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Ecol.
, vol.51
, pp. 215-229
-
-
Berg, G.1
Krechel, A.2
Ditz, M.3
Sikora, R.A.4
Ulrich, A.5
Hallmann, J.6
-
6
-
-
75949108066
-
Galaxy: A Web-based genome analysis tool for experimentalists
-
Blankenberg, D., Von Kuster, G., Coraor, N., Ananda, G., Lazarus, R., Mangan, M., Nekrutenko, A., and Taylor, J. 2010. Galaxy: A Web-based genome analysis tool for experimentalists. Curr. Protocols Mol. Biol. 19. 10:1-21.
-
(2010)
Curr. Protocols Mol. Biol.
, vol.19
, Issue.10
, pp. 1-21
-
-
Blankenberg, D.1
Von Kuster, G.2
Coraor, N.3
Ananda, G.4
Lazarus, R.5
Mangan, M.6
Nekrutenko, A.7
Taylor, J.8
-
7
-
-
84874056533
-
Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana
-
Published
-
Bodenhausen, N., Horton, M. W., and Bergelson, J. 2013. Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS One 8:e56329. Published online.
-
(2013)
PLoS One
, vol.8
, pp. e56329
-
-
Bodenhausen, N.1
Horton, M.W.2
Bergelson, J.3
-
8
-
-
84871979584
-
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
-
Bokulich, N. A., Subramanian, S., Faith, J. J., Gevers, D., Gordon, J. I., Knight, R., Mills, D. A., and Caporaso, J. G. 2013. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat. Methods 10:57-59.
-
(2013)
Nat. Methods
, vol.10
, pp. 57-59
-
-
Bokulich, N.A.1
Subramanian, S.2
Faith, J.J.3
Gevers, D.4
Gordon, J.I.5
Knight, R.6
Mills, D.A.7
Caporaso, J.G.8
-
9
-
-
0007537061
-
Development of soilseed rape buds, flowers and pods in vitro
-
Bouttier, C., and Morgan, D. G. 1992. Development of soilseed rape buds, flowers and pods in vitro. J. Exp. Bot. 43:1089-1096.
-
(1992)
J. Exp. Bot.
, vol.43
, pp. 1089-1096
-
-
Bouttier, C.1
Morgan, D.G.2
-
10
-
-
84864452660
-
TaxMan: A server to trim rRNA reference databases and inspect taxonomic coverage
-
Brandt, B. W., Bonder, M. J., Huse, S. M., and Zaura, E. 2012. TaxMan: A server to trim rRNA reference databases and inspect taxonomic coverage. Nucleic Acids Res. 40:82-87.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 82-87
-
-
Brandt, B.W.1
Bonder, M.J.2
Huse, S.M.3
Zaura, E.4
-
11
-
-
84864460264
-
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
-
Bulgarelli, D., Rott, M., Schlaeppi, K., Ver Loren van Themaat, E., Ahmadinejad, N., Assenza, F., Rauf, P., Huettel, B., Reinhardt, R., Schmelzer, E., Peplies, J., Gloeckner, F. O., Amann, R., Eickhorst, T., and Schulze-Lefert, P. 2012. Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. Nature 488:91-95.
-
(2012)
Nature
, vol.488
, pp. 91-95
-
-
Bulgarelli, D.1
Rott, M.2
Schlaeppi, K.3
Ver Loren Van Themaat, E.4
Ahmadinejad, N.5
Assenza, F.6
Rauf, P.7
Huettel, B.8
Reinhardt, R.9
Schmelzer, E.10
Peplies, J.11
Gloeckner, F.O.12
Amann, R.13
Eickhorst, T.14
Schulze-Lefert, P.15
-
12
-
-
79955133206
-
Comprehensive list of names of plant pathogenic bacteria, 1980-2007
-
Bull, C. T., Boer, S. H. De, Denny, T. P., Firrao, G., Saux, M. F., Saddler, G. S., Scortichini, M., Stead, D. E., and Takikawa, Y. 2010. Comprehensive list of names of plant pathogenic bacteria, 1980-2007. J. Plant Pathol. 92:551-592.
