Identification of the remains of King Richard III

Nature Communications

Volumn 5, Issue , 2014, Pages

  King, Turi E ^a   Fortes, Gloria Gonzalez ^b,c   Balaresque, Patricia ^d   Thomas, Mark G ^e   Balding, David ^e   Delser, Pierpaolo Maisano ^a   Neumann, Rita ^a   Parson, Walther ^f,g   Knapp, Michael ^h   Walsh, Susan ^i,j   Tonasso, Laure ^d   Holt, John ^a   Kayser, Manfred ^j   Appleby, Jo ^a   Forster, Peter ^k,l   Ekserdjian, David ^a   Hofreiter, Michael ^b,c   Schürer, Kevin ^a  

^a UNIVERSITY OF LEICESTER   (United Kingdom)

^b UNIVERSITY OF YORK   (United Kingdom)

^c UNIVERSITY OF POTSDAM   (Germany)

^d UNIVERSITÉ PAUL SABATIER   (France)

^e UNIVERSITY COLLEGE LONDON   (United Kingdom)

^f INNSBRUCK MEDICAL UNIVERSITY   (Austria)

^g PENNSYLVANIA STATE UNIVERSITY   (United States)

^h BANGOR UNIVERSITY   (United Kingdom)

ⁱ YALE UNIVERSITY   (United States)

^j ERASMUS MEDICAL CENTER   (Netherlands)

^k UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^l UNIVERSITY OF CAMBRIDGE   (United Kingdom)

more..

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ARCHAEOLOGICAL EVIDENCE; CHROMOSOME; DNA; GENETIC ANALYSIS; MITOCHONDRIAL DNA; PATERNITY; RADIOCARBON DATING;

ARCHEOLOGY; ARTICLE; DNA DETERMINATION; DNA SEQUENCE; EYE COLOR; GENETIC IDENTIFICATION; HAIR COLOR; HAPLOGROUP; HAPLOTYPE; HUMAN; MITOCHONDRIAL GENOME; NUCLEIC ACID BASE SUBSTITUTION; OSTEOLOGY; PATERNITY; RADIOMETRIC DATING; RELATIVE; SINGLE NUCLEOTIDE POLYMORPHISM; SKELETON; Y CHROMOSOME; ART; DNA FINGERPRINTING; FORENSIC ANTHROPOLOGY; FORENSIC GENETICS; GENETICS; MALE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

ENGLAND; LEICESTER [ENGLAND]; UNITED KINGDOM;

BASE SEQUENCE; CHROMOSOMES, HUMAN, Y; DNA FINGERPRINTING; DNA, MITOCHONDRIAL; FORENSIC ANTHROPOLOGY; FORENSIC GENETICS; HAPLOTYPES; HUMANS; MALE; MOLECULAR SEQUENCE DATA; PATERNITY;

EID: 84922652716     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms6631     Document Type: Article

References (47)

