-
1
-
-
33746363573
-
An RNAdependent RNA polymerase is required for paramutation in maize
-
Alleman, M., Sidorenko, L., McGinnis, K., Seshadri, V., Dorweiler, J.E., White, J., Sikkink, K., and Chandler, V.L. (2006). An RNAdependent RNA polymerase is required for paramutation in maize. Nature 442: 295–298.
-
(2006)
Nature
, vol.442
, pp. 295-298
-
-
Alleman, M.1
Sidorenko, L.2
Mc ginnis, K.3
Seshadri, V.4
Dorweiler, J.E.5
White, J.6
Sikkink, K.7
Chandler, V.L.8
-
2
-
-
84877677064
-
Classification and comparison of small RNAs from plants. Annu
-
Axtell, M.J. (2013). Classification and comparison of small RNAs from plants. Annu. Rev. Plant Biol. 64: 137–159.
-
(2013)
Rev. Plant Biol
, vol.64
, pp. 137-159
-
-
Axtell, M.J.1
-
3
-
-
84880377711
-
Posttranslational modification of CENP-A influences the conformation of centromeric chromatin
-
Bailey, A.O., Panchenko, T., Sathyan, K.M., Petkowski, J.J., Pai, P.J., Bai, D.L., Russell, D.H., Macara, I.G., Shabanowitz, J., Hunt, D.F., Black, B.E., and Foltz, D.R. (2013). Posttranslational modification of CENP-A influences the conformation of centromeric chromatin. Proc. Natl. Acad. Sci. USA 110: 11827–11832.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 11827-11832
-
-
Bailey, A.O.1
Panchenko, T.2
Sathyan, K.M.3
Petkowski, J.J.4
Pai, P.J.5
Bai, D.L.6
Russell, D.H.7
Macara, I.G.8
Shabanowitz, J.9
Hunt, D.F.10
Black, B.E.11
Foltz, D.R.12
-
4
-
-
84862979828
-
Repeat associated small RNAs vary among parents and following hybridization in maize
-
Barber, W.T., Zhang, W., Win, H., Varala, K.K., Dorweiler, J.E., Hudson, M.E., and Moose, S.P. (2012). Repeat associated small RNAs vary among parents and following hybridization in maize. Proc. Natl. Acad. Sci. USA 109: 10444–10449.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 10444-10449
-
-
Barber, W.T.1
Zhang, W.2
Win, H.3
Varala, K.K.4
Dorweiler, J.E.5
Hudson, M.E.6
Moose, S.P.7
-
5
-
-
85045484695
-
A morphological distinction between neurones of the male and female, and the behaviour of the nucleolar satellite during accelerated nucleoprotein synthesis
-
Barr, M.L., and Bertram, E.G. (1949). A morphological distinction between neurones of the male and female, and the behaviour of the nucleolar satellite during accelerated nucleoprotein synthesis. Nature 163: 676.
-
(1949)
Nature
, vol.163
, pp. 676
-
-
Barr, M.L.1
Bertram, E.G.2
-
6
-
-
73649140264
-
Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome
-
Baucom, R.S., Estill, J.C., Chaparro, C., Upshaw, N., Jogi, A., Deragon, J.M., Westerman, R.P., Sanmiguel, P.J., and Bennetzen, J.L. (2009). Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome. PLoS Genet. 5: e1000732.
-
(2009)
PLoS Genet
, vol.5
, pp. 1000732
-
-
Baucom, R.S.1
Estill, J.C.2
Chaparro, C.3
Upshaw, N.4
Jogi, A.5
Deragon, J.M.6
Westerman, R.P.7
Sanmiguel, P.J.8
Bennetzen, J.L.9
-
7
-
-
84922113172
-
Diversity and evolution of centromere repeats in the maize genome
-
Bilinski, P., Distor, K., Gutierrez-Lopez, J., Mendoza, G.M., Shi, J., Dawe, R.K., and Ross-Ibarra, J. (2014). Diversity and evolution of centromere repeats in the maize genome. Chromosoma, in press.
-
(2014)
Chromosoma, in press
-
-
Bilinski, P.1
Distor, K.2
Gutierrez-Lopez, J.3
Mendoza, G.M.4
Shi, J.5
Dawe, R.K.6
Ross-Ibarra, J.7
-
8
-
-
84899741616
-
The diversity, biogenesis, and activities of endogenous silencing small RNAs in Arabidopsis
-
Bologna, N.G., and Voinnet, O. (2014). The diversity, biogenesis, and activities of endogenous silencing small RNAs in Arabidopsis. Annu. Rev. Plant Biol. 65: 473–503.
-
(2014)
Annu. Rev. Plant Biol
, vol.65
, pp. 473-503
-
-
Bologna, N.G.1
Voinnet, O.2
-
9
-
-
0001025261
-
A genetic change associated with the R locus in maize which is directed and potentially reversible
-
Brink, R.A. (1956). A genetic change associated with the R locus in maize which is directed and potentially reversible. Genetics 41: 872–889.
-
(1956)
Genetics
, vol.41
, pp. 872-889
-
-
Brink, R.A.1
-
10
-
-
0000478202
-
Heterochromatic chromosomes in the coccids
-
Brown, S.W., and Nur, U. (1964). Heterochromatic chromosomes in the coccids. Science 145: 130–136.