-
(2010)
J. Plant Pathol.
, vol.92
, pp. 551-592
-
-
Bull, C.T.1
Boer De Denny H S, T.P.2
Firrao, G.3
Saux, M.F.4
Saddler, G.S.5
Scortichini, M.6
Stead, D.E.7
Takikawa, Y.8
-
13
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
Caporaso, J. G., Bittinger, K., Bushman, F. D., DeSantis, T. Z., Andersen, G. L., and Knight, R. 2010. PyNAST: A flexible tool for aligning sequences to a template alignment. Bioinformatics 26:266-267.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
Desantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
14
-
-
34147182303
-
-
NIH Public Access
-
Chakravorty, S., Helb, D., Burday, M., and Connell, N. 2008. NIH Public Access 69:330-339.
-
(2008)
, vol.69
, pp. 330-339
-
-
Chakravorty, S.1
Helb, D.2
Burday, M.3
Connell, N.4
-
15
-
-
0034964968
-
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L
-
Chelius, M. K., and Triplett, E. W. 2001. The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L. Microb. Ecol. 41:252-263.
-
(2001)
Microb. Ecol.
, vol.41
, pp. 252-263
-
-
Chelius, M.K.1
Triplett, E.W.2
-
16
-
-
25144473901
-
Use of plant growthpromoting bacteria for biocontrol of plant diseases: Principles, mechanisms of action, and future prospects
-
Compant, S., Duffy, B., Nowak, J., and Cle, C. 2005. Use of plant growthpromoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl. Environ. Microbiol. 71:4951-4959.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 4951-4959
-
-
Compant, S.1
Duffy, B.2
Nowak, J.3
Cle, C.4
-
17
-
-
84874389235
-
Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris)
-
De Oliveira Costa, L., de Queiroz, M., Borges, A., de Moraes, C., and de Araujo, E. 2012. Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris). Braz. J. Microbiol. 43:1562-1575.
-
(2012)
Braz. J. Microbiol.
, vol.43
, pp. 1562-1575
-
-
De Oliveira Costa, L.1
De Queiroz, M.2
Borges, A.3
De Moraes, C.4
De Araujo, E.5
-
18
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., Huber, T., Dalevi, D., Hu, P., and Andersen, G. L. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72:5069-5072.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5069-5072
-
-
Desantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
19
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
20
-
-
83155163706
-
Geographical location determines the population structure in phyllosphere microbial communities of a salt-excreting desert tree
-
Finkel, O. M., Burch, A. Y., Lindow, S. E., Post, A. F., and Belkin, S. 2011. Geographical location determines the population structure in phyllosphere microbial communities of a salt-excreting desert tree. Appl. Environ. Microbiol. 77:7647-7655.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 7647-7655
-
-
Finkel, O.M.1
Burch, A.Y.2
Lindow, S.E.3
Post, A.F.4
Belkin, S.5
-
21
-
-
25844449770
-
-
Lab. Press
-
Giardine, B., Riemer, C., Hardison, R. C., Burhans, R., Shah, P., Zhang, Y., Blankenberg, D., Albert, I., Miller, W., Kent, W. J., and Nekrutenko, A. 2005. Galaxy: A platform for interactive large-scale genome analysis. Cold Spring Harb. Lab. Press 15:1451-1455.
-
(2005)
Galaxy: A Platform for Interactive Large-scale Genome Analysis Cold Spring Harb
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Shah, P.5
Zhang, Y.6
Blankenberg, D.7
Albert, I.8
Miller, W.9
Kent, W.J.10
Nekrutenko, A.11
-
22
-
-
37049039428
-
Assessing data mining results via swap randomization
-
Gionis, A., and Mannila, H. 2007. Assessing data mining results via swap randomization. ACM Trans. Knowl. Discov. Data 1:1401-1432.
-
(2007)
ACM Trans. Knowl. Discov. Data
, vol.1
, pp. 1401-1432
-
-
Gionis, A.1
Mannila, H.2
-
23
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A., and Taylor, J. 2010. Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11:R86.
