Genetic linkage map construction and QTL mapping of salt tolerance traits in zoysiagrass (Zoysia japonica)

PLoS ONE

Volumn 9, Issue 9, 2014, Pages

  Guo, Hailin ^a   Ding, Wanwen ^a   Chen, Jingbo ^a   Chen, Xuan ^a   Zheng, Yiqi ^a   Wang, Zhiyong ^a   Liu, Jianxiu ^a  

^a INSTITUTE OF BOTANY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BREEDING; GENETIC LINKAGE; GENETIC MARKER; PLANT LEAF; PROGENY; QUANTITATIVE TRAIT LOCUS MAPPING; RANDOM AMPLIFIED POLYMORPHIC DNA; SALT TOLERANCE; CHROMOSOME MAP; GENETIC POLYMORPHISM; GENETICS; POACEAE; PROCEDURES; QUANTITATIVE TRAIT LOCUS;

GENETIC MARKER; PLANT DNA;

BREEDING; CHROMOSOME MAPPING; DNA, PLANT; GENETIC LINKAGE; GENETIC MARKERS; PLANT LEAVES; POACEAE; POLYMORPHISM, GENETIC; QUANTITATIVE TRAIT LOCI; SALT-TOLERANCE;

EID: 84922266279     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0107249     Document Type: Article

References (66)