-
(1964)
Science
, vol.145
, pp. 130-136
-
-
Brown, S.W.1
Nur, U.2
-
11
-
-
84897127295
-
MiRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis
-
Creasey, K.M., Zhai, J., Borges, F., Van Ex, F., Regulski, M., Meyers, B.C., and Martienssen, R.A. (2014). MiRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature 508: 411–415.
-
(2014)
Nature
, vol.508
, pp. 411-415
-
-
Creasey, K.M.1
Zhai, J.2
Borges, F.3
Van Ex, F.4
Regulski, M.5
Meyers, B.C.6
Martienssen, R.A.7
-
12
-
-
84901381126
-
Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome
-
Diez, C.M., Meca, E., Tenaillon, M.I., and Gaut, B.S. (2014). Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome. PLoS Genet. 10: e1004298.
-
(2014)
PLoS Genet
, vol.e1004298
, pp. 10
-
-
Diez, C.M.1
Meca, E.2
Tenaillon, M.I.3
Gaut, B.S.4
-
13
-
-
84866981889
-
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants
-
Du, J., et al. (2012). Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell 151: 167–180.
-
(2012)
Cell
, vol.151
, pp. 167-180
-
-
Du, J.1
-
14
-
-
84884697475
-
Epigenetic and genetic influences on DNA methylation variation in maize populations
-
Eichten, S.R., et al. (2013). Epigenetic and genetic influences on DNA methylation variation in maize populations. Plant Cell 25: 2783–2797.
-
(2013)
Plant Cell
, vol.25
, pp. 2783-2797
-
-
Eichten, S.R.1
-
15
-
-
84872051484
-
Spreading of heterochromatin is limited to specific families of maize retrotransposons
-
Eichten, S.R., Ellis, N.A., Makarevitch, I., Yeh, C.T., Gent, J.I., Guo, L., McGinnis, K.M., Zhang, X., Schnable, P.S., Vaughn, M.W., Dawe, R.K., and Springer, N.M. (2012). Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genet. 8: e1003127.
-
(2012)
PLoS Genet
, vol.8
, pp. 1003127
-
-
Eichten, S.R.1
Ellis, N.A.2
Makarevitch, I.3
Yeh, C.T.4
Gent, J.I.5
Guo, L.6
Mc ginnis, K.M.7
Zhang, X.8
Schnable, P.S.9
Vaughn, M.W.10
Dawe, R.K.11
Springer, N.M.12
-
16
-
-
81755163109
-
Heritable epigenetic variation among maize inbreds
-
Eichten, S.R., et al. (2011). Heritable epigenetic variation among maize inbreds. PLoS Genet. 7: e1002372.
-
(2011)
PLoS Genet
, vol.7
, pp. 1002372
-
-
Eichten, S.R.1
-
17
-
-
84872537101
-
The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution
-
Estep, M.C., DeBarry, J.D., and Bennetzen, J.L. (2013). The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution. Heredity (Edinb.) 110: 194–204.
-
(2013)
Heredity (Edinb.)
, vol.110
, pp. 194-204
-
-
Estep, M.C.1
Debarry, J.D.2
Bennetzen, J.L.3
-
18
-
-
84868534630
-
Presidential address. Transposable elements, epigenetics, and genome evolution
-
Fedoroff, N.V. (2012). Presidential address. Transposable elements, epigenetics, and genome evolution. Science 338: 758–767.
-
(2012)
Science
, vol.338
, pp. 758-767
-
-
Fedoroff, N.V.1
-
19
-
-
84892366110
-
Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity
-
Ferrari, K.J., Scelfo, A., Jammula, S., Cuomo, A., Barozzi, I., Stützer, A., Fischle, W., Bonaldi, T., and Pasini, D. (2014). Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity. Mol. Cell 53: 49–62.
-
(2014)
Mol. Cell
, vol.53
, pp. 49-62
-
-
Ferrari, K.J.1
Scelfo, A.2
Jammula, S.3
Cuomo, A.4
Barozzi, I.5
Stützer, A.6
Fischle, W.7
Bonaldi, T.8
Pasini, D.9
-
20
-
-
84878440106
-
Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales
-
Fincher, J.A., Vera, D.L., Hughes, D.D., McGinnis, K.M., Dennis, J.H., and Bass, H.W. (2013). Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales. Plant Physiol. 162: 1127–1141.
-
(2013)
Plant Physiol
, vol.162
, pp. 1127-1141
-
-
Fincher, J.A.1
Vera, D.L.2
Hughes, D.D.3
Mc ginnis, K.M.4
Dennis, J.H.5
Bass, H.W.6
-
21
-
-
37849021647
-
Heterochromatin and RNAi are required to establish CENP-A chromatin at centromeres
-
Folco, H.D., Pidoux, A.L., Urano, T., and Allshire, R.C. (2008). Heterochromatin and RNAi are required to establish CENP-A chromatin at centromeres. Science 319: 94–97.
-
(2008)
Science
, vol.319
, pp. 94-97
-
-
Folco, H.D.1
Pidoux, A.L.2
Urano, T.3
Allshire, R.C.4
-
22
-
-
0037195153
-
Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate
-
Fransz, P., De Jong, J.H., Lysak, M., Castiglione, M.R., and Schubert, I. (2002). Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate. Proc. Natl. Acad. Sci. USA 99: 14584–14589.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14584-14589
-
-
Fransz, P.1
De Jong, J.H.2
Lysak, M.3
Castiglione, M.R.4
Schubert, I.5
-
23
-
-
84859890589
-
Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants
-
Freeling, M., Woodhouse, M.R., Subramaniam, S., Turco, G., Lisch, D., and Schnable, J.C. (2012). Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants. Curr. Opin. Plant Biol. 15: 131–139.