-
(2010)
Genome Biol.
, vol.11
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
24
-
-
0040293366
-
A single locus determines sensitivity to bacterial flagellin in Arabidopsis thaliana
-
Gomez-Gomez, L., Felix, G., and Boller, T. 1999. A single locus determines sensitivity to bacterial flagellin in Arabidopsis thaliana. Plant J. 18:277-284. .
-
(1999)
Plant J.
, vol.18
, pp. 277-284
-
-
Gomez-Gomez, L.1
Felix, G.2
Boller, T.3
-
25
-
-
84984095621
-
Soybean leaf pubescence affects aphid vector transmission and field spread of soybean mosaic virus
-
Gunasinghe, U. B., Irwin, M. E., and Kampmeier, G. E. 1988. Soybean leaf pubescence affects aphid vector transmission and field spread of soybean mosaic virus. Ann. Appl. Biol. 112:259-272.
-
(1988)
Ann. Appl. Biol.
, vol.112
, pp. 259-272
-
-
Gunasinghe, U.B.1
Irwin, M.E.2
Kampmeier, G.E.3
-
26
-
-
84857149042
-
Dynamics of seed-borne rice endophytes on early plant growth stages
-
Published
-
Hardoim, P. R., Hardoim, C. C. P., van Overbeek, L. S., and van Elsas, J. D. 2011. Dynamics of seed-borne rice endophytes on early plant growth stages. PLoS One 7:e30438. Published online.
-
(2011)
PLoS One
, vol.7
, pp. e30438
-
-
Hardoim, P.R.1
Hardoim, C.C.P.2
Van Overbeek, L.S.3
Van Elsas, J.D.4
-
27
-
-
79958211515
-
Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system
-
Innerebner, G., Knief, C., and Vorholt, J. A. 2011. Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system. Appl. Environ. Microbiol. 77:3202-3210.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 3202-3210
-
-
Innerebner, G.1
Knief, C.2
Vorholt, J.A.3
-
28
-
-
78650677462
-
Annual and seasonal variation in the phyllosphere bacterial community associated with leaves of the southern Magnolia (Magnolia grandiflora)
-
Jackson, C. R., and Denney, W. C. 2010. Annual and seasonal variation in the phyllosphere bacterial community associated with leaves of the southern Magnolia (Magnolia grandiflora). Microb. Ecol. 61:113-122.
-
(2010)
Microb. Ecol.
, vol.61
, pp. 113-122
-
-
Jackson, C.R.1
Denney, W.C.2
-
29
-
-
0000329090
-
Plant pubescence: An ecological perspective
-
Johnson, H. B. 1975. Plant pubescence: An ecological perspective. Bot. Rev. 41:233-258. 2012.
-
(1975)
Bot. Rev.
, vol.41
, Issue.2012
, pp. 233-258
-
-
Johnson, H.B.1
-
30
-
-
84858007621
-
Distinctive phyllosphere bacterial communities in tropical trees
-
Kim, M., Singh, D., Lai-Hoe, A., Go, R., Abdul Rahim, R., Ainuddin, A. N., Chun, J., and Adams, J. M. 2012. Distinctive phyllosphere bacterial communities in tropical trees. Microb. Ecol. 63:674-681.
-
(2012)
Microb. Ecol.
, vol.63
, pp. 674-681
-
-
Kim, M.1
Singh, D.2
Lai-Hoe, A.3
Go, R.4
Abdul Rahim, R.5
Ainuddin, A.N.6
Chun, J.7
Adams, J.M.8
-
31
-
-
77952672792
-
Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere
-
Knief, C., Ramette, A., Frances, L., Carlos, A.-B., and Vorholt, J. A. 2010. Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. ISME J. 4:719-728.
-
(2010)
ISME J.
