D-Xylose assimilation via the Weimberg pathway by solvent-tolerant Pseudomonas taiwanensis VLB120

Environmental Microbiology

Volumn 17, Issue 1, 2015, Pages 156-170

  Köhler, Kirsten A K ^a   Blank, Lars M ^b   Frick, Oliver ^a   Schmid, Andreas ^a  

^a TU DORTMUND UNIVERSITY   (Germany)

^b RWTH AACHEN UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

PSEUDOMONAS;

GLUCOSE; XYLOSE;

GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PSEUDOMONAS;

GLUCOSE; METABOLIC NETWORKS AND PATHWAYS; PSEUDOMONAS; XYLOSE;

EID: 84921862743     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12537     Document Type: Article

References (43)

1. Bennett, B.D., Kimball, E.H., Gao, M., Osterhout, R., Van Dien, S.J., and Rabinowitz, J.D. (2009) Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nat Chem Biol 5: 593-599.
2. Blank, L.M., Ionidis, G., Ebert, B.E., Bühler, B., and Schmid, A. (2008) Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase. FEBS J 275: 5173-5190.
3. Bruinenberg, P.M., Debot, P.H.M., Vandijken, J.P., and Scheffers, W.A. (1983) The role of redox balances in the anaerobic fermentation of xylose by yeasts. Eur J Appl Microbiol Biotechnol 18: 287-292.
4. Dahms, A.S. (1974) 3-Deoxy-D-pentulosonic acid aldolase and its role in a new pathway of D-xylose degradation. Biochem Biophys Res Commun 60: 1433-1439.
5. Dien, B., Iten, L., and Bothast, R. (1999) Conversion of corn fiber to ethanol by recombinant E.coli strain FBR3. J Ind Microbiol Biotechnol 22: 575-581.
6. Ebert, B.E., Kurth, F., Grund, M., Blank, L.M., and Schmid, A. (2011) Response of Pseudomonas putida KT2440 to increased NADH and ATP demand. Appl Environ Microbiol 77: 6597-6605.
7. Fossitt, D., Mortlock, R.P., Anderson, R.L., and Wood, W.A. (1964) Pathways of L-arabitol and xylitol metabolism in Aerobacter aerogenes. J Biol Chem 239: 2110-2115.
8. Gross, R., Lang, K., Bühler, K., and Schmid, A. (2010) Characterization of a biofilm membrane reactor and its prospects for fine chemical synthesis. Biotechnol Bioeng 105: 705-717.
9. Hahn-Hagerdal, B., Karhumaa, K., Jeppsson, M., and Gorwa-Grauslund, M.F. (2007) Metabolic engineering for pentose utilization in Saccharomyces cerevisiae. Adv Biochem Eng Biotechnol 108: 147-177.
10. Halan, B., Schmid, A., and Bühler, K. (2011) Real-time solvent tolerance analysis of Pseudomonas sp. strain VLB120ΔC catalytic biofilms. Appl Environ Microbiol 77: 1563-1571.
11. Han, J.H., Park, J.Y., Yoo, K.S., Kang, H.W., Choi, G.W., Chung, B.W., and Min, J. (2011) Effect of glucose on xylose utilization in Saccharomyces cerevisiae harboring the xylose reductase gene. Arch Microbiol 193: 335-340.
12. Hardy, G.P., Teixeira de Mattos, M.J., and Neijssel, O.M. (1993) Energy conservation by pyrroloquinoline quinol-linked xylose oxidation in Pseudomonas putida NCTC 10936 during carbon-limited growth in chemostat culture. FEMS Microbiol Lett 107: 107-110.
13. Heyland, J., Fu, J.A., and Blank, L.M. (2009) Correlation between TCA cycle flux and glucose uptake rate during respiro-fermentative growth of Saccharomyces cerevisiae. Microbiology 155: 3827-3837.
14. +-dependent xylitol dehydrogenase. J Biotechnol 165: 153-156.
15. Köhler, K.A.K., Rückert, C., Schatschneider, S., Vorhölter, F.J., Szczepanowski, R., Blank, L.M., etal. (2013) Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. J Biotechnol 168: 729-730.
16. Kuyper, M., Harhangi, H.R., Stave, A.K., Winkler, A.A., Jetten, M.S., de Laat, W.T., etal. (2003) High-level functional expression of a fungal xylose isomerase: the key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae? FEMS Yeast Res 4: 69-78.
17. Lang, K., Zierow, J., Bühler, K., and Schmid, A. (2014) Metabolic engineering of Pseudomonas sp. strain VLB120 as platform biocatalyst for the production of isobutyric acid and other secondary metabolites. Microb Cell Fact 13: 2.
18. Le Meur, S., Zinn, M., Egli, T., Thony-Meyer, L., and Ren, Q. (2012) Production of medium-chain-length polyhydroxyalkanoates by sequential feeding of xylose and octanoic acid in engineered Pseudomonas putida KT2440. BMC Biotechnol 12: 53.
