A national facility for biological cryo-electron microscopy

Acta Crystallographica Section D: Biological Crystallography

Volumn 71, Issue , 2015, Pages 127-135

  Saibil, Helen R ^a   Grünewald, Kay ^b   Stuart, David I ^b,c  

^a UNIVERSITY OF LONDON   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c DIAMOND LIGHT SOURCE LTD   (United Kingdom)

Author keywords

three dimensional electron microscopy Crystallography and complementary methods

Indexed keywords

AUTOMATION; CRYOELECTRON MICROSCOPY; CRYSTALLOGRAPHY; GREAT BRITAIN; ORGANIZATION; PROCEDURES;

ACADEMIES AND INSTITUTES; AUTOMATION; CRYOELECTRON MICROSCOPY; CRYSTALLOGRAPHY; GREAT BRITAIN;

EID: 84921760682     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S1399004714025280     Document Type: Article

References (54)

1. Al-Amoudi, A., Díez, D. C., Betts, M. J. & Frangakis, A. S. (2007). Nature (London), 450, 832-837
2. Amunts, A., Brown, A., Bai, X.-C., Llácer, J. L., Hussain, T., Emsley, P., Long, F., Murshudov, G., Scheres, S. H. W. & Ramakrishnan, V. (2014). Science, 343, 1485-1489
3. Bartesaghi, A., Lecumberry, F., Sapiro, G. & Subramaniam, S. (2012). Structure, 20, 2003-2013
4. Chang, Y.-W., Chen, Y., Tocheva, E. I., Treuner-Lange, A., Löbach, S., Søgaard-Andersen, L. & Jensen, G. (2014). Nature Methods, 11, 737-739
5. Chen, S., McMullan, G., Faruqi, A. R., Murshudov, G. N., Short, J. M., Scheres, S. H. W. & Henderson, R. (2013). Ultramicroscopy, 135, 24-35
6. Cheng, Y. & Walz, T. (2009). Annu. Rev. Biochem. 78, 723-742
7. Clare, D. K., Bakkes, P. J., van Heerikhuizen, H., van der Vies, S.M. & Saibil, H. R. (2009). Nature (London), 457, 107-110
8. Clare, D. K., Vasishtan, D., Stagg, S., Quispe, J., Farr, G. W., Topf, M., Horwich, A. L. & Saibil, H. R. (2012). Cell, 149, 113-123
9. Dai, W., Fu, C., Raytcheva, D., Flanagan, J., Khant, H. A., Liu, X., Rochat, R. H., Haase-Pettingell, C., Piret, J., Ludtke, S. J., Nagayama, K., Schmid, M. F., King, J. A. & Chiu, W. (2013). Nature (London), 502, 707-710
10. Driel, L. F. van, Valentijn, J. A., Valentijn, K. M., Koning, R. I. & Koster, A. J. (2009). Eur. J. Cell Biol. 88, 669-684
11. Dubochet, J., Adrian, M., Chang, J.-J., Homo, J.-C., Lepault, J., McDowall, A. W. & Schultz, P. (1988). Q. Rev. Biophys. 21, 129-228
12. Duke, E. M. H. & Johnson, L. N. (2010). Proc. R. Soc. Lond. A Math. Phys. Sci. 466, 3421-3452
13. Faas, F. G., Bárcena, M., Agronskaia, A. V., Gerritsen, H. C., Moscicka, K. B., Diebolder, C. A., van Driel, L. F., Limpens, R. W., Bos, E., Ravelli, R. B. G., Koning, R. I. & Koster, A. J. (2013). J. Struct. Biol. 181, 283-290
14. Fischer, N., Konevega, A. L., Wintermeyer, W., Rodnina, M. V. & Stark, H. (2010). Nature (London), 466, 329-333
15. Frank, J. (2002). Annu. Rev. Biophys. Biomol. Struct. 31, 303-319
16. Frank, J. (2006). Three-dimensional Electron Microscopy of Macromolecular Assemblies. Oxford University Press
17. Grünewald, K., Desai, P., Winkler, D. C., Heymann, J. B., Belnap, D. M., Baumeister, W. & Steven, A. C. (2003). Science, 302, 1396-1398
18. Hagen, C., Guttmann, P., Klupp, B., Werner, S., Rehbein, S., Mettenleiter, T. C., Schneider, G. & Grünewald, K. (2012). J. Struct. Biol. 177, 193-201
19. Heel, M. van, Gowen, B., Matadeen, R., Orlova, E. V., Finn, R., Pape, T., Cohen, D., Stark, H., Schmidt, R., Schatz, M. & Patwardhan, A. (2000). Q. Rev. Biophys. 33, 307-369
20. Henderson, R. (2004). Q. Rev. Biophys. 37, 3-13
21. Henderson, R. et al. (2012). Structure, 20, 205-214
22. Henderson, R. & Unwin, P. N. (1975). Nature (London), 257, 28-32
23. Jensen, G. J. (2010a). Editor. Methods In Enzymology, vol. 481, Cryo-EM Part A: Sample Preparation and Data Collection. San Diego: Academic Press