-
(2012)
Curr. Opin. Plant Biol
, vol.15
, pp. 131-139
-
-
Freeling, M.1
Woodhouse, M.R.2
Subramaniam, S.3
Turco, G.4
Lisch, D.5
Schnable, J.C.6
-
24
-
-
78649525131
-
Inactivation of a DNA methylation pathway in maize reproductive organs results in apomixis-like phenotypes
-
Garcia-Aguilar, M., Michaud, C., Leblanc, O., and Grimanelli, D. (2010). Inactivation of a DNA methylation pathway in maize reproductive organs results in apomixis-like phenotypes. Plant Cell 22: 3249–3267.
-
(2010)
Plant Cell
, vol.22
, pp. 3249-3267
-
-
Garcia-Aguilar, M.1
Michaud, C.2
Leblanc, O.3
Grimanelli, D.4
-
25
-
-
84857812604
-
Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications
-
Gent, J.I., Dong, Y., Jiang, J., and Dawe, R.K. (2012). Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications. Nucleic Acids Res. 40: 1550–1560.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1550-1560
-
-
Gent, J.I.1
Dong, Y.2
Jiang, J.3
Dawe, R.K.4
-
26
-
-
84875971371
-
CHH islands: De novo DNA methylation in neargene chromatin regulation in maize
-
Gent, J.I., Ellis, N.A., Guo, L., Harkess, A.E., Yao, Y., Zhang, X., and Dawe, R.K. (2013). CHH islands: De novo DNA methylation in neargene chromatin regulation in maize. Genome Res. 23: 628–637.
-
(2013)
Genome Res
, vol.23
, pp. 628-637
-
-
Gent, J.I.1
Ellis, N.A.2
Guo, L.3
Harkess, A.E.4
Yao, Y.5
Zhang, X.6
Dawe, R.K.7
-
27
-
-
79951955695
-
Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning
-
Gent, J.I., Schneider, K.L., Topp, C.N., Rodriguez, C., Presting, G.G., and Dawe, R.K. (2011). Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning. Epigenetics Chromatin 4: 3.
-
(2011)
Epigenetics Chromatin
, vol.4
, pp. 3
-
-
Gent, J.I.1
Schneider, K.L.2
Topp, C.N.3
Rodriguez, C.4
Presting, G.G.5
Dawe, R.K.6
-
28
-
-
84876467721
-
Maize chromosomal knobs are located in genedense areas and suppress local recombination
-
Ghaffari, R., Cannon, E.K., Kanizay, L.B., Lawrence, C.J., and Dawe, R.K. (2013). Maize chromosomal knobs are located in genedense areas and suppress local recombination. Chromosoma 122: 67–75.
-
(2013)
Chromosoma
, vol.122
, pp. 67-75
-
-
Ghaffari, R.1
Cannon, E.K.2
Kanizay, L.B.3
Lawrence, C.J.4
Dawe, R.K.5
-
29
-
-
33645702660
-
DNA methyltransferases control telomere length and telomere recombination in mammalian cells. Nat
-
Gonzalo, S., Jaco, I., Fraga, M.F., Chen, T., Li, E., Esteller, M., and Blasco, M.A. (2006). DNA methyltransferases control telomere length and telomere recombination in mammalian cells. Nat. Cell Biol. 8: 416–424.
-
(2006)
Cell Biol
, vol.8
, pp. 416-424
-
-
Gonzalo, S.1
Jaco, I.2
Fraga, M.F.3
Chen, T.4
Li, E.5
Esteller, M.6
Blasco, M.A.7
-
30
-
-
4143099308
-
Mouse centric and pericentric satellite repeats form distinct functional heterochromatin
-
Guenatri, M., Bailly, D., Maison, C., and Almouzni, G. (2004). Mouse centric and pericentric satellite repeats form distinct functional heterochromatin. J. Cell Biol. 166: 493–505.
-
(2004)
J. Cell Biol
, vol.166
, pp. 493-505
-
-
Guenatri, M.1
Bailly, D.2
Maison, C.3
Almouzni, G.4
-
31
-
-
84887077170
-
BS-Seeker2: A versatile aligning pipeline for bisulfite sequencing data
-
Guo, W., Fiziev, P., Yan, W., Cokus, S., Sun, X., Zhang, M.Q., Chen, P.Y., and Pellegrini, M. (2013). BS-Seeker2: A versatile aligning pipeline for bisulfite sequencing data. BMC Genomics 14: 774.
-
(2013)
BMC Genomics
, vol.14
, pp. 774
-
-
Guo, W.1
Fiziev, P.2
Yan, W.3
Cokus, S.4
Sun, X.5
Zhang, M.Q.6
Chen, P.Y.7
Pellegrini, M.8
-
32
-
-
84873027817
-
Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes
-
Han, Y., Qin, S., and Wessler, S.R. (2013). Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes. BMC Genomics 14: 71.
-
(2013)
BMC Genomics
, vol.14
, pp. 71
-
-
Han, Y.1
Qin, S.2
Wessler, S.R.3
-
33
-
-
77954891466
-
The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation
-
Haring, M., Bader, R., Louwers, M., Schwabe, A., van Driel, R., and Stam, M. (2010). The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation. Plant J. 63: 366–378.