, vol.4
, pp. 719-728
-
-
Knief, C.1
Ramette, A.2
Frances, L.3
Carlos, A.-B.4
Vorholt, J.A.5
-
32
-
-
77957672841
-
Microbial community resemblance methods differ in their ability to detect biologically relevant patterns
-
Kuczynski, J., Liu, Z., Lozupone, C., McDonald, D., Fierer, N., and Knight, R. 2010. Microbial community resemblance methods differ in their ability to detect biologically relevant patterns. Nat. Methods 7:813-819.
-
(2010)
Nat. Methods
, vol.7
, pp. 813-819
-
-
Kuczynski, J.1
Liu, Z.2
Lozupone, C.3
McDonald, D.4
Fierer, N.5
Knight, R.6
-
33
-
-
10044231395
-
Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion
-
Kuklinsky-Sobral, J., Araújo, W. L., Mendes, R., Geraldi, I. O., Pizzirani-Kleiner, A. A., Azevedo, J. L., Júlia, K.-S., and A, Pizzirani-Kleiner, A. 2004. Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion. Environ. Microbiol. 6:1244-1251.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 1244-1251
-
-
Kuklinsky-Sobral, J.1
Araújo, W.L.2
Mendes, R.3
Geraldi, I.O.4
Pizzirani-Kleiner, A.A.5
Azevedo, J.L.6
Júlia, K.-S.7
Pizzirani-Kleiner A, A.8
-
34
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille, M. G. I., Zaneveld, J., Caporaso, J. G., McDonald, D., Knights, D., Reyes, J. A., Clemente, J. C., Burkepile, D. E., Vega Thurber, R. L., Knight, R., Beiko, R. G., and Huttenhower, C. 2013. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 31:814-821.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 814-821
-
-
Langille, M.G.I.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
Clemente, J.C.7
Burkepile, D.E.8
Vega Thurber, R.L.9
Knight, R.10
Beiko, R.G.11
Huttenhower, C.12
-
36
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone, C., and Knight, R. 2005. UniFrac: A new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71:8228-8235.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
37
-
-
78751575501
-
UniFrac: An effective distance metric for microbial community comparison
-
Lozupone, C., Lladser, M. E., Knights, D., Stombaugh, J., and Knight, R. 2011. UniFrac: An effective distance metric for microbial community comparison. ISME J. 5:169-172.
-
(2011)
ISME J.
, vol.5
, pp. 169-172
-
-
Lozupone, C.1
Lladser, M.E.2
Knights, D.3
Stombaugh, J.4
Knight, R.5
-
38
-
-
33749007386
-
Plant growth-promoting Methylobacterium induces defense responses in groundnut (Arachis hypogaea L.)compared with rot pathogens
-
Madhaiyan, M., Suresh Reddy, B. V, Anandham, R., Senthilkumar, M., Poonguzhali, S., Sundaram, S. P., and Sa, T. 2006. Plant growth-promoting Methylobacterium induces defense responses in groundnut (Arachis hypogaea L.) compared with rot pathogens. Curr. Microbiol. 53:270-276.
-
(2006)
Curr. Microbiol.
, vol.53
, pp. 270-276
-
-
Madhaiyan, M.1
Suresh, V.2
Reddy, B.3
Anandham, R.4
Senthilkumar, M.5
Poonguzhali, S.6
Sundaram, S.P.7
Sa, T.8
-
39
-
-
0031467522
-
Variability in the highly virulent type of Leptosphaeria maculans within and between oilseed rape fields
-
Mahuku, G. S., Goodwin, P. H., Hall, R., and Hsiang, T. 1997. Variability in the highly virulent type of Leptosphaeria maculans within and between oilseed rape fields. Can. J. Bot. 75:1485-1492.
-
(1997)
Can. J. Bot.
, vol.75
, pp. 1485-1492
-
-
Mahuku, G.S.1
Goodwin, P.H.2
Hall, R.3
Hsiang, T.4
-
40
-
-
84903362470
-
Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities
-
Maignien, L. L., DeForce, E. A., Chafee, M. E., Eren, A. M., and Simmons, S. L. 2014. Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities. MBio 5:e00682-13.
