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Volumn 42, Issue 1, 2015, Pages 82-90

A mass spectrometry-based label-free quantitative approach coupled with complex proteome functional analysis

Author keywords

Biomedical knowledge; Label free quantitative approach; Mass spectrometry; Proteomics

Indexed keywords


EID: 84922360372     PISSN: 10003282     EISSN: None     Source Type: Journal    
DOI: 10.3724/SP.J.1206.2014.00191     Document Type: Article
Times cited : (1)

References (29)
  • 1
    • 66849113517 scopus 로고    scopus 로고
    • Quantitative proteomics and biomarker discovery in human cancer
    • Zhao Y, Lee W N P, Xiao G G. Quantitative proteomics and biomarker discovery in human cancer. Expert Rev Proteomics, 2009, 6(2): 115-118
    • (2009) Expert Rev Proteomics , vol.6 , Issue.2 , pp. 115-118
    • Zhao, Y.1    Lee, W.N.P.2    Xiao, G.G.3
  • 2
    • 34547810054 scopus 로고    scopus 로고
    • Quantitative mass spectrometry identifies insulin signaling targets in C. elegans
    • Dong M Q, Venable J D, Au N, et al. Quantitative mass spectrometry identifies insulin signaling targets in C. elegans. Science, 2007, 317(5838): 660-663
    • (2007) Science , vol.317 , Issue.5838 , pp. 660-663
    • Dong, M.Q.1    Venable, J.D.2    Au, N.3
  • 3
    • 0043198426 scopus 로고    scopus 로고
    • Proteomic tools for quantitation by mass spectrometry
    • Lill J. Proteomic tools for quantitation by mass spectrometry. Mass Spectrometry Reviews, 2003, 22(3): 182-194
    • (2003) Mass Spectrometry Reviews , vol.22 , Issue.3 , pp. 182-194
    • Lill, J.1
  • 4
    • 77952538049 scopus 로고    scopus 로고
    • Quantitation in mass-spectrometry-based proteomics
    • Schulze W X, Usadel B. Quantitation in mass-spectrometry-based proteomics. Annual Rev Plant Biol, 2010, 61: 491-516
    • (2010) Annual Rev Plant Biol , vol.61 , pp. 491-516
    • Schulze, W.X.1    Usadel, B.2
  • 6
    • 74049115774 scopus 로고    scopus 로고
    • Mass spectrometry-based label-free quantitative proteomics
    • 840518
    • Zhu W, Smith J W, Huang C M. Mass spectrometry-based label-free quantitative proteomics. J Biomed Biotechnol, 2009, 2010(840518): 1-6
    • (2009) J Biomed Biotechnol , vol.2010 , pp. 1-6
    • Zhu, W.1    Smith, J.W.2    Huang, C.M.3
  • 7
    • 84862202249 scopus 로고    scopus 로고
    • NSI and NSMT: Usages of MS/MS fragment ion intensity for sensitive differential proteome detection and accurate protein fold change calculation in relative label-free proteome quantification
    • Wu Q, Zhao Q, Liang Z, et al. NSI and NSMT: usages of MS/MS fragment ion intensity for sensitive differential proteome detection and accurate protein fold change calculation in relative label-free proteome quantification. Analyst, 2012, 137(13): 3146-3153
    • (2012) Analyst , vol.137 , Issue.13 , pp. 3146-3153
    • Wu, Q.1    Zhao, Q.2    Liang, Z.3
  • 8
    • 77949795829 scopus 로고    scopus 로고
    • Refinements to label free proteome quantitation: How to deal with peptides shared by multiple proteins
    • Zhang Y, Wen Z, Washburn M P, et al. Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. Analytical Chemistry, 2010, 82(6): 2272-2281
    • (2010) Analytical Chemistry , vol.82 , Issue.6 , pp. 2272-2281
    • Zhang, Y.1    Wen, Z.2    Washburn, M.P.3
  • 9
    • 33748319353 scopus 로고    scopus 로고
    • Statistical Analysis of Membrane Proteome Expression Changes in Saccharomyces cerevisiae
    • Zybailov B, Mosley A L, Sardiu ME, et al. Statistical Analysis of Membrane Proteome Expression Changes in Saccharomyces cerevisiae. J Proteome Research, 2006, 5(9): 2339-2347
    • (2006) J Proteome Research , vol.5 , Issue.9 , pp. 2339-2347
    • Zybailov, B.1    Mosley, A.L.2    Sardiu, M.E.3
  • 10
    • 3042818018 scopus 로고    scopus 로고
    • The international protein index: An integrated database for proteomics experiments
    • Kersey P J, Duarte J, Williams A, et al. The international protein index: an integrated database for proteomics experiments. Proteomics, 2004, 4(7): 1985-1988
    • (2004) Proteomics , vol.4 , Issue.7 , pp. 1985-1988
    • Kersey, P.J.1    Duarte, J.2    Williams, A.3
  • 11
    • 34547571030 scopus 로고    scopus 로고
    • g: Profiler - A web-based toolset for functional profiling of gene lists from large-scale experiments
    • Reimand J, Kull M, Peterson H, et al. g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Research, 2007, 35 (suppl 2): W193-W200
    • (2007) Nucleic Acids Research , vol.35 , pp. W193-W200
    • Reimand, J.1    Kull, M.2    Peterson, H.3
