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Volumn 517, Issue 7532, 2015, Pages 99-103

Native structure of photosystem II at 1.95A° resolution viewed by femtosecond X-ray pulses

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C OXIDASE; DIMER; MANGANESE; OXYGEN; WATER; PHOTOSYSTEM II;

EID: 84921499454     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13991     Document Type: Article
Times cited : (1025)

References (35)
  • 1
    • 85028099698 scopus 로고    scopus 로고
    • Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9A?
    • Umena, Y., Kawakami, K., Shen, J.-R. & Kamiya, N. Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9A? . Nature 473, 55-60 (2011).
    • (2011) Nature , vol.473 , pp. 55-60
    • Umena, Y.1    Kawakami, K.2    Shen, J.-R.3    Kamiya, N.4
  • 2
    • 24744444728 scopus 로고    scopus 로고
    • X-ray damage to theMn4Cacomplex in single crystals ofphotosystem II: A case study for metalloprotein crystallography
    • Yano, J. et al. X-ray damage to theMn4Cacomplex in single crystals ofphotosystem II: a case study for metalloprotein crystallography. Proc. Natl Acad. Sci. USA 102, 12047-12052 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 12047-12052
    • Yano, J.1
  • 3
    • 27544469333 scopus 로고    scopus 로고
    • High-resolution Mn EXAFS of the oxygen-evolving complex in photosystem II: Structural implications for the Mn4Ca cluster
    • Yano, J. et al. High-resolution Mn EXAFS of the oxygen-evolving complex in photosystem II: structural implications for the Mn4Ca cluster. J. Am. Chem. Soc. 127, 14974-14975 (2005).
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 14974-14975
    • Yano, J.1
  • 4
    • 33750696356 scopus 로고    scopus 로고
    • Where water is oxidized to dioxygen: Structure of the photosynthetic Mn4Ca cluster
    • Yano, J. et al. Where water is oxidized to dioxygen: structure of the photosynthetic Mn4Ca cluster. Science 314, 821-825 (2006).
    • (2006) Science , vol.314 , pp. 821-825
    • Yano, J.1
  • 5
    • 38049016877 scopus 로고    scopus 로고
    • The manganese complex of photosystemII in its reaction cycle-basic framework and possible realization at the atomic level
    • Dau, H. & Haumann, M. The manganese complex of photosystemII in its reaction cycle-basic framework and possible realization at the atomic level. Coord. Chem. Rev. 252, 273-295 (2008).
    • (2008) Coord. Chem. Rev. , vol.252 , pp. 273-295
    • Dau, H.1    Haumann, M.2
  • 6
    • 38949209552 scopus 로고    scopus 로고
    • On the structure of themanganese complex of photosystem II: Extended-range EXAFS data and specific atomic-resolution models for four S-states
    • Dau, H., Grundmeier, A., Loja, P.& Haumann, M.Onthe structure of themanganese complex of photosystem II: extended-range EXAFS data and specific atomic-resolution models for four S-states. Phil. Trans. R. Soc. Lond. B 363, 1237-1243 (2008).
    • (2008) Phil. Trans. R. Soc. Lond. B , vol.363 , pp. 1237-1243
    • Dau, H.1    Grundmeier, A.2    Loja, P.3    Haumann, M.4
  • 7
    • 84881246012 scopus 로고    scopus 로고
    • Structural changes of the oxygen-evolving complex in photosystem II during the catalytic cycle
    • Glo?kner, C. et al. Structural changes of the oxygen-evolving complex in photosystem II during the catalytic cycle. J. Biol. Chem. 288, 22607-22620 (2013).
    • (2013) J. Biol. Chem. , vol.288 , pp. 22607-22620
    • Glokner, C.1
  • 8
    • 83055161471 scopus 로고    scopus 로고
    • Theoretical evaluation of structural models of the S2 state in the oxygen evolving complex of Photosystem II: Protonation states and magnetic interactions
    • Ames, W. et al. Theoretical evaluation of structural models of the S2 state in the oxygen evolving complex of Photosystem II: protonation states and magnetic interactions. J. Am. Chem. Soc. 133, 19743-19757 (2011).
