Automatic indexing of specialized documents: Using generic vs. domain-specific document representations

ACL 2007 - Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing

Volumn , Issue , 2007, Pages 183-190

  Névéol, Aurélie ^a   Mork, James G ^a   Aronson, Alan R ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC INDEXING; TRANSLATION (LANGUAGES); WORD PROCESSING;

BIOMEDICAL DOMAIN; DOCUMENT REPRESENTATION; ELECTRONIC DATABASE; ELECTRONIC DOCUMENT; GENERIC REPRESENTATION; INFORMATION SOURCES; NOVEL APPLICATIONS; PRECISION AND RECALL;

INDEXING (OF INFORMATION);

EID: 84923104854     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (19)

1. Alan R. Aronson, Olivier Bodenreider, H. Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch and W. John Wilbur. 2000. The NLM Indexing Initiative. Proceedings of the Annual American Medical Informatics Association Symposium. (AMIA 2000): 17-21.
2. Alan R. Aronson. 2001. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. Proceedings of the Annual AMIA Symposium. (AMIA 2001):17-21.
3. Alan R. Aronson, James G. Mork, Cliff W. Gay, Susanne M. Humphrey and William J. Rogers. 2004. The NLM Indexing Initiative's Medical Text Indexer. Proceedings of Medinfo 2004: 268-72.
4. Kate Byrne and Ewan Klein. 2003. Image Retrieval using Natural Language and Content-Based techniques. In Arjen P. de Vries, ed. Proceedings of the 4th Dutch-Belgian Information Retrieval Workshop (DIR 2003):57-62.
5. Scott Deerwester, Susan Dumais, Georges Furnas, Thomas Landauer and Richard Harshman. 1990. Indexing by latent semantic analysis. Journal of American Society for Information Science, 6 (41):391-407.
6. Mark E. Funk, Carolyn A. Reid and Leon S. McGoogan. 1983. Indexing consistency in MEDLINE. Bull. Med. Libr. Assoc. 71(2):176-183.
7. Susanne M. Humphrey. 1999. Automatic indexing of documents from journal descriptors: a preliminary investigation. J Am Soc Inf Sci Technol. 50(8):661-674
8. Christian Jacquemin and Evelyne Tzoukermann. 1999. NLP for term variant extraction: Synergy of morphology, lexicon, and syntax. In T. Strzalkowski (Ed.), Natural language information retrieval (p. 25-74). Boston, MA: Kluwer.
9. Won Kim, Alan R. Aronson and W. John Wilbur. 2001. Automatic MeSH term assignment and quality assessment. Proceedings of the Annual AMIA Symposium: 319-23.
10. Ying Liu, Martin Brandon, Shamkant Navathe, Ray Dingledine and Brian J. Ciliax. 2004. Text mining functional keywords associated with genes. Proceedings of MEDINFO 2004: 292-296
11. Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky and Jacques Cor-beil. 2001. Use of keyword hierarchies to interpret gene expression patterns. In: Bioinformatics 17(4):319-326
12. Adeline Nazarenko and Touria Ait El Mekki 2005. Building back-of-the-book indexes. In: Terminology 11(1):199–224
13. Aurélie Névéol, Kelly Zeng, Olivier Bodenreider. 2006. Besides precision & recall: Exploring alternative approaches to evaluating an automatic indexing tool for MEDLINE. Proceedings of the Annual AMIA Symposium: 589-93.
14. Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, Thomas C. Rindflesch and Alan R Aronson. 2007. Multiple approaches to fine-grained indexing of the biomedical literature. Proceedings of the 12th Pacific Symposium on Biocomputing. 12:292-303
15. James Rhodes, Stephen Boyer, Jeffrey Kreulen, Ying Chen, Patricia Ordonez. 2007. Mining Patents Using Molecular Similarity Search. Proceedings of the 12th Pacific Symposium on Biocomputing. 12:304-315
16. Thomas C. Rindflesch and Marcelo Fiszman. 2003. The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. J Biomed Inform. 36(6), 462-77
17. Gerald Salton. 1989. Automatic text processing: The transformation, analysis, and retrieval of information by computer. Reading, MA: Addison-Wesley.
18. Karen Sparck-Jones, Steve Walker and Stephen E. Robertson. 2000. A probalistic model of information retrieval: development and comparative experiments (part 1). Information Processing and Management, 36(3):779-808.
19. Lorraine Tanabe and W. John Wilbur. 2002. Tagging gene and protein names in biomedical text. Bioinformatics. 2002 Aug;18(8):1124-32.