  • 12
    • 42549083356 scopus 로고    scopus 로고
    • Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria
    • Zhang J, Li X, Mueller M, et al. Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria. Proteomics, 2008, 8(8): 1564-1575
    • (2008) Proteomics , vol.8 , Issue.8 , pp. 1564-1575
    • Zhang, J.1    Li, X.2    Mueller, M.3
  • 13
    • 46749116296 scopus 로고    scopus 로고
    • Altered proteome biology of cardiac mitochondria under stress conditions
    • Zhang J, Liem D A, Mueller M, et al. Altered proteome biology of cardiac mitochondria under stress conditions. J Proteome Research, 2008, 7(6): 2204-2214
    • (2008) J Proteome Research , vol.7 , Issue.6 , pp. 2204-2214
    • Zhang, J.1    Liem, D.A.2    Mueller, M.3
  • 14
    • 84864011366 scopus 로고    scopus 로고
    • Mitochondrial proteome design: From molecular identity to pathophysiological regulation
    • Zhang J, Lin A, Powers J, et al. Mitochondrial proteome design: from molecular identity to pathophysiological regulation. J General Physiology, 2012, 139(6): 395-406
    • (2012) J General Physiology , vol.139 , Issue.6 , pp. 395-406
    • Zhang, J.1    Lin, A.2    Powers, J.3
  • 15
    • 34548620571 scopus 로고    scopus 로고
    • pFind 2.0: A software package for peptide and protein identification via tandem mass spectrometry
    • Wang L, Li D Q, Fu Y, et al. pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry. Rapid Communications in Mass Spectrometry, 2007, 21(18): 2985-2991
    • (2007) Rapid Communications in Mass Spectrometry , vol.21 , Issue.18 , pp. 2985-2991
    • Wang, L.1    Li, D.Q.2    Fu, Y.3
  • 16
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini Y, Yekutieli D. The control of the false discovery rate in multiple testing under dependency. Annals of Statistics, 2001: 1165-1188
    • (2001) Annals of Statistics , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 17
    • 79953171557 scopus 로고    scopus 로고
    • Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria
    • M110. 000117
    • Deng N, Zhang J, Zong C, et al. Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria. Mol Cell Proteomics, 2011, 10(2): M110. 000117
    • (2011) Mol Cell Proteomics , vol.10 , Issue.2
    • Deng, N.1    Zhang, J.2    Zong, C.3
  • 18
    • 33749242602 scopus 로고    scopus 로고
    • Functional annotation of proteins identified in human brain during the HUPO brain proteome project pilot study
    • Mueller M, Marters L, Reidegeld K A, et al. Functional annotation of proteins identified in human brain during the HUPO brain proteome project pilot study. Proteomics, 2006, 6(18): 5059-5075
    • (2006) Proteomics , vol.6 , Issue.18 , pp. 5059-5075
    • Mueller, M.1    Marters, L.2    Reidegeld, K.A.3
  • 20
    • 0042859821 scopus 로고    scopus 로고
    • Role of the mitochondrial permeability transition in myocardial disease
    • Weiss J N, Korge P, Honda H M, et al. Role of the mitochondrial permeability transition in myocardial disease. Circulation Research, 2003, 93(4): 292-301
    • (2003) Circulation Research , vol.93 , Issue.4 , pp. 292-301
    • Weiss, J.N.1    Korge, P.2    Honda, H.M.3
  • 22
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • C
    • Hall T A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT [C]//Nucleic acids symposium series. 1999, 41: 95-98
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 23
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
    • Tatusova T A, Madden T L. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiology Letters, 1999, 174(2): 247-250
    • (1999) FEMS Microbiology Letters , vol.174 , Issue.2 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 27
    • 0347986768 scopus 로고    scopus 로고
    • Lineage-specific selection in human mtDNA: Lack of polymorphisms in a segment of MTND5 gene in haplogroup J
    • Moilanen J S, Finnilä S, Majamaa K. Lineage-specific selection in human mtDNA: lack of polymorphisms in a segment of MTND5 gene in haplogroup J. Molecular Biology and Evolution, 2003, 20(12): 2132-2142
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.12 , pp. 2132-2142
    • Moilanen, J.S.1    Finnilä, S.2    Majamaa, K.3
  • 29
    • 33947092515 scopus 로고
    • Structural basis of the activation and action of trypsin
    • Huber R, Bode W. Structural basis of the activation and action of trypsin. Acc Chem Res, 1978, 11(3): 114-122
    • (1978) Acc Chem Res , vol.11 , Issue.3 , pp. 114-122
    • Huber, R.1    Bode, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.