-
(2014)
MBio
, vol.5
, pp. e00682-e00713
-
-
Maignien, L.L.1
Deforce, E.A.2
Chafee, M.E.3
Eren, A.M.4
Simmons, S.L.5
-
41
-
-
84923134722
-
-
Published
-
Published online. Maughan, H., Wang, P. W., Diaz Caballero, J., Fung, P., Gong, Y., Donaldson, S. L., Yuan, L., Keshavjee, S., Zhang, Y., Yau, Y. C. W., Waters, V. J., Tullis, D. E., Hwang, D. M., and Guttman, D. S. 2012.
-
(2012)
-
-
Maughan, H.1
Wang, P.W.2
Diaz Caballero, J.3
Fung, P.4
Gong, Y.5
Donaldson, S.L.6
Yuan, L.7
Keshavjee, S.8
Zhang, Y.9
Yau, Y.C.W.10
Waters, V.J.11
Tullis, D.E.12
Hwang, D.M.13
Guttman, D.S.14
-
42
-
-
84867026341
-
Analysis of the cystic fibrosis lung microbiota via serial Illumina sequencing of bacterial 16S rRNA hypervariable regions
-
Published
-
Analysis of the cystic fibrosis lung microbiota via serial Illumina sequencing of bacterial 16S rRNA hypervariable regions. PLoS One 7:e45791. Published online.
-
PLoS One
, vol.7
, pp. e45791
-
-
-
43
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald, D., Price, M. N., Goodrich, J., Nawrocki, E. P., DeSantis, T. Z., Probst, A., Andersen, G. L., Knight, R., and Hugenholtz, P. 2012. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 6:610-618.
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
Desantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
44
-
-
84876259793
-
Diversity and heritability of the maize rhizosphere microbiome under field conditions
-
Peiffer, J. A., Spor, A., Koren, O., Jin, Z., Green, S., and Dangl, J. L. 2013. Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc. Natl. Acad. Sci. U. S. A. 110:6548-6553.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 6548-6553
-
-
Peiffer, J.A.1
Spor, A.2
Koren, O.3
Jin, Z.4
Green, S.5
Dangl, J.L.6
-
45
-
-
84901374831
-
Resilience of the natural phyllosphere microbiota of the grapevine to chemical and biological pesticides
-
Perazzolli, M., Antonielli, L., Storari, M., Storari, M., Puopolo, G., Pancher, M., Giovannini, O., Pindo, M., and Pertot, I. 2014. Resilience of the natural phyllosphere microbiota of the grapevine to chemical and biological pesticides. Appl. Environ. Microbiol. 80:3585-9356.
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 3585-9356
-
-
Perazzolli, M.1
Antonielli, L.2
Storari, M.3
Storari, M.4
Puopolo, G.5
Pancher, M.6
Giovannini, O.7
Pindo, M.8
Pertot, I.9
-
46
-
-
67649327176
-
FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
-
Price, M. N., Dehal, P. S., and Arkin, A. P. 2009. FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. Evol. 26:1641-1650.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
47
-
-
84858309325
-
Isolation and Characterization of nodule-associated Exiguobacterium sp from the root nodules of fenugreek (Trigonella foenum-graecum) and their possible role in plant growth promotion
-
Rajendran, G., Patel, M. H., and Joshi, S. J. 2012. Isolation and Characterization of nodule-associated Exiguobacterium sp. from the root nodules of fenugreek (Trigonella foenum-graecum) and their possible role in plant growth promotion. Int. J. Microbiol. 2012:e693982.
-
(2012)
Int. J. Microbiol
, Issue.2012
, pp. e693982
-
-
Rajendran, G.1
Patel, M.H.2
Joshi, S.J.3
-
48
-
-
84867745648
-
Leaf microbiota in an agroecosystem: Spatiotemporal variation in bacterial community composition on field-grown lettuce
-
Rastogi, G., Sbodio, A., Tech, J. J., Suslow, T. V, Coaker, G. L., and Leveau, J. H. J. 2012. Leaf microbiota in an agroecosystem: Spatiotemporal variation in bacterial community composition on field-grown lettuce. ISME J. 6:1812-1822.
-
(2012)
ISME J.