-
(2010)
Plant J
, vol.63
, pp. 366-378
-
-
Haring, M.1
Bader, R.2
Louwers, M.3
Schwabe, A.4
Van Driel, R.5
Stam, M.6
-
34
-
-
36248953882
-
Chromatin immunoprecipitation: Optimization, quantitative analysis and data normalization
-
Haring, M., Offermann, S., Danker, T., Horst, I., Peterhansel, C., and Stam, M. (2007). Chromatin immunoprecipitation: Optimization, quantitative analysis and data normalization. Plant Methods 3: 11.
-
(2007)
Plant Methods
, vol.3
, pp. 11
-
-
Haring, M.1
Offermann, S.2
Danker, T.3
Horst, I.4
Peterhansel, C.5
Stam, M.6
-
35
-
-
84901280420
-
Comparative analysis of genome-wide chromosomal histone modification patterns in maize cultivars and their wild relatives
-
He, S., Yan, S., Wang, P., Zhu, W., Wang, X., Shen, Y., Shao, K., Xin, H., Li, S., and Li, L. (2014). Comparative analysis of genome-wide chromosomal histone modification patterns in maize cultivars and their wild relatives. PLoS ONE 9: e97364.
-
(2014)
PLoS ONE
, vol.e97364
, pp. 9
-
-
He, S.1
Yan, S.2
Wang, P.3
Zhu, W.4
Wang, X.5
Shen, Y.6
Shao, K.7
Xin, H.8
Li, S.9
Li, L.10
-
36
-
-
0000251397
-
Das Heterochromatin der Moose
-
Heitz, E. (1928). Das Heterochromatin der Moose. Jahrb. Wiss. Botanik 69: 762–818.
-
(1928)
Jahrb. Wiss. Botanik
, vol.69
, pp. 762-818
-
-
Heitz, E.1
-
37
-
-
84869501857
-
Paramutation: A trans-homolog interaction affecting heritable gene regulation
-
Hollick, J.B. (2012). Paramutation: A trans-homolog interaction affecting heritable gene regulation. Curr. Opin. Plant Biol. 15: 536–543.
-
(2012)
Curr. Opin. Plant Biol
, vol.15
, pp. 536-543
-
-
Hollick, J.B.1
-
38
-
-
84895897598
-
SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation
-
Johnson, L.M., Du, J., Hale, C.J., Bischof, S., Feng, S., Chodavarapu, R.K., Zhong, X., Marson, G., Pellegrini, M., Segal, D.J., Patel, D.J., and Jacobsen, S.E. (2014). SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature 507: 124–128.
-
(2014)
Nature
, vol.507
, pp. 124-128
-
-
Johnson, L.M.1
Du, J.2
Hale, C.J.3
Bischof, S.4
Feng, S.5
Chodavarapu, R.K.6
Zhong, X.7
Marson, G.8
Pellegrini, M.9
Segal, D.J.10
Patel, D.J.11
Jacobsen, S.E.12
-
39
-
-
84878557201
-
Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays
-
Kanizay, L.B., Pyhäjärvi, T., Lowry, E.G., Hufford, M.B., Peterson, D.G., Ross-Ibarra, J., and Dawe, R.K. (2013). Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays. Heredity (Edinb.) 110: 570–577.
-
(2013)
Heredity (Edinb.)
, vol.110
, pp. 570-577
-
-
Kanizay, L.B.1
Pyhäjärvi, T.2
Lowry, E.G.3
Hufford, M.B.4
Peterson, D.G.5
Ross-Ibarra, J.6
Dawe, R.K.7
-
40
-
-
0002569067
-
Dependence of the R-mottled aleurone phenotype in maize on mode of sexual transmission
-
Kermicle, J.L. (1970). Dependence of the R-mottled aleurone phenotype in maize on mode of sexual transmission. Genetics 66: 69–85.
-
(1970)
Genetics
, vol.66
, pp. 69-85
-
-
Kermicle, J.L.1
-
41
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., and Salzberg, S.L. (2013). TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14: R36.
-
(2013)
Genome Biol
, vol.14
, pp. 36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
42
-
-
78651293534
-
Integrating microRNA annotation and deep-sequencing data
-
Kozomara, A., and Griffiths-Jones, S. (2011). miRBase: Integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39: D152–D157.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
43
-
-
84875873698
-
Changes in nucleosome position at transcriptional start sites of specific genes in Zea mays mediator of paramutation1 mutants
-
Labonne, J.D., Dorweiler, J.E., and Mc Ginnis, K.M. (2013). Changes in nucleosome position at transcriptional start sites of specific genes in Zea mays mediator of paramutation1 mutants. Epigenetics 8: 398–408.
-
(2013)
Epigenetics
, vol.8
, pp. 398-408
-
-
Labonne, J.D.1
Dorweiler, J.E.2
Mc Ginnis, K.M.3
-
44
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat
-
Law, J.A., and Jacobsen, S.E. (2010). Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11: 204–220.
-
(2010)
Rev. Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
45
-
-
84879417659
-
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
-
Law, J.A., Du, J., Hale, C.J., Feng, S., Krajewski, K., Palanca, A.M., Strahl, B.D., Patel, D.J., and Jacobsen, S.E. (2013). Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature 498: 385–389.