1. Rous, J Joannis Rossi antiquiarii Wawicensis Historia Regum Angliae (Oxford: Theatro Sheldoniano, 1745 [1486]).
2. Speed, J The History of Great Britaine under the Conquests of ye Romans, Saxons, Danes and Normans (William Hall & William Beale, 1611).
3. Bilson, C. J. Medieval Leicester (Edgar Backus, 1920).
4. Baldwin, D. King Richard's grave in Leicester. Trans. Leicestershire Archaeol. and Hist. Soc. 60, 21-24 (1986).
5. Strange, A. The Grey Friars, Leicester. Ricardian 3, 3-7 (1975).
6. Buckley, R. et al. 'The king in the car park': new light on the death and burial of Richard III in the Grey Friars church, Leicester, in 1485. Antiquity 87, 519-538 (2013).
7. Appleby, J. et al. Perimortem trauma in King Richard III: a skeletal analysis. Lancet doi: 10.1016/S0140-6736(14)60804-7 (2014).
8. Appleby, J. et al. The scoliosis of Richard III, last Plantagenet King of England: diagnosis and clinical significance. Lancet 383, 1944 (2014).
9. Lamb, A., Evans, J., Buckley, R. & Appleby, J. Multi-isotope analysis demonstrates significant lifestyle changes in King Richard III. J. Archaeol. Sci. 50, 559-565 (2014).
10. Cadamuro, V. C. et al. Determined about sex: sex-Testing in 45 primate species using a 2Y/1X sex-Typing assay. Forensic Sci. Int. Gen. 14C, 96-107 (2014).
11. Mosely, C. Burke's Peerage, Baronetage and Knightage: Clan Chiefs, Scottish Feudal Barons (Boydell & Brewer Ltd., 2003).
12. King, T. E. & Jobling, M. A. Founders, drift and infidelity: the relationship between Y chromosome diversity and patrilineal surnames. Mol. Biol. Evol. 26, 1093-1102 (2009).
13. Rocca, R. et al. Discovery of Western European R1b1a2 Y chromosome variants in 1000 Genomes Project Data: an online community approach. PLoS ONE 7, e41634 (2012).
14. Karafet, T. et al. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res. 18, 830-838 (2008).
15. Hodges, E. et al. Hybrid selection of discrete genomic intervals on customdesigned microarrays for massively parallel sequencing. Nat. Protoc. 4, 960-974 (2009).
16. Meyer, M. & Kircher, M. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb. Protoc. doi: 10.1101/pdb.prot5448 (2010).
17. Jobling, M. A., Heyer, E., Dieltjes, P. & de Knijff, P. Y-chromosome-specific microsatellite mutation rates re-examined using a minisatellite, MSY1. Hum. Mol. Genet. 8, 2117-2120 (1999).
18. Larmuseau, M. H. D. et al. Low historical rates of cuckoldry in a Western European human population traced by Y-chromosome and genealogical data. Proc. R. Soc. B 280, 20132400 (2013).
19. MAHD Heddle de la Caillemotte de Massue de Ruvigny Marquis de Ruvigny and Raineval. in The Anne of Exeter Volume, Containing the Descendants of Anne-Plantegenet-Duchess of Exeter 2 (T.C.& E.C. Jack, 1907).
20. Ashdown-Hill, J. Alive and well in Canada-The Mitochondrial DNA of Richard III. Ricardian 16, 113-132 (2006).
21. Ashdown-Hill, J The Last Days of Richard III (The History Press, 2011).
22. Yonsei DNA Profiling Group. Monoplex PCR sets for degraded DNA. Available at ohttp: //forensic.yonsei.ac.kr/protocol/mtDNA-midi-mini.pdf4 (2004-2008).
23. Hofreiter, M., Jaenicke, V., Serre, D., Von Haeseler, A. & Pääbo, S. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res. 29, 4793-4799 (2001).
24. Briggs, A. et al. Patterns of damage in genomic DNA sequences from a Neanderthal. Proc. Natl Acad. Sci. USA 104, 14616-14621 (2007).
25. Brotherton, P. et al. Novel high-resolution characterization of ancient DNA reveals C4U-Type base modification events as the sole cause of post mortem miscoding lesions. Nucleic Acids Res. 35, 5717-5728 (2007).
26. Meyer, M., Stenzel, U., Myles, S., Prüfer, K. & Hofreiter, M. Targeted highthroughput sequencing of tagged nucleic acid samples. Nucleic Acids Res. 35, e97 (2007).
27. Andrews, R. M. et al. Reanalysis and revision of the Cambridge reference sequence for the human mitochondrial DNA. Nat. Genet. 23, 147 (1999).
28. Parsons, T. J. et al. A high observed substitution rate in the human mitochondrial DNA control region. Nat. Genet. 15, 363-367 (1997).
29. Parson, W. & Dür, A. EMPOP-A forensic mtDNA database. Forensic Sci. Int. Gen. 1, 88-92 (2007).
30. Röhl, A., Brinkmann, B., Forster, L. & Forster, P. An annotated mtDNA database. Int. J. Legal Med. Aug. 115, 29-39 (2001).
31. Walsh, S. et al. The HIrisPlex system for simulataneous prediction of hair and eye colour from DNA. Forensic Sci. Int.: Gen. 7, 98-115 (2013).
32. Fortes, G. G., Speller, C. F., Hofreiter, M. & King, T. E. Phenotypes from ancient DNA: approaches, insights and prospects. Bioessays 35, 690-695 (2014).
33. Hepburn, F Portaits of the Later Plantagenets (The Boydell Press, 1986).
34. Erasmus MC Forensic Molecular Biology Department HirisPlex Eye and Hair Colour Phenotyping Webtool. Available at ohttp: //www.erasmusmc.nl/fmb/ resources/Irisplex-HIrisPlex/4.
35. Jeffreys, A. J., Allen, M. J., Hagelberg, E. & Sonnberg, A. Identification of the skeletal remains of Joseph Mengele by DNA analysis. Forensic Sci. Int. 56, 65-76 (1992).
36. Coble, M. D. et al. Mystery solved: the identification of the the two missing Romanov children using DNA analysis. PLoS ONE 4, e4838 (2009).
37. Yang, D. & Watt, K. Contamination controls when preparing archaeological remains for ancient DNA analysis. J. Archaeol. Sci. 32, 331-336 (2005).
38. Fortes, G. G. & Paijmans, J. L. A. in Whole Genome Amplicfication (ed. Kroneis, T.) (Humana Press, 2014).
39. Bollongino, R. et al. 2000 years of parallel societies in Stone Age Central Europe. Science 342, 479-481 (2013).
40. Zhang, H. et al. Morphological and genetic evidence for early Holocene cattle management in northeastern China. Nat. Commun. 4, 2755 (2013).
41. Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
42. Milne, I. et al. Using Tablet for visual exploration of second-generation sequencing data. Brief. Bioinform. 14, 193-202 (2013).
43. Thorvaldsdottir, H., Robinson, J. & Mesirov, J. Integrative Genomics Viewer (IGV): high-perfomance genomics data visualization and exploration. Brief. Bioinform. 14, 178-192 (2013).
44. Römpler, H. et al. Multiplex amplification of ancient DNA. Nat. Protoc. 1, 720-728 (2006).
45. Binladen, J., Gilbert, M. T., Campos, P. F. & Willerslev, E. 50-Tailed sequencing primers improve sequencing quality of PCR products. Biotechniques 42, 174-176 (2007).
46. McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
47. Foster, E. et al. The Thomas Jefferson paternity case. Nature 397, 32 (1999).