1. Shahid SA (2013) Developments in soil salinity assessment, modeling, mapping, and monitoring from regional to submicroscopic scales. Chpater1In: Shahid SA, Abdelfattah MA, Taha FK (eds.) Developments in soil salinity assessment and reclamation: Innovative thinking and use of marginal soil and water resources in irrigated agriculture. Netherlands: Springer, pp. 3-43.
2. Zhang F, Ding JL, Tashpolat T, Wang BC (2007) Analysis on characteristics of soil salinization in the arid regions: A case study in the delta oasis of Weigan and Kuqa rivers. Acta Prataculturae Sinica 16: 34-40.
3. Ghassemi F, Jakeman AJ, Nix HA (1995) Salinisation of land and water resources. Wallingford Oxon, UK: CAB International. pp. 291-335.
4. Engelke MC, Anderson S (2002) Zoysiagrasses (Zoysia spp.). In: Michael DC, Ronny RD, Turfgrass Biology, Genetics and Breeding. New Jersey: John Wiley and Sons, Inc. pp. 271-285.
5. Guo HL, Liu JX (2004) Zoysiagrass breeding progress summary. Acta Prataculturae Sinica 13:106-112.
6. Forbes I Jr (1952) Chromosome numbers and hybrids in Zoysia. Agronomy Journal 44:194-199.
7. Yaneshita M, Kaneko S, Sasakuma T (1999) Alleotetraploid of Zoysia species with 2n= 40 based on a RFLP genetic map. Theor Appl Genet 98: 751-756.
8. Marcum KB, Murdoch CL (1994) Salinity tolerance mechanisms of six C4 turfgrasses. J Amer Soc Hort Sci 119:779-784.
9. Marcum KB, Anderson SJ, Engelke MC (1998) Salt gland ion secretion: A salinity tolerance mechanism among five zoysiagrass species. Crop Sci 38:806-810.
10. Marcum KB (1999) Salinity tolerance mechanisms of grasses in the subfamily chloridoideae. Crop Sci 39:1153-1160.
11. Qian YL, Engelke MC, Foster MJV (2000) Salinity effects on zoysiagrass cultivars and experimental lines. Crop Sci 40:488-492.
12. Chen JB, Yan J, Jiang YQ, Guo HL, Zhang TT, et al. (2009) Preliminary evaluation on salinity tolerance of excellent selections and cultivars of warm season turfgrass. Acta Prataculturae Sinica 18:107-114.
13. LI S, Chen JB, Guo HL, Zong JQ, Zhang F, et al. (2012) Salinity tolerance evaluation of Zoysia turfgrass germplasm. Acta Prataculturae Sinica 21:3-51.
14. Harivandi A, Bulter JD, Wu L (1992) Salinity and turfgrass culture. In: Waddington DV, et al. (ed) Turfgrass Agron Monogr 32. ASA, CSSA, and SSSA, Madison, WI. pp. 208-230.
15. Weng JH, Chen YC (2001) Variation of salinity tolerance in Zoysia clones collected from different habitats in Taiwan. Plant Prod Sci 4: 313-316.
16. Cai HW, Inoue M, Yuyama N, Takahashi W, Hirata M, et al. (2005) Isolation characterization and mapping of simple sequence repeat markers in zoysiagrass (Zoysia spp.). Theor Appl Genet 112:158-166.
17. Li ML, Yuyama N, Hirata M, Han JG, Wang YW, et al. (2009) Construction of a high-density SSR marker-based linkage map of zoysiagrass (Zoysia japonica Steud.). Euphytica 170:327-338.
18. Cai HW, Inoue M, Yuyama N, Nakayama S (2004) An AFLP based linkage map of zoysiagrass (Zoysia japonica). Plant Breed 123:543-548.
19. Ebina M, Kobayashi M, Kasuga S, Araya H, Nakagawa H (1999) An AFLP based genome map of zoysiagrass. Plant and Animal Genome VII Conference. San Diego, CA, Jan. 17-21.
20. Yaneshita M, Kaneko S, Sasakuma T (1997) Genetic analysis of the winter leaf colour of Zoysia spp. facilitated by molecular markers. International Turf grass Society Research Journal 8: 401-408.
21. Ding CL, Liu Y, Shen YX, Gu HR (2010) QTL analysis of traits relating to cold resistance of Zoysia japonica. Acta Agrestia Sin 18:703-707.
22. Guo HL, Ding WW, Chen JB, Chen X, Liu JX (2012) Establishing a segregating population of salt tolerant Zoysia japonica. Acta Agrestia Sinica 20:724-728.
23. Guo HL, Chen JB, Chen X, Lin F, Li S, et al. (2012) Genetic analysis of salt tolerance in Zoysia japonica. Journal of Plant Genetic Resources 13: 733-738.
24. Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103:455-461.
25. Aneja B, Yadav NR, Chawla V, Yadav RC (2012) Sequence-related amplified polymorphism (SRAP) molecular marker system and its applications in crop improvement. Mol Breeding 30: 1635-1648.
26. Okazaki K, Sakamoto K, Kikuchi R, Saito A, Togashi E, et al. (2007) Mapping and characterization of FLC homologs and QTL analysis of flowering time in Brassica oleracea. Theor Appl Genet 114: 595-608.
27. Yeboah MA, Xuehao C, Feng CR, Liang G, Gu M (2007) A genetic linkage map of cucumber (Cucumis sativus L) combining SRAP and ISSR markers. Afr J Biotechnol 6:2784-2791.
28. Wang XD, Wang H, Long Y, Li DR, Yin YT, et al. (2013) Identification of QTLs associated with oil content in a high-oil Brassica napus Cultivar and Construction of a High-Density Consensus Map for QTLs Comparison in B. napus. PLoS one 8: e80569.
29. Zhang F, Chen SM, Jiang JF, Guan ZY, Fang WM, et al. (2013) Genetic mapping of quantitative trait loci underlying flowering time in Chrysanthemum (Chrysanthemum morifolium). PLoS one 8: e83023.
30. Zheng YQ, Guo HL, Zang GZ, Liu JX (2013) Genetic linkage maps of centipedegrass [Eremochloa ophiuroides (Munro) Hack] based on sequencerelated amplified polymorphism and expressed sequence tag-simple sequence repeat markers. Scientia Horticulturae 156:86-92.
31. Li G, Gao M, Yang B, Quiros CF (2003) Gene for gene alignment between the Brassica and Arabidopsis genomes by direct transcriptome mapping. Theor Appl Genet 107: 168-180.
32. Ferriol M, Picó B, Nuez F (2003) Genetic diversity of a germplasm collection of Cucurbita pepo using SRAP and AFLP markers. Theor Appl Genet 107: 271-282.
33. Chen X, Guo HL, Xue DD, Liu JX(2008) Identification of Zoysia hybrids bv SRAP analysis. Molecular Plant Breeding 6:1233-1238.