-
(2013)
Nature
, vol.498
, pp. 385-389
-
-
Law, J.A.1
Du, J.2
Hale, C.J.3
Feng, S.4
Krajewski, K.5
Palanca, A.M.6
Strahl, B.D.7
Patel, D.J.8
Jacobsen, S.E.9
-
46
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754–1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
47
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., and Durbin, R., 1000 Genome Project Data Processing Subgroup. (2009). The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
48
-
-
0037197916
-
A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing
-
Lisch, D., Carey, C.C., Dorweiler, J.E., and Chandler, V.L. (2002). A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing. Proc. Natl. Acad. Sci. USA 99: 6130–6135.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6130-6135
-
-
Lisch, D.1
Carey, C.C.2
Dorweiler, J.E.3
Chandler, V.L.4
-
49
-
-
7144223296
-
Gene action in the X-chromosome of the mouse (Mus musculus L.)
-
Lyon, M.F. (1961). Gene action in the X-chromosome of the mouse (Mus musculus L.). Nature 190: 372–373.
-
(1961)
Nature
, vol.190
, pp. 372-373
-
-
Lyon, M.F.1
-
50
-
-
84903727201
-
Chromatin structure and gene expression changes associated with loss of MOP1 activity in Zea mays
-
Madzima, T.F., Huang, J., and Mc Ginnis, K.M. (2014). Chromatin structure and gene expression changes associated with loss of MOP1 activity in Zea mays. Epigenetics 9: 1047–1059.
-
(2014)
Epigenetics
, vol.9
, pp. 1047-1059
-
-
Madzima, T.F.1
Huang, J.2
Mc Ginnis, K.M.3
-
51
-
-
84876761942
-
Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27
-
Makarevitch, I., Eichten, S.R., Briskine, R., Waters, A.J., Danilevskaya, O.N., Meeley, R.B., Myers, C.L., Vaughn, M.W., and Springer, N.M. (2013). Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27. Plant Cell 25: 780–793.
-
(2013)
Plant Cell
, vol.25
, pp. 780-793
-
-
Makarevitch, I.1
Eichten, S.R.2
Briskine, R.3
Waters, A.J.4
Danilevskaya, O.N.5
Meeley, R.B.6
Myers, C.L.7
Vaughn, M.W.8
Springer, N.M.9
-
52
-
-
35549010557
-
Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2
-
Makarevitch, I., Stupar, R.M., Iniguez, A.L., Haun, W.J., Barbazuk, W.B., Kaeppler, S.M., and Springer, N.M. (2007). Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2. Genetics 177: 749–760.
-
(2007)
Genetics
, vol.177
, pp. 749-760
-
-
Makarevitch, I.1
Stupar, R.M.2
Iniguez, A.L.3
Haun, W.J.4
Barbazuk, W.B.5
Kaeppler, S.M.6
Springer, N.M.7
-
53
-
-
84901041535
-
RNA-directed DNA methylation: An epigenetic pathway of increasing complexity. Nat
-
Matzke, M.A., and Mosher, R.A. (2014). RNA-directed DNA methylation: An epigenetic pathway of increasing complexity. Nat. Rev. Genet. 15: 394–408.
-
(2014)
Rev. Genet
, vol.15
, pp. 394-408
-
-
Matzke, M.A.1
Mosher, R.A.2
-
54
-
-
31844439994
-
Steady-state transposon mutagenesis in inbred maize
-
Mc Carty, D.R., et al. (2005). Steady-state transposon mutagenesis in inbred maize. Plant J. 44: 52–61.
-
(2005)
Plant J
, vol.44
, pp. 52-61
-
-
Mc Carty, D.R.1
-
55
-
-
0000680302
-
Chromosome morphology in Zea mays
-
Mc Clintock, B. (1929). Chromosome morphology in Zea mays. Science 69: 629.
-
(1929)
Science
, vol.69
, pp. 629
-
-
Mc Clintock, B.1
-
56
-
-
72749127435
-
The origin and behavior of mutable loci in maize
-
Mc Clintock, B. (1950). The origin and behavior of mutable loci in maize. Proc. Natl. Acad. Sci. USA 36: 344–355.
-
(1950)
Proc. Natl. Acad. Sci. USA
, vol.36
, pp. 344-355
-
-
Mc Clintock, B.1
-
57
-
-
0020960593
-
Another potential artifact in the study of nucleosome phasing by chromatin digestion with micrococcal nuclease
-
Mc Ghee, J.D., and Felsenfeld, G. (1983). Another potential artifact in the study of nucleosome phasing by chromatin digestion with micrococcal nuclease. Cell 32: 1205–1215.
-
(1983)
Cell
, vol.32
, pp. 1205-1215
-
-
Mc Ghee, J.D.1
Felsenfeld, G.2
-
58
-
-
54449085115
-
Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant
-
Nobuta, K., et al. (2008). Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. Proc. Natl. Acad. Sci. USA 105: 14958–14963.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 14958-14963
-
-
Nobuta, K.1
-
59
-
-
84877040915
-
The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs
-
Nuthikattu, S., McCue, A.D., Panda, K., Fultz, D., DeFraia, C., Thomas, E.N., and Slotkin, R.K. (2013). The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs. Plant Physiol. 162: 116–131.
-
(2013)
Plant Physiol
, vol.162
, pp. 116-131
-
-
Nuthikattu, S.1
Mc cue, A.D.2
Panda, K.3
Fultz, D.4
Defraia, C.5
Thomas, E.N.6
Slotkin, R.K.7
-
60
-
-
14844302397
-
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
-
Onodera, Y., Haag, J.R., Ream, T., Costa Nunes, P., Pontes, O., and Pikaard, C.S. (2005). Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120: 613–622.