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 19743-19757
    • Ames, W.1
  • 9
    • 84860791053 scopus 로고    scopus 로고
    • Oxygen-evolving Mn cluster in photosystemII: The protonation pattern and oxidation state in the high-resolution crystal structure
    • Galstyan, A., Robertazzi, A. & Knapp, E. W. Oxygen-evolving Mn cluster in photosystemII: the protonation pattern and oxidation state in the high-resolution crystal structure. J. Am. Chem. Soc. 134, 7442-7449 (2012).
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 7442-7449
    • Galstyan, A.1    Robertazzi, A.2    Knapp, E.W.3
  • 10
    • 82755197864 scopus 로고    scopus 로고
    • Structural models of the manganese complex of photosystem II and mechanistic implications
    • Grundmeier, A. & Dau, H. Structural models of the manganese complex of photosystem II and mechanistic implications. Biochim. Biophys. Acta 1817, 88-105 (2012).
    • (2012) Biochim. Biophys. Acta , vol.1817 , pp. 88-105
    • Grundmeier, A.1    Dau, H.2
  • 11
    • 84870899676 scopus 로고    scopus 로고
    • Theoretical illumination ofwater-inserted structures of the CaMn4O5 cluster in the S2 and S3 states of oxygen-evolving complex of photosystem II: Full geometry optimizations by B3LYP hybrid density functional
    • Isobe, H. et al. Theoretical illumination ofwater-inserted structures of the CaMn4O5 cluster in the S2 and S3 states of oxygen-evolving complex of photosystem II: full geometry optimizations by B3LYP hybrid density functional. Dalton Trans. 41, 13727-13740 (2012).
    • (2012) Dalton Trans. , vol.41 , pp. 13727-13740
    • Isobe, H.1
  • 12
    • 79960499719 scopus 로고    scopus 로고
    • S1-state model of the O2-evolving complex of photosystem II
    • Luber, S. et al. S1-state model of the O2-evolving complex of photosystem II. Biochemistry 50, 6308-6311 (2011).
    • (2011) Biochemistry , vol.50 , pp. 6308-6311
    • Luber, S.1
  • 13
    • 84866493175 scopus 로고    scopus 로고
    • Two interconvertible structures that explain the spectroscopic properties of the oxygen-evolving complex of photosystem II in the S2 state
    • Pantazis, D. A., Ames, W., Cox, N., Lubitz, W. & Neese, F. Two interconvertible structures that explain the spectroscopic properties of the oxygen-evolving complex of photosystem II in the S2 state. Angew. Chem. Int. Edn Engl. 51, 9935-9940 (2012).
    • (2012) Angew. Chem. Int. Edn Engl. , vol.51 , pp. 9935-9940
    • Pantazis, D.A.1    Ames, W.2    Cox, N.3    Lubitz, W.4    Neese, F.5
  • 15
    • 0035825682 scopus 로고    scopus 로고
    • Crystal structure of photosystem II fromSynechococcus elongatus at 3.8A resolution
    • Zouni, A. et al. Crystal structure of photosystem II fromSynechococcus elongatus at 3.8A? resolution. Nature 409, 739-743 (2001).
    • (2001) Nature , vol.409 , pp. 739-743
    • Zouni, A.1
  • 16
    • 0037422557 scopus 로고    scopus 로고
    • Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution
    • Kamiya, N. & Shen, J.-R. Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A? resolution. Proc. Natl Acad. Sci. USA 100, 98-103 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 98-103
    • Kamiya, N.1    Shen, J.-R.2
  • 17
    • 1642331709 scopus 로고    scopus 로고
    • Architecture of the photosynthetic oxygen-evolving center
    • Ferreira, K. N., Iverson, T. M., Maghlaoui, K., Barber, J. & Iwata, S. Architecture of the photosynthetic oxygen-evolving center. Science 303, 1831-1838 (2004).
    • (2004) Science , vol.303 , pp. 1831-1838
    • Ferreira, K.N.1    Iverson, T.M.2    Maghlaoui, K.3    Barber, J.4    Iwata, S.5
  • 18
    • 62049085169 scopus 로고    scopus 로고
    • Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride
    • Guskov, A. et al. Cyanobacterial photosystem II at 2.9-A? resolution and the role of quinones, lipids, channels and chloride. Nature Struct. Mol. Biol. 16, 334-342 (2009).