34. Xue DD, Zheng YQ, Wang ZY, Guo HL, Chen X, et al. (2008) Establishment and optimization of SRAP-PCR reaction system for Zoysia. Acta Prataculturae Sinica 17: 93-101.
35. Guo HL, Zheng YQ, Chen X, Xue DD, Liu JX (2009) Genetic diversity and relationships of zoysiagrass as revealed by SRAP markers. Acta Prataculturae Sinica 18:201-210.
36. Bhardwaj M, Uppal S, Jain S, Kharb P, Dhillon R, et al. (2010) Comparative assessment of ISSR and RAPD marker assays for genetic diversity analysis in jojoba [Simmondsia chinensis (Link) Schneider]. J Plant Biochemistry & Biotechnology 19: 255-258.
37. Garcia AAF, Benchimol LL, Barbosa AMM, Geraldi IO, Souza CLJ, et al. (2004) Comparison of RAPD, RFLP, AFLP and SSR markers for diversity studies in tropical maize inbred lines. Genet Mol Biol 27:579-588.
38. Kumar A, Sharma N, Panwar P, Gupta AK (2012) Use of SSR, RAPD markers and protein profiles based analysis to differentiate Eleusine coracana genotypes differing in their protein content. Mol Biol Rep 39:4949-4960.
39. Foolad MR, Chen FQ (1998) RAPD markers associated with salt tolerance in an interspecific cross of tomato (Lycopersicon esculentum 6L. pennellii). Plant Cell Reports 17:306-312.
40. Parani M, Lakshmi M, Senthilkumar P, Ram N, Parida A (1998) Molecular phylogeny of mangroves V. analysis of genome relationships in mangrove species using RAPD and RFLP markers. Theor Appl Genet 97: 617-625.
41. Sheng HM, An LZ, Chen T, Xu SJ, Liu GX, et al. (2006) Analysis of the genetic diversity and relationships among and within species of Hippophae (Elaeagnaceae) based on RAPD markers. Pl Syst Evol 260: 25-37.
42. Li ML, Yuyama N, Hirata M, Wang YW, Han JG, et al. (2010) An integrated SSR based linkage map for Zoysia matrella L. and Z. japonica Steud. Mol Breeding 26:467-476.
43. LI Y, Geng L, Liu JX (2004) Assessment on salt tolerance of Zoysia spp. in China Acta Agrestia Sinica 12: 8-16.
44. Van Ooijen JW, Voorrips RE (2001) JoinMapR Version 3.0: software for the calculation of genetic linkage maps. CPRO-DLO, Wageningen.
45. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12:172-175.
46. Chakravarti A, Lasher L, Reefer J (1991) A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128: 175-182.
47. Van Ooijen JW (2004) MapQTL 5.0: Software for the mapping quantitative trait loci in experimental populations. Plant Research International, Wageningen.
48. Voorrips RE (2002) MapChart 2.1. Plant Research International, Wageningen.
49. Xu S (1996) Mapping quantitative trait loci using four-way crosses. Genet Res 68:175-181.
50. Leroy T, de Bellis F, Legnate H, Kananura E, Gonzales G, et al. (2011) Improving the quality of African robustas: QTLs for yield-And quality-related traits in Coffea canephora. Tree Genet Genomes 7:781-798.
51. Qin HD, Guo WZ, Zhang YM, Zhang TZ (2008) QTL mapping of yield and fiber traits based on a four-way cross population in Gossypium hirsutum L. Theor Appl Genet 117:883-894.
52. Fukuoka H (1989) Breeding of Zoysia spp. (in Japanese). J Jpn Soc Turfgrass Sci 17:183-190.
53. Xu WW, Sleper DA, Chao S (1995) Genome mapping of polyploid tall fescue (Festuca arundinacea Schreb.) with RFLP markers. Theor Appl Genet 91:947-955.
54. Saha MC, Mian R, Zwonitzer JC, Chekhovskiy K, Hopkins AA (2005) An SSRand AFLP-based genetic linkage map of tall fescue (Festuca arundinacea Schreb.). Theor Appl Genet 110: 323-336.
55. Anhalt UCM, Heslop-Harrison P, Byrne S, Guillard A, Barth S (2008) Segregation distortion in Lolium: evidence for genetic effects. Theor Appl Genet 117:297-306.
56. Chen MM, Feng FJ, Sui X, Li MH, Zhao D, et al. (2010) Construction of a framework map for Pinus koraiensis Sieb.et Zucc. using SRAP, SSR and ISSR markers. Trees 24:685-693.
57. Geng JF, Zhu CS, Zhang XW, Cheng Y, Zhang YM, et al. (2007) A genetic linkage map of nonheading chinese cabbage. J Amer Soc Hort Sci 132:816-823.
58. Lin ZX, Zhang YX, Zhang XL, Guo XP (2009) A high-density integrative linkage map for Gossypium hirsutum. Euphytica 166:35-45.
59. Li SS, Jia JZ, Wei XY, Zhang XC, Li LZ, et al. (2007) A intervarietal genetic map and QTL analysis for yield traits in wheat. Mol Breeding 20:167-178.
60. Zhang ZS, Hu MC, Zhang J, Liu DJ, Zheng J, et al. (2009) Construction of a comprehensive PCR-based marker linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.). Mol Breeding 24:49-61.
61. Ma LQ, Zhou EF, Huo NX, Zhou RH, Wang GY, et al. (2007) Genetic analysis of salt tolerance in a recombinant inbred population of wheat (Triticum aestivum L.). Euphytica 153:109-117.
62. Kim DM, Ju HG, Kwon TR, Oh CS, Ahn SN (2009) Mapping QTLs for salt tolerance in an introgression line population between japonica cultivars in Rice. J Crop Sci Biotech 12: 121-128.
63. Xue DW, ?Huang YZ, ?Zhang XQ, Wei K, Westcott S, et al. (2009) Identification of QTLs associated with salinity tolerance at late growth stage in barley. Euphytica169:187-196.
64. Wang JP, Drayton MC, George J, Cogan NOI, Baillie RC, et al. (2010) Identification of genetic factors influencing salt stress tolerance in white clover (Trifolium repens L.) by QTL analysis. Theor Appl Genet 120:607-619.
65. Hamwieh A, Tuyen DD, Cong H, Benitez ER, Takahashi R, et al. (2011) Identification and validation of a major QTL for salt tolerance in soybean. Euphytica 179:451-459.
66. Sharma PC, Sehgal D, Singh D, Singh G, Yadav RS (2011) A major terminal drought tolerance QTL of pearl millet is also associated with reduced salt uptake and enhanced growth under salt stress. Mol Breeding 27:207-222.