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Volumn 11, Issue 1, 2015, Pages

Deciphering preferential interactions within supramolecular protein complexes: The proteasome case

Author keywords

affinity purification; correlation profiling; label free quantitative proteomics; mass spectrometry

Indexed keywords

GAMMA INTERFERON; GLYCEROL; PROTEASOME;

EID: 84922933771     PISSN: None     EISSN: 17444292     Source Type: Journal    
DOI: 10.15252/msb.20145497     Document Type: Article
Times cited : (66)

References (70)
  • 1
    • 0346874342 scopus 로고    scopus 로고
    • Proteomic characterization of the human centrosome by protein correlation profiling
    • Andersen JS, Wilkinson CJ, Mayor T, Mortensen P, Nigg EA, Mann M, (2003) Proteomic characterization of the human centrosome by protein correlation profiling. Nature 426: 570-574
    • (2003) Nature , vol.426 , pp. 570-574
    • Andersen, J.S.1    Wilkinson, C.J.2    Mayor, T.3    Mortensen, P.4    Nigg, E.A.5    Mann, M.6
  • 3
    • 84875258216 scopus 로고    scopus 로고
    • The immunoproteasome in antigen processing and other immunological functions
    • Basler M, Kirk CJ, Groettrup M, (2013) The immunoproteasome in antigen processing and other immunological functions. Curr Opin Immunol 25: 74-80
    • (2013) Curr Opin Immunol , vol.25 , pp. 74-80
    • Basler, M.1    Kirk, C.J.2    Groettrup, M.3
  • 7
    • 80051736289 scopus 로고    scopus 로고
    • Proteomics to study the diversity and dynamics of proteasome complexes: From fundamentals to the clinic
    • Bousquet-Dubouch MP, Fabre B, Monsarrat B, Burlet-Schiltz O, (2011) Proteomics to study the diversity and dynamics of proteasome complexes: from fundamentals to the clinic. Expert Rev Proteomics 8: 459-481
    • (2011) Expert Rev Proteomics , vol.8 , pp. 459-481
    • Bousquet-Dubouch, M.P.1    Fabre, B.2    Monsarrat, B.3    Burlet-Schiltz, O.4
  • 8
    • 34848925460 scopus 로고    scopus 로고
    • Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: Application to the proteomics study of membrane proteins from primary human endothelial cells
    • Bouyssie D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B, (2007) Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells. Mol Cell Proteomics 6: 1621-1637
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1621-1637
    • Bouyssie, D.1    Gonzalez De Peredo, A.2    Mouton, E.3    Albigot, R.4    Roussel, L.5    Ortega, N.6    Cayrol, C.7    Burlet-Schiltz, O.8    Girard, J.P.9    Monsarrat, B.10
  • 9
    • 84922220547 scopus 로고    scopus 로고
    • PA28alphabeta: The enigmatic magic ring of the proteasome?
    • Cascio P, (2014) PA28alphabeta: the enigmatic magic ring of the proteasome? Biomolecules 4: 566-584
    • (2014) Biomolecules , vol.4 , pp. 566-584
    • Cascio, P.1
  • 11
    • 77953994414 scopus 로고    scopus 로고
    • Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data
    • Choi H, Kim S, Gingras AC, Nesvizhskii AI, (2010) Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data. Mol Syst Biol 6: 385
    • (2010) Mol Syst Biol , vol.6 , pp. 385
    • Choi, H.1    Kim, S.2    Gingras, A.C.3    Nesvizhskii, A.I.4
  • 12
    • 0034634389 scopus 로고    scopus 로고
    • Different proteasome subtypes in a single tissue exhibit different enzymatic properties
    • Dahlmann B, Ruppert T, Kuehn L, Merforth S, Kloetzel PM, (2000) Different proteasome subtypes in a single tissue exhibit different enzymatic properties. J Mol Biol 303: 643-653
    • (2000) J Mol Biol , vol.303 , pp. 643-653
    • Dahlmann, B.1    Ruppert, T.2    Kuehn, L.3    Merforth, S.4    Kloetzel, P.M.5
  • 14
    • 34247522791 scopus 로고    scopus 로고
    • Exploring proteasome complexes by proteomic approaches
    • Drews O, Zong C, Ping P, (2007) Exploring proteasome complexes by proteomic approaches. Proteomics 7: 1047-1058
    • (2007) Proteomics , vol.7 , pp. 1047-1058
