Nocardiopsis algeriensis sp. nov., an alkalitolerant actinomycete isolated from Saharan soil

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 107, Issue 2, 2015, Pages 313-320

  Bouras, Noureddine ^a,b   Meklat, Atika ^a,c   Zitouni, Abdelghani ^a   Mathieu, Florence ^d   Schumann, Peter ^e   Spröer, Cathrin ^e   Sabaou, Nasserdine ^a   Klenk, Hans Peter ^e  

^a Ecole Normale Superieure de Kouba   (Algeria)

^b UNIVERSITY OF GHARDAIA   (Algeria)

^c UNIVERSITY OF BLIDA   (Algeria)

^d UNIVERSITÉ DE TOULOUSE   (France)

^e LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

Alkalitolerant actinomycete; Nocardiopsis; Nocardiopsisalgeriensis sp. nov; Polyphasic taxonomy; Saharan soil

Indexed keywords

CARDIOLIPIN; DIAMINO ACID; FATTY ACID; GENOMIC DNA; MENAQUINONE; MENAQUINONE 11; PEPTIDOGLYCAN; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLMETHYLETHANOLAMINE; PHOSPHOLIPID; RNA 16S; SODIUM CHLORIDE; UNCLASSIFIED DRUG; BACTERIAL DNA; DIAMINOPIMELIC ACID; FARNOQUINONE; RIBOSOME DNA;

16S RRNA GENE; ACTINOBACTERIA; ALGERIA; ARTICLE; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONCENTRATION RESPONSE; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENETIC SIMILARITY; GENOTYPE PHENOTYPE CORRELATION; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW SPECIES; NOCARDIOPSIS AEGYPTIA; NOCARDIOPSIS ALBA; NOCARDIOPSIS ALGERIENSIS; NOCARDIOPSIS ARVANDICA; NOCARDIOPSIS LUCENTENSIS; NOCARDIOPSIS SINUSPERSICI; NONHUMAN; PH; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SALT TOLERANCE; SEQUENCE ALIGNMENT; SOIL MICROFLORA; TYPE STRAIN; AFRICA; CELL WALL; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; CYTOLOGY; CYTOSOL; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PHYSIOLOGY; SCANNING ELECTRON MICROSCOPY; TEMPERATURE;

ACTINOBACTERIA; AFRICA, NORTHERN; BACTERIAL TYPING TECHNIQUES; CELL WALL; CLUSTER ANALYSIS; CYTOSOL; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HYDROGEN-ION CONCENTRATION; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL MICROBIOLOGY; SPORES, BACTERIAL; TEMPERATURE; VITAMIN K 2;

EID: 84922070979     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-014-0329-7     Document Type: Article

References (31)

1. Becker B, Lechevalier MP, Gordon RE, Lechevalier HA (1964) Rapid differentiation between Nocardia and Streptomyces by paper chromatography of whole-cell hydrolysates. J Appl Microbiol 12:421–423
2. Cashion P, Hodler-Franklin MA, McCully J, Franklin M (1977) A rapid method for base ratio determination of bacterial DNA. Anal Biochem 81:461–466
3. Chun J, Bae KS, Moon EY, Jung SO, Lee HK, Kim SJ (2000) Nocardiopsis kunsanensis sp. nov. a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50:1909–1913
4. Coenye T, Falsen E, Vancanneyt M, Hoste B, Govan JR, Kersters K, Vandamme P (1999) Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. Int J Syst Bacteriol 49:405–413
5. De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142
6. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
7. Goodfellow M (1971) Numerical taxonomy of some nocardioform bacteria. J Gen Microbiol 69:33–90
8. Gordon RE, Barnett DA (1977) Resistance to rifampicin and lysozyme of strains of some species of Mycobacterium and Nocardia as a taxonomic tool. Int J Syst Bacteriol 27:176–178
9. Gordon RE, Barnett DA, Handerhan JE, Pang CHN (1974) Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24:54–63
10. Grund E, Kroppenstedt RM (1990) Chemotaxonomy and numerical taxonomy of the genus Nocardiopsis. Int J Syst Bacteriol 40:5–11
11. Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192
12. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism, vol 3. Academic Press, New York, pp 21–132
13. Kelly KL, Judd DB (1976) Color. Universal language and dictionary of names (National Bureau of Standards special publication 440). US Department of Commerce, Washington, DC
14. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
15. Kroppenstedt RM (1982) Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5:2359–2367
16. Kroppenstedt RM (1985) Fatty acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 173–179
17. Kroppenstedt RM (1992) The genus Nocardiopsis. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH (eds) The Prokaryotes, 2nd edn. Springer, New York, pp 1139–1156
18. Kroppenstedt RM, Evtushenko LI (2006) The family Nocardiopsaceae. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The Prokaryotes: a Handbook on the Biology of Bacteria, vol 3, 3rd edn. Springer, New York, pp 754–795
19. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) CLUSTALW and CLUSTALX version 2. Bioinformatics 23:2947–2948
20. Lechevalier MP, Lechevalier HA (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 34:435–444
21. Lechevalier MP, de Bièvre C, Lechevalier HA (1977) Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5:249–260
22. Marchal N, Bourdon JL, Richard CL (1987) Les milieux de culture pour l’isolement et l’identification biochimique des bactéries. Doin Press, Paris
23. Meyer J (1976) Nocardiopsis, a new genus of the order Actinomycetales. Int J Syst Bacteriol 26:487–493
24. Minnikin DE, O’Donnell AG (1984) Actinomycete envelope lipid and peptidoglycan composition. In: Goodfellow M, Mordarski M, Williams ST (eds) The biology of the actinomycetes. Academic Press, London, pp 337–388
25. Minnikin DE, Patel PV, Alshamaony L, Goodfellow M (1977) Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104–117
26. Rainey FA, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E (1996) The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46:1088–1092
27. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
28. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. Technical note 101. Microbial ID, Newark
29. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340
30. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
31. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Trüper HG (1987) International committee on systematic bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematic. Int J Syst Bacteriol 37:463–464