19. Lee, J. (1997) Biological conversion of lignocellulosic biomass to ethanol. J Biotechnol 56: 1-24.
20. Lien, O.G. (1959) Determination of gluconolactone, galactonolactone, and their free acids by the hydroxamate method. Anal Chem 31: 1363-1366.
21. Martinez-Garcia, E., and de Lorenzo, V. (2011) Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ Microbiol 13: 2702-2716.
22. Meijnen, J.P., de Winde, J.H., and Ruijssenaars, H.J. (2008) Engineering Pseudomonas putida S12 for efficient utilization of D-xylose and L-arabinose. Appl Environ Microbiol 74: 5031-5037.
23. Meijnen, J.P., de Winde, J.H., and Ruijssenaars, H.J. (2009) Establishment of oxidative D-xylose metabolism in Pseudomonas putida S12. Appl Environ Microbiol 75: 2784-2791.
24. Meijnen, J.P., de Winde, J.H., and Ruijssenaars, H.J. (2012) Metabolic and regulatory rearrangements underlying efficient D-xylose utilization in engineered Pseudomonas putida S12. J Biol Chem 287: 14606-14614.
25. Moret, V., and Sperti, S. (1962) Pentose metabolism by cell-free extracts of Oospora lactis. Arch Biochem Biophys 98: 124-127.
26. Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., and Kanehisa, M. (1999) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 27: 29-34.
27. Park, J.B., Bühler, B., Panke, S., Witholt, B., and Schmid, A. (2007) Carbon metabolism and product inhibition determine the epoxidation efficiency of solvent-tolerant Pseudomonas sp. strain VLB120ΔC. Biotechnol Bioeng 98: 1219-1229.
28. 13C-based metabolic flux analysis. Microb Cell Fact 8: 25.
29. Sambrook, J., and Russel, D.W. (2001) Molecular Cloning - A Laboratory Manual. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
30. Schneider, J., Vorhölter, F.J., Trost, E., Blom, J., Musa, Y.R., Neuweger, H., etal. (2010) CARMEN - comparative analysis and in silico reconstruction of organism-specific metabolic networks. Genet Mol Res 9: 1660-1672.
31. Sonderegger, M., and Sauer, U. (2003) Evolutionary engineering of Saccharomyces cerevisiae for anaerobic growth on xylose. Appl Environ Microbiol 69: 1990-1998.
32. Svetlitchnyi, V.A., Kensch, O., Falkenhan, D.A., Korseska, S.G., Lippert, N., Prinz, M., etal. (2013) Single-step ethanol production from lignocellulose using novel extremely thermophilic bacteria. Biotechnol Biofuels 6: 31.
33. 13C-NMR, MS and metabolic flux balancing in biotechnology research. Q Rev Biophys 31: 41-106.
34. 13C flux analysis: mass isotope correction, data consistency checking, and precursor relationships. Biotechnol Bioeng 85: 259-268.
35. Walfridsson, M., Hallborn, J., Penttila, M., Keranen, S., and Hahn-Hagerdal, B. (1995) Xylose-metabolizing Saccharomyces cerevisiae strains overexpressing the TKL1 and TAL1 genes encoding the pentose phosphate pathway enzymes transketolase and transaldolase. Appl Environ Microbiol 61: 4184-4190.
36. Wang, P.Y., and Schneider, H. (1980) Growth of yeasts on D-xylulose 1. Can J Microbiol 26: 1165-1168.
37. Weber, C., Farwick, A., Benisch, F., Brat, D., Dietz, H., Subtil, T., and Boles, E. (2010) Trends and challenges in the microbial production of lignocellulosic bioalcohol fuels. Appl Microbiol Biotechnol 87: 1303-1315.
38. Weimberg, R. (1961) Pentose oxidation by Pseudomonas fragi. J Biol Chem 236: 629-635.
39. Wittmann, C. (2007) Fluxome analysis using GC-MS. Microb Cell Fact 6: 6.
40. Wittmann, C., and Heinzle, E. (2001) Modeling and experimental design for metabolic flux analysis of lysine-producing Corynebacteria by mass spectrometry. Metab Eng 3: 173-191.
41. Yanase, H., Miyawaki, H., Sakurai, M., Kawakami, A., Matsumoto, M., Haga, K., etal. (2012) Ethanol production from wood hydrolysate using genetically engineered Zymomonas mobilis. Appl Microbiol Biotechnol 94: 1667-1678.
42. 13C metabolic flux analysis using systems parametrized by compactification. BMC Syst Biol 2: 29.
43. Zheng, R., Zhang, H., Zhao, J., Lei, M., and Huang, H. (2011) Direct and simultaneous determination of representative byproducts in a lignocellulosic hydrolysate of corn stover via gas chromatography-mass spectrometry with a Deans switch. J Chromatogr A 1218: 5319-5327.