Testing calibration of risk models at extremes of disease risk

Biostatistics

Volumn 16, Issue 1, 2015, Pages 143-154

  Song, Minsun ^a   Kraft, Peter ^b   Joshi, Amit D ^b   Barrdahl, Myrto ^c   Chatterjee, Nilanjan ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^c GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

Author keywords

Case control studies; Gene gene and gene environment interactions; Genome wide association studies; Goodness of fit tests; Polygenic score; Risk stratification

Indexed keywords

BIOLOGICAL MODEL; BREAST TUMOR; CALIBRATION; GENETIC PREDISPOSITION; GENETICS; GENOME-WIDE ASSOCIATION STUDY; HUMAN; RISK ASSESSMENT; STATISTICAL MODEL; STATISTICS AND NUMERICAL DATA;

BREAST NEOPLASMS; CALIBRATION; GENETIC PREDISPOSITION TO DISEASE; GENOME-WIDE ASSOCIATION STUDY; HUMANS; MODELS, GENETIC; MODELS, STATISTICAL; RISK ASSESSMENT;

EID: 84922545268     PISSN: 14654644     EISSN: 14684357     Source Type: Journal    
DOI: 10.1093/biostatistics/kxu034     Document Type: Article

References (16)

1. CHATTERJEE, N.,WHEELER, B., SAMPSON, J.,HARTGE, P.,CHANOCK, S. J. AND PARK, J.-H. (2013). Projecting the performance of risk prediction based on polygenic analyses of genome-wide association studies. Nature genetics 45(4), 400-405.
2. HOSMER, D. W. AND LEMESHOW, S. (2000). Applied Logistic Regression. New York: John Wiley & Sons.
3. HUNTER, D. J., RIBOLI, E., HAIMAN, C. A., ALBANES, D., ALTSHULER, D., CHANOCK, S. J., HAYNES, R. B., HENDERSON, B. E., KAAKS, R., STRAM, D. O. and others. (2005). A candidate gene approach to searching for low-penetrance breast and prostate cancer genes. Nature Reviews. Cancer 5(12), 977-985.
4. HÜSING, A., CANZIAN, F., BECKMANN, L., GARCIA-CLOSAS, M., DIVER, W. R., THUN, M. J., BERG, C. D., HOOVER, R. N., ZIEGLER, R. G., FIGUEROA, J. D. and others. (2012). Prediction of breast cancer risk by genetic risk factors, overall and by hormone receptor. Journal of Medical Genetics 49, 601-608.
5. KHOURY, M. J., JANSSENS, A. C. AND RANSOHOFF, D. F. (2013). How can polygenic inheritance be used in population screening for common diseases? Genetics in Medicine 15(6), 437-443.
6. MEIGS, J. B., SHRADER, P., SULLIVAN, L. M.,MCATEER, J. B., FOX, C. S.,DUPUIS, J.,MANNING, A. K., FLOREZ, J. C., WILSON, P. W. F.,D'AGOSTINO, SR, R. B. AND CUPPLES, L. A. (2008). Genotype score in addition to common risk factors for prediction of type 2 diabetes. New England Journal of Medicine 359(21), 2208-2219.
7. MOONESINGHE, R.,KHOURY, M. J.,LIU, T. AND JANSSENS, A. C. (2011). Discriminative accuracy of genomic profiling comparing multiplicative and additive risk models. European Journal of Human Genetics 19(2), 180-185.
8. PRENTICE, R. L. AND PYKE, R. (1979). Logistic disease incidence models and case-control studies. Biometrika 66(3), 403-411.
9. ROTHMAN, K. J. AND GREENLAND, S. (1998). Modern Epidemiology. Philadelphia: Lippincott Williams & Wilkins.
10. SIEMIATYCKI, J. AND THOMAS, D. C. (1981). Biological models and statistical interactions: an example from multistage carcinogenesis. International Journal of Epidemiology 10(4), 383-387.
11. THOMPSON, W. D. (1991). Effect modification and the limits of biological inference from epidemiologic data. Journal of Clinical Epidemiology 44, 221-232.
12. TSIATIS, A. A. (1980). A note on a goodness-of-fit test for the logistic regression model. Biometrika 67(1), 250-251.
13. WACHOLDER, S.,HARTGE, P., PRENTICE, R.,GARCIA-CLOSAS, M., FEIGELSON, H. S.,DIVER, W. R.,THUN, M. J.,COX, D. G., HANKINSON, S. E.,KRAFT, P. and others. (2010). Performance of common genetic variants in breast-cancer risk models. New England Journal of Medicine 362(11), 986-993.
14. WEINBERG, C. R. (1986). Applicability of the simple independent action model to epidemiologic studies involving two factors and a dichotomous outcome. American journal of epidemiology 123(1), 162-173.
15. WINDMEIJER, F. A. G. (1990). The asymptotic distribution of the sum of weighted squared residuals in binary choice models. Statistica Neerlandica 44(2), 69-78.
16. ZAITLEN, N., PASANIUC, B., PATTERSON, N., POLLACK, S.,VOIGHT, B.,GROOP, L.,ALTSHULER D., HENDERSON, B. E., KOLONEL, L. N., Le MARCHAND, L. and others. (2012). Analysis of case-control association studies with known risk variants. Bioinformatics 28(13), 1729-1737.