, vol.6
, pp. 1812-1822
-
-
Rastogi, G.1
Sbodio, A.2
Tech, J.J.3
Suslow, V.T.4
Coaker, G.L.5
Leveau, J.H.J.6
-
49
-
-
84885481609
-
New insights into the structure and function of phyllosphere microbiota through highthroughput molecular approaches
-
Rastogi, G., Coaker, G. L., and Leveau, J. H. 2013. New insights into the structure and function of phyllosphere microbiota through highthroughput molecular approaches. FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Lett. 348:1-10.
-
(2013)
FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Lett.
, vol.348
, pp. 1-10
-
-
Rastogi, G.1
Coaker, G.L.2
Leveau, J.H.3
-
50
-
-
67649223259
-
Bacterial succession on the leaf surface: A novel system for studying successional dynamics
-
Redford, A. J., and Fierer, N. 2009. Bacterial succession on the leaf surface: A novel system for studying successional dynamics. Microb. Ecol. 58:189-198.
-
(2009)
Microb. Ecol.
, vol.58
, pp. 189-198
-
-
Redford, A.J.1
Fierer, N.2
-
51
-
-
77957885485
-
The ecology of the phyllosphere: Geographic and phylogenetic variability in the distribution of bacteria on tree leaves
-
Redford, A. J., Bowers, R. M., Knight, R., Linhart, Y., and Fierer, N. 2010. The ecology of the phyllosphere: Geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environ. Microbiol. 12:2885-2893.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 2885-2893
-
-
Redford, A.J.1
Bowers, R.M.2
Knight, R.3
Linhart, Y.4
Fierer, N.5
-
52
-
-
33746639717
-
Toward a census of bacteria in soil
-
Published
-
Schloss, P. D., and Handelsman, J. 2006. Toward a census of bacteria in soil. PLoS Comput. Biol. 2:e92. Published online.
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. e92
-
-
Schloss, P.D.1
Handelsman, J.2
-
53
-
-
72949107142
-
Introducing Mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., Sahl, J. W., Stres, B., Thallinger, G. G., Van Horn, D. J., and Weber, C. F. 2009. Introducing Mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
54
-
-
84880069357
-
Unexpected diversity during community succession in the apple flower microbiome
-
Shade, A., McManus, P. S., and Handelsman, J. 2013. Unexpected diversity during community succession in the apple flower microbiome. MBio 4:602-612.
-
(2013)
MBio
, vol.4
, pp. 602-612
-
-
Shade, A.1
McManus, P.S.2
Handelsman, J.3
-
55
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov, R. L., Galperin, M. Y., Natale, D. A, and Koonin, E. V. 2000. The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28:33-36.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
56
-
-
0005924596
-
Graph clustering by flow simulation
-
Ph. D. thesis, University of Utrecht, The Netherlands
-
Van Dongen, S. 2000. Graph clustering by flow simulation. Ph. D. thesis, University of Utrecht, The Netherlands.
-
(2000)
Nat. Rev. Microbiol.
-
-
Van Dongen, S.1
-
58
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73:5261-5267.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
59
-
-
70350527180
-
Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
-
Published
-
Wang, Y., and Qian, P.-Y. 2009. Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS One 4:e7401. Published online.
-
(2009)
PLoS One
, vol.4
, pp. e7401
-
-
Wang, Y.1
Qian, P.-Y.2
-
60
-
-
77949807883
-
Reactions of Canadian short-season soybean cultivars to three races of Phytophthora sojae
-
Zhang, S. Z., Xue, A. G., Zhang, J. X., Cober, E., Anderson, T. R., Poysa, V., and Rajcan, I. 2010. Reactions of Canadian short-season soybean cultivars to three races of Phytophthora sojae. Can. J. Plant Sci. 90:207-210.
-
(2010)
Can. J. Plant Sci.
, vol.90
, pp. 207-210
-
-
Zhang, S.Z.1
Xue, A.G.2
Zhang, J.X.3
Cober, E.4
Anderson, T.R.5
Poysa, V.6
Rajcan, I.7
|