-
(2005)
Cell
, vol.120
, pp. 613-622
-
-
Onodera, Y.1
Haag, J.R.2
Ream, T.3
Costa Nunes, P.4
Pontes, O.5
Pikaard, C.S.6
-
61
-
-
0034872980
-
Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation
-
Papa, C.M., Springer, N.M., Muszynski, M.G., Meeley, R., and Kaeppler, S.M. (2001). Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation. Plant Cell 13: 1919–1928.
-
(2001)
Plant Cell
, vol.13
, pp. 1919-1928
-
-
Papa, C.M.1
Springer, N.M.2
Muszynski, M.G.3
Meeley, R.4
Kaeppler, S.M.5
-
62
-
-
84871677774
-
Genomic and gene-level distribution of histone H3 dimethyl lysine-27 (H3K27me2) in Arabidopsis
-
Park, S., Oh, S., and Van Nocker, S. (2012). Genomic and gene-level distribution of histone H3 dimethyl lysine-27 (H3K27me2) in Arabidopsis. PLoS ONE 7: e52855.
-
(2012)
PLoS ONE
, vol.e52855
, pp. 7
-
-
Park, S.1
Oh, S.2
Van Nocker, S.3
-
63
-
-
0016012818
-
The organization of highly repeated DNA sequences in Drosophila melanogaster chromosomes. Cold Spring Harb. Symp. Quant
-
Peacock, W.J., Brutlag, D., Goldring, E., Appels, R., Hinton, C.W., and Lindsley, D.L. (1974). The organization of highly repeated DNA sequences in Drosophila melanogaster chromosomes. Cold Spring Harb. Symp. Quant. Biol. 38: 405–416.
-
(1974)
Biol
, vol.38
, pp. 405-416
-
-
Peacock, W.J.1
Brutlag, D.2
Goldring, E.3
Appels, R.4
Hinton, C.W.5
Lindsley, D.L.6
-
64
-
-
0001578631
-
Highly repeated DNA sequence limited to knob heterochromatin in maize
-
Peacock, W.J., Dennis, E.S., Rhoades, M.M., and Pryor, A.J. (1981). Highly repeated DNA sequence limited to knob heterochromatin in maize. Proc. Natl. Acad. Sci. USA 78: 4490–4494.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 4490-4494
-
-
Peacock, W.J.1
Dennis, E.S.2
Rhoades, M.M.3
Pryor, A.J.4
-
65
-
-
84878903850
-
Intersection of small RNA pathways in Arabidopsis thaliana sub-nuclear domains
-
Pontes, O., Vitins, A., Ream, T.S., Hong, E., Pikaard, C.S., and Costa-Nunes, P. (2013). Intersection of small RNA pathways in Arabidopsis thaliana sub-nuclear domains. PLoS ONE 8: e65652.
-
(2013)
PLoS ONE
, vol.e65652
, pp. 8
-
-
Pontes, O.1
Vitins, A.2
Ream, T.S.3
Hong, E.4
Pikaard, C.S.5
Costa-Nunes, P.6
-
66
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A.R., and Hall, I.M. (2010). BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841–842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
67
-
-
84884695071
-
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
-
Regulski, M., et al. (2013). The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Res. 23: 1651–1662.
-
(2013)
Genome Res
, vol.23
, pp. 1651-1662
-
-
Regulski, M.1
-
68
-
-
79956066320
-
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
-
Roudier, F., et al. (2011). Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J. 30: 1928–1938.
-
(2011)
EMBO J
, vol.30
, pp. 1928-1938
-
-
Roudier, F.1
-
69
-
-
84876859781
-
Dogma derailed: The many influences of RNA on the genome. Mol
-
Sabin, L.R., Delás, M.J., and Hannon, G.J. (2013). Dogma derailed: The many influences of RNA on the genome. Mol. Cell 49: 783–794.
-
(2013)
Cell
, vol.49
, pp. 783-794
-
-
Sabin, L.R.1
Delás, M.J.2
Hannon, G.J.3
-
70
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable, P.S., et al. (2009). The B73 maize genome: Complexity, diversity, and dynamics. Science 326: 1112–1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
71
-
-
70049096990
-
Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin
-
Schoft, V.K., Chumak, N., Mosiolek, M., Slusarz, L., Komnenovic, V., Brownfield, L., Twell, D., Kakutani, T., and Tamaru, H. (2009). Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin. EMBO Rep. 10: 1015–1021.
-
(2009)
EMBO Rep
, vol.10
, pp. 1015-1021
-
-
Schoft, V.K.1
Chumak, N.2
Mosiolek, M.3
Slusarz, L.4
Komnenovic, V.5
Brownfield, L.6
Twell, D.7
Kakutani, T.8
Tamaru, H.9
-
72
-
-
84888001513
-
A new world of Polycombs: Unexpected partnerships and emerging functions. Nat
-
Schwartz, Y.B., and Pirrotta, V. (2013). A new world of Polycombs: Unexpected partnerships and emerging functions. Nat. Rev. Genet. 14: 853–864.
-
(2013)
Rev. Genet
, vol.14
, pp. 853-864
-
-
Schwartz, Y.B.1
Pirrotta, V.2
-
73
-
-
84876533257
-
Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays
-
Sekhon, R.S., Briskine, R., Hirsch, C.N., Myers, C.L., Springer, N.M., Buell, C.R., de Leon, N., and Kaeppler, S.M. (2013). Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. PLoS ONE 8: e61005.
