Ballaxy: Web services for structural bioinformatics

Bioinformatics

Volumn 31, Issue 1, 2015, Pages 121-122

  Hildebrandt, Anna Katharina ^a   Stöckel, Daniel ^a   Fischer, Nina M ^b   De La Garza, Luis ^b   Kröuger, Jens ^b   Nickels, Stefan ^a   Röttig, Marc ^b   Schärfe, Charlotta ^b   Schumann, Marcel ^b   Thiel, Philipp ^b   Lenhof, Hans Peter ^a   Kohlbacher, Oliver ^b   Hildebrandt, Andreas ^c  

^a SAARLAND UNIVERSITY   (Germany)

^b UNIVERSITY OF TÜBINGEN   (Germany)

^c JOHANNES GUTENBERG UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BIOLOGY; CHEMICAL STRUCTURE; COMPUTER INTERFACE; COMPUTER PROGRAM; DNA SEQUENCE; HUMAN; PROCEDURES; SYSTEM ANALYSIS; WORKFLOW;

ALGORITHMS; COMPUTATIONAL BIOLOGY; HUMANS; MODELS, MOLECULAR; SEQUENCE ANALYSIS, DNA; SOFTWARE; SYSTEMS INTEGRATION; USER-COMPUTER INTERFACE; WORKFLOW;

EID: 84922342819     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu574     Document Type: Article

References (11)

1. Dehof,A. et al. (2011a) Predicting protein NMR chemical shifts in the presence of ligands and ions using force field-based features. Proceedings of the German Conference on Bioinformatics (GCB 2011).
2. Dehof,A.K. et al. (2011b) Automated bond order assignment as an optimization problem. Bioinformatics, 27, 619-625.
3. Dehof,A.K. et al. (2013) NightShift: NMR shift inference by general hybrid model training-A framework for NMR chemical shift prediction. BMC Bioinformatics, 14, 98.
4. Gesing,S. et al. (2012) A single sign-on infrastructure for science gateways on a use case for structural bioinformatics. J. Grid. Comput., 10, 769-790.
5. Goecks,J. et al. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
6. Herres-Pawlis,S. et al. (2012) Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway. Stud. Health Technol. Inform., 175, 142-151.
7. Hildebrandt,A. et al. (2010) BALL-Biochemical Algorithms Library 1.3. BMC Bioinformatics, 11, 531.
8. Hildebrandt,A. et al. (2013) Efficient computation of root mean square deviations under rigid transformations. J. Comput. Chem., 35, 765-771.
9. Kohlbacher,O. (2012) CADDSuite-A workflow-enabled suite of open-source tools for drug discovery. J. Cheminform., 4, 02.
10. Moll,A. et al. (2005) BALLView: an object-oriented molecular visualization and modeling framework. J. Comput. Aided Mol. Des., 19, 791-800.
11. Moll,A. et al. (2006) BALLView: a tool for research and education in molecular modeling. Bioinformatics, 22, 365-366.