24. Jensen, G. J. (2010b). Editor. Methods In Enzymology, vol. 482, Cryo-EM Part B: 3-D Reconstruction. San Diego: Academic Press
25. Jensen, G. J. (2010c). Editor. Methods In Enzymology, vol. 483, Cryo-EM Part C: Analyses, Interpretation and Case Studies. San Diego: Academic Press
26. Kastner, B. et al. (2008). Nature Methods, 5, 53-55
27. Kaufmann, R., Schellenberger, P., Seiradake, E., Dobbie, I. M., Jones, E. Y., Davis, I., Hagen, C. & Grünewald, K. (2014). Nano Lett. 14, 4171-4175
28. Lander, G. C., Stagg, S. M., Voss, N. R., Cheng, A., Fellmann, D., Pulokas, J., Yoshioka, C., Irving, C., Mulder, A., Lau, P. W., Lyumkis, D., Potter, C. S. & Carragher, B. (2009). J. Struct. Biol. 166, 95-102
29. Li, X., Mooney, M., Zheng, S., Booth, C. R., Braunfeld, M. B., Gubbens, S., Agard, D. A. & Cheng, Y. (2013). Nature Methods, 10, 584-590
30. Liao, M., Cao, E., Julius, D. & Cheng, Y. (2013). Nature (London), 504, 107-112
31. Lučič, V., Rigort, A. & Baumeister, W. (2013). J. Cell Biol. 202, 407-419
32. Marko, M., Hsieh, C., Moberlychan, W., Mannella, C. A. & Frank, J. (2006). J. Microsc. 222, 42-47
33. Mastronarde, D. N. (2005). J. Struct. Biol. 152, 36-51
34. McMullan, G., Faruqi, A. R., Clare, D. & Henderson, R. (2014). Comparison of Optimal Performance at 300 keV of Three Direct Electron Detectors for Use in Low Dose Electron Microscopy. http://arxiv.org/abs/1406.1389
35. Moriarty, N. W., Tronrud, D. E., Adams, P. D. & Karplus, P. A. (2014). FEBS J. 281, 4061-4071
36. Murshudov, G. N., Skubák, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F. & Vagin, A. A. (2011). Acta Cryst. D67, 355-367
37. Nannenga, B. L., Shi, D., Leslie, A. G. W. & Gonen, T. (2014). Nature Methods, 11, 927-930
38. Orlova, E. V. & Saibil, H. R. (2011). Chem. Rev. 111, 7710-7748
39. Patwardhan, A. et al. (2014). Nature Struct. Mol. Biol. 19, 1203-1207
40. Perkovic, M., Kunz, M., Endesfelder, U., Bunse, S., Wigge, C., Yu, Z., Hodirnau, V. V., Scheffer, M. P., Seybert, A., Malkusch, S., Schuman, E. M., Heilemann, M. & Frangakis, A. S. (2014). J. Struct. Biol. 186, 205-213
41. Quispe, J., Damiano, J., Mick, S. E., Nackashi, D. P., Fellmann, D., Ajero, T. G., Carragher, B. & Potter, C. S. (2007). Microsc. Microanal. 13, 365-371
42. Rigort, A., Bauerlein, F. J. B., Villa, E., Eibauer, M., Laugks, T., Baumeister, W. & Plitzko, J. M. (2012). Proc. Natl Acad. Sci. USA, 109, 4449-4454
43. Ruskin, S., Yu, Z. & Grigorieff, N. (2013). J. Struct. Biol. 184, 385-393
44. Russel, D., Lasker, K., Webb, B., Velázquez-Muriel, J., Tjioe, E., Schneidman-Duhovny, D., Peterson, B. & Sali, A. (2012). PLoS Biol. 10, e1001244
45. Scheres, S. H. W. (2012). J. Mol. Biol. 415, 406-418
46. Schur, F. K. M., Hagen, W., de Marco, A. & Briggs, J. A. G. (2013). J. Struct. Biol. 184, 394-400
47. Shi, D., Nannega, B. L., Iadanza, M. G. & Gonen, T. (2013). Elife, 2, e01345
48. Suloway, C., Pulokas, J., Fellmann, D., Cheng, A., Guerra, F., Quispe, J., Stagg, S., Potter, C. S. & Carragher, B. (2005). J. Struct. Biol. 151, 41-60
49. Wang, P., Behan, G., Kirkland, A. I., Nellist, P. D., Cosgriff, E. C., D'Alfonso, A. J., Morgan, A. J., Allen, L. J., Hashimoto, A., Takeguchi, M., Mitsuishi, K. & Shimojo, M. (2011). Ultramicroscopy, 111, 877-886
50. Winter, G. & McAuley, K. E. (2011). Methods, 55, 81-93
51. Wood, C., Burnley, T., Patwardhan, A., Scheres, S., Topf, M., Roseman, A. & Winn, M. (2015). Acta Cryst. D71, 123-126
52. Zeev-Ben-Mordehai, T., Hagen, C. & Grünewald, K. (2014). Virology, 5, 42-49
53. Zhang, X., Jin, L., Fang, Q., Hui, W. H. & Zhou, Z. H. (2010). Cell, 141, 472-482
54. Zhang, W., Kimmel, M., Spahn, C. M. T. & Penczek, P. A. (2008). Structure, 16, 1770-1776