-
(2013)
PLoS ONE
, vol.8
, pp. 61005
-
-
Sekhon, R.S.1
Briskine, R.2
Hirsch, C.N.3
Myers, C.L.4
Springer, N.M.5
Buell, C.R.6
De Leon, N.7
Kaeppler, S.M.8
-
74
-
-
33746450910
-
Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27
-
Shi, J., and Dawe, R.K. (2006). Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27. Genetics 173: 1571–1583.
-
(2006)
Genetics
, vol.173
, pp. 1571-1583
-
-
Shi, J.1
Dawe, R.K.2
-
75
-
-
84875971442
-
The role of the Arabidopsis exosome in siRNA-independent silencing of heterochromatic loci
-
Shin, J.H., Wang, H.L., Lee, J., Dinwiddie, B.L., Belostotsky, D.A., and Chekanova, J.A. (2013). The role of the Arabidopsis exosome in siRNA-independent silencing of heterochromatic loci. PLoS Genet. 9: e1003411.
-
(2013)
PLoS Genet
, vol.9
, pp. 1003411
-
-
Shin, J.H.1
Wang, H.L.2
Lee, J.3
Dinwiddie, B.L.4
Belostotsky, D.A.5
Chekanova, J.A.6
-
76
-
-
84871796810
-
Distinct modes of DNA accessibility in plant chromatin. Nat
-
Shu, H., Wildhaber, T., Siretskiy, A., Gruissem, W., and Hennig, L. (2012). Distinct modes of DNA accessibility in plant chromatin. Nat. Commun. 3: 1281.
-
(2012)
Commun
, vol.3
, pp. 1281
-
-
Shu, H.1
Wildhaber, T.2
Siretskiy, A.3
Gruissem, W.4
Hennig, L.5
-
77
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome. Nat
-
Slotkin, R.K., and Martienssen, R. (2007). Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Genet. 8: 272–285.
-
(2007)
Rev. Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
78
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin, R.K., Vaughn, M., Borges, F., Tanurdzic, M., Becker, J.D., Feijó, J.A., and Martienssen, R.A. (2009). Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461–472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
Tanurdzic, M.4
Becker, J.D.5
Feijó, J.A.6
Martienssen, R.A.7
-
79
-
-
84893716683
-
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
-
Stroud, H., Do, T., Du, J., Zhong, X., Feng, S., Johnson, L., Patel, D.J., and Jacobsen, S.E. (2014). Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat. Struct. Mol. Biol. 21: 64–72.
-
(2014)
Nat. Struct. Mol. Biol
, vol.21
, pp. 64-72
-
-
Stroud, H.1
Do, T.2
Du, J.3
Zhong, X.4
Feng, S.5
Johnson, L.6
Patel, D.J.7
Jacobsen, S.E.8
-
80
-
-
84872614860
-
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
-
Stroud, H., Greenberg, M.V., Feng, S., Bernatavichute, Y.V., and Jacobsen, S.E. (2013). Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell 152: 352–364.
-
(2013)
Cell
, vol.152
, pp. 352-364
-
-
Stroud, H.1
Greenberg, M.V.2
Feng, S.3
Bernatavichute, Y.V.4
Jacobsen, S.E.5
-
81
-
-
84876976472
-
Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain
-
Sun, F., Guo, W., Du, J., Ni, Z., Sun, Q., and Yao, Y. (2013). Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain. Gene 522: 1–7.
-
(2013)
Gene
, vol.522
, pp. 1-7
-
-
Sun, F.1
Guo, W.2
Du, J.3
Ni, Z.4
Sun, Q.5
Yao, Y.6
-
82
-
-
84891713248
-
Epigenomic consequences of immortalized plant cell suspension culture
-
Tanurdzic, M., Vaughn, M.W., Jiang, H., Lee, T.J., Slotkin, R.K., Sosinski, B., Thompson, W.F., Doerge, R.W., and Martienssen, R.A. (2008). Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol. 6: 2880–2895.
-
(2008)
PLoS Biol
, vol.6
, pp. 2880-2895
-
-
Tanurdzic, M.1
Vaughn, M.W.2
Jiang, H.3
Lee, T.J.4
Slotkin, R.K.5
Sosinski, B.6
Thompson, W.F.7
Doerge, R.W.8
Martienssen, R.A.9
-
83
-
-
0024570164
-
Micrococcal nuclease: Its specificity and use for chromatin analysis
-
Telford, D.J., and Stewart, B.W. (1989). Micrococcal nuclease: Its specificity and use for chromatin analysis. Int. J. Biochem. 21: 127–137.
-
(1989)
Int. J. Biochem
, vol.21
, pp. 127-137
-
-
Telford, D.J.1
Stewart, B.W.2
-
84
-
-
79960095966
-
Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biol
-
Tenaillon, M.I., Hufford, M.B., Gaut, B.S., and Ross-Ibarra, J. (2011). Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biol. Evol. 3: 219–229.
-
(2011)
Evol
, vol.3
, pp. 219-229
-
-
Tenaillon, M.I.1
Hufford, M.B.2
Gaut, B.S.3
Ross-Ibarra, J.4
-
85
-
-
75149135277
-
G+C content dominates intrinsic nucleosome occupancy
-
Tillo, D., and Hughes, T.R. (2009). G+C content dominates intrinsic nucleosome occupancy. BMC Bioinformatics 10: 442.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 442
-
-
Tillo, D.1
Hughes, T.R.2
-
86
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with Top Hat and Cufflinks
-
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D.R., Pimentel, H., Salzberg, S.L., Rinn, J.L., and Pachter, L. (2012). Differential gene and transcript expression analysis of RNA-seq experiments with Top Hat and Cufflinks. Nat. Protoc. 7: 562–578.