    • Drews, O.1    Zong, C.2    Ping, P.3
  • 15
    • 84874620572 scopus 로고    scopus 로고
    • Subcellular distribution and dynamics of active proteasome complexes unraveled by a workflow combining in vivo complex cross-linking and quantitative proteomics
    • Fabre B, Lambour T, Delobel J, Amalric F, Monsarrat B, Burlet-Schiltz O, Bousquet-Dubouch MP, (2013) Subcellular distribution and dynamics of active proteasome complexes unraveled by a workflow combining in vivo complex cross-linking and quantitative proteomics. Mol Cell Proteomics 12: 687-699
    • (2013) Mol Cell Proteomics , vol.12 , pp. 687-699
    • Fabre, B.1    Lambour, T.2    Delobel, J.3    Amalric, F.4    Monsarrat, B.5    Burlet-Schiltz, O.6    Bousquet-Dubouch, M.P.7
  • 17
    • 84902075951 scopus 로고    scopus 로고
    • Correction to "label-free quantitative proteomics reveals the dynamics of proteasome complexes composition and stoichiometry in a wide range of human cell lines"
    • Fabre B, Lambour T, Garrigues L, Ducoux-Petit M, Amalric F, Monsarrat B, Burlet-Schiltz O, Bousquet-Dubouch MP, (2014b) Correction to "label-free quantitative proteomics reveals the dynamics of proteasome complexes composition and stoichiometry in a wide range of human cell lines". J Proteome Res 13: 6197-6198
    • (2014) J Proteome Res , vol.13 , pp. 6197-6198
    • Fabre, B.1    Lambour, T.2    Garrigues, L.3    Ducoux-Petit, M.4    Amalric, F.5    Monsarrat, B.6    Burlet-Schiltz, O.7    Bousquet-Dubouch, M.P.8
  • 18
    • 84859702750 scopus 로고    scopus 로고
    • Molecular model of the human 26S proteasome
    • da Fonseca PC, He J, Morris EP, (2012) Molecular model of the human 26S proteasome. Mol Cell 46: 54-66
    • (2012) Mol Cell , vol.46 , pp. 54-66
    • Da Fonseca, P.C.1    He, J.2    Morris, E.P.3
  • 23
    • 58549085778 scopus 로고    scopus 로고
    • An integrated workflow for charting the human interaction proteome: Insights into the PP2A system
    • Glatter T, Wepf A, Aebersold R, Gstaiger M, (2009) An integrated workflow for charting the human interaction proteome: insights into the PP2A system. Mol Syst Biol 5: 237
    • (2009) Mol Syst Biol , vol.5 , pp. 237
    • Glatter, T.1    Wepf, A.2    Aebersold, R.3    Gstaiger, M.4
  • 24
    • 0036083396 scopus 로고    scopus 로고
    • The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction
    • Glickman MH, Ciechanover A, (2002) The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction. Physiol Rev 82: 373-428
    • (2002) Physiol Rev , vol.82 , pp. 373-428
    • Glickman, M.H.1    Ciechanover, A.2
  • 26
    • 72949103056 scopus 로고    scopus 로고
    • Proteasomes in immune cells: More than peptide producers?
    • Groettrup M, Kirk CJ, Basler M, (2010) Proteasomes in immune cells: more than peptide producers? Nat Rev Immunol 10: 73-78
    • (2010) Nat Rev Immunol , vol.10 , pp. 73-78
    • Groettrup, M.1    Kirk, C.J.2    Basler, M.3
  • 32
    • 84902098137 scopus 로고    scopus 로고
    • Characterizing the dynamics of proteasome complexes by proteomics approaches
    • Kaake RM, Kao A, Yu C, Huang L, (2014) Characterizing the dynamics of proteasome complexes by proteomics approaches. Antioxid Redox Signal 21: 2444-2456
    • (2014) Antioxid Redox Signal , vol.21 , pp. 2444-2456
    • Kaake, R.M.1    Kao, A.2    Yu, C.3    Huang, L.4
  • 35
    • 52049116958 scopus 로고    scopus 로고
    • Structure of a conserved dimerization domain within the F-box protein Fbxo7 and the PI31 proteasome inhibitor
    • Kirk R, Laman H, Knowles PP, Murray-Rust J, Lomonosov M, el Meziane K, McDonald NQ, (2008) Structure of a conserved dimerization domain within the F-box protein Fbxo7 and the PI31 proteasome inhibitor. J Biol Chem 283: 22325-22335
    • (2008) J Biol Chem , vol.283 , pp. 22325-22335
    • Kirk, R.1    Laman, H.2    Knowles, P.P.3    Murray-Rust, J.4    Lomonosov, M.5    El Meziane, K.6    McDonald, N.Q.7
  • 36
    • 84890669750 scopus 로고    scopus 로고
    • Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics
    • Kirkwood KJ, Ahmad Y, Larance M, Lamond AI, (2013) Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. Mol Cell Proteomics 12: 3851-3873
    • (2013) Mol Cell Proteomics , vol.12 , pp. 3851-3873
    • Kirkwood, K.J.1    Ahmad, Y.2    Larance, M.3    Lamond, A.I.4
  • 37
    • 84876916040 scopus 로고    scopus 로고
    • Structural biology of the proteasome
    • Kish-Trier E, Hill CP, (2013) Structural biology of the proteasome. Annu Rev Biophys 42: 29-49
    • (2013) Annu Rev Biophys , vol.42 , pp. 29-49
    • Kish-Trier, E.1    Hill, C.P.2
  • 38
    • 34548566134 scopus 로고    scopus 로고
    • Intermediate-type 20 S proteasomes in HeLa cells: "asymmetric" subunit composition, diversity and adaptation
    • Klare N, Seeger M, Janek K, Jungblut PR, Dahlmann B, (2007) Intermediate-type 20 S proteasomes in HeLa cells: "asymmetric" subunit composition, diversity and adaptation. J Mol Biol 373: 1-10
    • (2007) J Mol Biol , vol.373 , pp. 1-10
    • Klare, N.1    Seeger, M.2    Janek, K.3    Jungblut, P.R.4    Dahlmann, B.5
  • 39
  • 40
    • 84866134921 scopus 로고    scopus 로고
    • A high-throughput approach for measuring temporal changes in the interactome
    • Kristensen AR, Gsponer J, Foster LJ, (2012) A high-throughput approach for measuring temporal changes in the interactome. Nat Methods 9: 907-909
    • (2012) Nat Methods , vol.9 , pp. 907-909
    • Kristensen, A.R.1    Gsponer, J.2    Foster, L.J.3
  • 44
    • 80052386730 scopus 로고    scopus 로고
    • Enhancement of proteasomal function protects against cardiac proteinopathy and ischemia/reperfusion injury in mice
    • Li J, Horak KM, Su H, Sanbe A, Robbins J, Wang X, (2011a) Enhancement of proteasomal function protects against cardiac proteinopathy and ischemia/reperfusion injury in mice. J Clin Invest 121: 3689-3700
    • (2011) J Clin Invest , vol.121 , pp. 3689-3700
    • Li, J.1    Horak, K.M.2    Su, H.3    Sanbe, A.4    Robbins, J.5    Wang, X.6
  • 45
    • 79954590790 scopus 로고    scopus 로고
    • Enhancement of proteasome function by PA28α overexpression protects against oxidative stress
    • Li J, Powell SR, Wang X, (2011b) Enhancement of proteasome function by PA28α overexpression protects against oxidative stress. Faseb J 25: 883-893
    • (2011) Faseb J , vol.25 , pp. 883-893
    • Li, J.1    Powell, S.R.2    Wang, X.3
  • 46
    • 84903475943 scopus 로고    scopus 로고
    • Molecular and cellular roles of PI31 (PSMF1) in regulation of proteasome function
    • Li X, Thompson D, Kumar B, Demartino GN, (2014) Molecular and cellular roles of PI31 (PSMF1) in regulation of proteasome function. J Biol Chem 289: 17392-17405
    • (2014) J Biol Chem , vol.289 , pp. 17392-17405
    • Li, X.1    Thompson, D.2    Kumar, B.3    Demartino, G.N.4
  • 49
    • 0034327510 scopus 로고    scopus 로고
    • Catalytic activities of the 20 S proteasome, a multicatalytic proteinase complex
    • Orlowski M, Wilk S, (2000) Catalytic activities of the 20 S proteasome, a multicatalytic proteinase complex. Arch Biochem Biophys 383: 1-16
    • (2000) Arch Biochem Biophys , vol.383 , pp. 1-16
    • Orlowski, M.1    Wilk, S.2
  • 50
    • 68149164657 scopus 로고    scopus 로고
    • A tetrahedral transition state at the active sites of the 20S proteasome is coupled to opening of the alpha-ring channel
    • Osmulski PA, Hochstrasser M, Gaczynska M, (2009) A tetrahedral transition state at the active sites of the 20S proteasome is coupled to opening of the alpha-ring channel. Structure 17: 1137-1147
    • (2009) Structure , vol.17 , pp. 1137-1147
    • Osmulski, P.A.1    Hochstrasser, M.2    Gaczynska, M.3
  • 51
    • 78649848069 scopus 로고    scopus 로고
    • The immunoproteasome, the 20S proteasome and the PA28alphabeta proteasome regulator are oxidative-stress-adaptive proteolytic complexes