-
(2012)
Nat. Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
87
-
-
79953758929
-
The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis
-
Veiseth, S.V., Rahman, M.A., Yap, K.L., Fischer, A., Egge-Jacobsen, W., Reuter, G., Zhou, M.M., Aalen, R.B., and Thorstensen, T. (2011). The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis. PLoS Genet. 7: e1001325.
-
(2011)
PLoS Genet
, vol.e1001325
, pp. 7
-
-
Veiseth, S.V.1
Rahman, M.A.2
Yap, K.L.3
Fischer, A.4
Egge-Jacobsen, W.5
Reuter, G.6
Zhou, M.M.7
Aalen, R.B.8
Thorstensen, T.9
-
88
-
-
84879629508
-
RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis
-
Vu, T.M., Nakamura, M., Calarco, J.P., Susaki, D., Lim, P.Q., Kinoshita, T., Higashiyama, T., Martienssen, R.A., and Berger, F. (2013). RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development 140: 2953–2960.
-
(2013)
Development
, vol.140
, pp. 2953-2960
-
-
Vu, T.M.1
Nakamura, M.2
Calarco, J.P.3
Susaki, D.4
Lim, P.Q.5
Kinoshita, T.6
Higashiyama, T.7
Martienssen, R.A.8
Berger, F.9
-
89
-
-
0028031830
-
RNA-directed de novo methylation of genomic sequences in plants
-
Wassenegger, M., Heimes, S., Riedel, L., and Sänger, H.L. (1994). RNA-directed de novo methylation of genomic sequences in plants. Cell 76: 567–576.
-
(1994)
Cell
, vol.76
, pp. 567-576
-
-
Wassenegger, M.1
Heimes, S.2
Riedel, L.3
Sänger, H.L.4
-
90
-
-
84896288527
-
Dicer-like 3 produces transposable element-associated 24-nucleotide siRNAs that control agricultural traits in rice
-
Wei, L., Gu, L., Song, X., Cui, X., Lu, Z., Zhou, M., Wang, L., Hu, F., Zhai, J., Meyers, B.C., and Cao, X. (2014). Dicer-like 3 produces transposable element-associated 24-nucleotide siRNAs that control agricultural traits in rice. Proc. Natl. Acad. Sci. USA 111: 3877–3882.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 3877-3882
-
-
Wei, L.1
Gu, L.2
Song, X.3
Cui, X.4
Lu, Z.5
Zhou, M.6
Wang, L.7
Hu, F.8
Zhai, J.9
Meyers, B.C.10
Cao, X.11
-
91
-
-
73649146539
-
Maize centromere structure and evolution: Sequence analysis of centromeres 2 and 5 reveals dynamic loci shaped primarily by retrotransposons
-
Wolfgruber, T.K., et al. (2009). Maize centromere structure and evolution: Sequence analysis of centromeres 2 and 5 reveals dynamic loci shaped primarily by retrotransposons. PLoS Genet. 5: e1000743.
-
(2009)
PLoS Genet
, vol.e1000743
, pp. 5
-
-
Wolfgruber, T.K.1
-
92
-
-
33750244877
-
Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors
-
Woodhouse, M.R., Freeling, M., and Lisch, D. (2006). Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors. PLoS Biol. 4: e339.
-
(2006)
PLoS Biol
, vol.e339
, pp. 4
-
-
Woodhouse, M.R.1
Freeling, M.2
Lisch, D.3
-
93
-
-
84875741680
-
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
-
Zemach, A., Kim, M.Y., Hsieh, P.H., Coleman-Derr, D., Eshed-Williams, L., Thao, K., Harmer, S.L., and Zilberman, D. (2013). The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 153: 193–205.
-
(2013)
Cell
, vol.153
, pp. 193-205
-
-
Zemach, A.1
Kim, M.Y.2
Hsieh, P.H.3
Coleman-Derr, D.4
Eshed-Williams, L.5
Thao, K.6
Harmer, S.L.7
Zilberman, D.8
-
94
-
-
84872781738
-
RNA polymerase V targets transcriptional silencing components to promoters of protein-coding genes
-
Zheng, Q., Rowley, M.J., Böhmdorfer, G., Sandhu, D., Gregory, B.D., and Wierzbicki, A.T. (2012). RNA polymerase V targets transcriptional silencing components to promoters of protein-coding genes. Plant J.
-
(2012)
Plant J
-
-
Zheng, Q.1
Rowley, M.J.2
Böhmdorfer, G.3
Sandhu, D.4
Gregory, B.D.5
Wierzbicki, A.T.6
-
95
-
-
84866117758
-
DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons
-
Zhong, X., Hale, C.J., Law, J.A., Johnson, L.M., Feng, S., Tu, A., and Jacobsen, S.E. (2012). DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nat. Struct. Mol. Biol. 19: 870–875.
-
(2012)
Nat. Struct. Mol. Biol
, vol.19
, pp. 870-875
-
-
Zhong, X.1
Hale, C.J.2
Law, J.A.3
Johnson, L.M.4
Feng, S.5
Tu, A.6
Jacobsen, S.E.7
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