    • Pickering AM, Koop AL, Teoh CY, Ermak G, Grune T, Davies KJ, (2010) The immunoproteasome, the 20S proteasome and the PA28alphabeta proteasome regulator are oxidative-stress-adaptive proteolytic complexes. Biochem J 432: 585-594
    • (2010) Biochem J , vol.432 , pp. 585-594
    • Pickering, A.M.1    Koop, A.L.2    Teoh, C.Y.3    Ermak, G.4    Grune, T.5    Davies, K.J.6
  • 53
    • 0025923904 scopus 로고
    • H-2Kd-restricted antigenic peptides share a simple binding motif
    • Romero P, Corradin G, Luescher IF, Maryanski JL, (1991) H-2Kd-restricted antigenic peptides share a simple binding motif. J Exp Med 174: 603-612
    • (1991) J Exp Med , vol.174 , pp. 603-612
    • Romero, P.1    Corradin, G.2    Luescher, I.F.3    Maryanski, J.L.4
  • 54
    • 84870938343 scopus 로고    scopus 로고
    • Proteasome allostery as a population shift between interchanging conformers
    • Ruschak AM, Kay LE, (2012) Proteasome allostery as a population shift between interchanging conformers. Proc Natl Acad Sci USA 109: E3454-E3462
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. E3454-E3462
    • Ruschak, A.M.1    Kay, L.E.2
  • 55
    • 79955751471 scopus 로고    scopus 로고
    • Proteasome activator 200: The heat is on
    • Savulescu AF, Glickman MH, (2011) Proteasome activator 200: the heat is on. Mol Cell Proteomics 10: R110.006890
    • (2011) Mol Cell Proteomics , vol.10 , pp. R110006890
    • Savulescu, A.F.1    Glickman, M.H.2
  • 56
    • 0034353223 scopus 로고    scopus 로고
    • The proteasome regulator PA28alpha/beta can enhance antigen presentation without affecting 20S proteasome subunit composition
    • Schwarz K, Eggers M, Soza A, Koszinowski UH, Kloetzel PM, Groettrup M, (2000) The proteasome regulator PA28alpha/beta can enhance antigen presentation without affecting 20S proteasome subunit composition. Eur J Immunol 30: 3672-3679
    • (2000) Eur J Immunol , vol.30 , pp. 3672-3679
    • Schwarz, K.1    Eggers, M.2    Soza, A.3    Koszinowski, U.H.4    Kloetzel, P.M.5    Groettrup, M.6
  • 61
    • 0034640520 scopus 로고    scopus 로고
    • Hybrid proteasomes. Induction by interferon-gamma and contribution to ATP-dependent proteolysis
    • Tanahashi N, Murakami Y, Minami Y, Shimbara N, Hendil KB, Tanaka K, (2000) Hybrid proteasomes. Induction by interferon-gamma and contribution to ATP-dependent proteolysis. J Biol Chem 275: 14336-14345
    • (2000) J Biol Chem , vol.275 , pp. 14336-14345
    • Tanahashi, N.1    Murakami, Y.2    Minami, Y.3    Shimbara, N.4    Hendil, K.B.5    Tanaka, K.6
  • 65
    • 39049117451 scopus 로고    scopus 로고
    • Identifying dynamic interactors of protein complexes by quantitative mass spectrometry
    • Wang X, Huang L, (2008) Identifying dynamic interactors of protein complexes by quantitative mass spectrometry. Mol Cell Proteomics 7: 46-57
    • (2008) Mol Cell Proteomics , vol.7 , pp. 46-57
    • Wang, X.1    Huang, L.2
  • 69
    • 84897606668 scopus 로고    scopus 로고
    • A comparative analysis of computational approaches and algorithms for protein subcomplex identification
    • Zaki N, Mora A, (2014) A comparative analysis of computational approaches and algorithms for protein subcomplex identification. Sci Rep 4: 4262
    • (2014) Sci Rep , vol.4 , pp. 4262
    • Zaki, N.1    Mora, A.2
  • 70
    • 33750476672 scopus 로고    scopus 로고
    • Circulating proteasomes are functional and have a subtype pattern distinct from 20S proteasomes in major blood cells
    • Zoeger A, Blau M, Egerer K, Feist E, Dahlmann B, (2006) Circulating proteasomes are functional and have a subtype pattern distinct from 20S proteasomes in major blood cells. Clin Chem 52: 2079-2086
    • (2006) Clin Chem , vol.52 , pp. 2079-2086
    • Zoeger, A.1    Blau, M.2    Egerer, K.3    Feist, E.4    Dahlmann, B.5


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