    • (2009) Nature Struct. Mol. Biol. , vol.16 , pp. 334-342
    • Guskov, A.1
  • 19
    • 36749071554 scopus 로고    scopus 로고
    • Observation of decreased radiation damage at higher dose rates in room temperature protein crystallography
    • Southworth-Davies, R. J., Medina, M. A., Carmichael, I. & Garman, E. F. Observation of decreased radiation damage at higher dose rates in room temperature protein crystallography. Structure 15, 1531-1541 (2007).
    • (2007) Structure , vol.15 , pp. 1531-1541
    • Southworth-Davies, R.J.1    Medina, M.A.2    Carmichael, I.3    Garman, E.F.4
  • 20
    • 0034680144 scopus 로고    scopus 로고
    • Potential for biomolecular imaging with femtosecond X-ray pulses
    • Neutze, R., Wouts, R., van der Spoel, D., Weckert, E. & Hajdu, J. Potential for biomolecular imaging with femtosecond X-ray pulses. Nature 406, 752-757 (2000).
    • (2000) Nature , vol.406 , pp. 752-757
    • Neutze, R.1    Wouts, R.2    Van Der Spoel, D.3    Weckert, E.4    Hajdu, J.5
  • 21
    • 84876686612 scopus 로고    scopus 로고
    • Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature
    • Kern, J. et al. Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature. Science 340, 491-495 (2013).
    • (2013) Science , vol.340 , pp. 491-495
    • Kern, J.1
  • 22
    • 84906087743 scopus 로고    scopus 로고
    • Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser
    • Kupitz, C. et al. Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser. Nature 513, 261-265 (2014).
    • (2014) Nature , vol.513 , pp. 261-265
    • Kupitz, C.1
  • 24
    • 77950799462 scopus 로고    scopus 로고
    • The minimum crystal size needed for a complete diffraction data set
    • Holton, J. M. & Frankel, K. A. The minimum crystal size needed for a complete diffraction data set. Acta Crystallogr. D 66, 393-408 (2010).
    • (2010) Acta Crystallogr. D , vol.66 , pp. 393-408
    • Holton, J.M.1    Frankel, K.A.2
  • 25
    • 84903612491 scopus 로고    scopus 로고
    • Determination ofdamage-free crystal structure of anX-ray-sensitive protein using an XFEL
    • Hirata, K. et al. Determination ofdamage-free crystal structure of anX-ray-sensitive protein using an XFEL. Nature Methods 11, 734-736 (2014).
    • (2014) Nature Methods , vol.11 , pp. 734-736
    • Hirata, K.1
  • 26
    • 84921918331 scopus 로고    scopus 로고
    • Theoreticalmodeling of biomolecular systems I. Large scaleQM/MM calculations of hydrogen bonding networks of oxygen evolving complex of photosystem II
    • published online 29 September
    • Shoji, M. et al.Theoreticalmodeling of biomolecular systemsI. Large scaleQM/MM calculations of hydrogen bonding networks of oxygen evolving complex of photosystem II. Mol. Phys. http://dx.doi.org/10.1080/00268976.2014.960021 (published online 29 September 2014).
    • (2014) Mol. Phys.
    • Shoji, M.1
  • 27
    • 79952612122 scopus 로고    scopus 로고
    • Effect of Ca21/Sr21 substitution on the electronic structure of the oxygen-evolving complex of photosystem II: A combined multifrequency EPR, 55Mn-ENDOR, and DFT study of the S2 state
    • Cox, N. et al. Effect of Ca21/Sr21 substitution on the electronic structure of the oxygen-evolving complex of photosystem II: a combined multifrequency EPR, 55Mn-ENDOR, and DFT study of the S2 state. J. Am. Chem. Soc. 133, 3635-3648 (2011).
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 3635-3648
    • Cox, N.1
  • 28
    • 84867341468 scopus 로고    scopus 로고
    • Detection of the water-binding sites of the oxygen-evolving complex ofPhotosystemII using W-band 17Oelectron-electron double resonancedetected NMR spectroscopy
    • Rapatskiy, L. et al. Detection of the water-binding sites of the oxygen-evolving complex ofPhotosystemII using W-band 17Oelectron-electron double resonancedetected NMR spectroscopy. J. Am. Chem. Soc. 134, 16619-16634 (2012).
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 16619-16634
    • Rapatskiy, L.1
  • 29
    • 84881400711 scopus 로고    scopus 로고
    • Water oxidation mechanism in photosystem II, including oxidations, proton release pathways, O-O bond formation and O2 release
    • Siegbahn, P. E. Water oxidation mechanism in photosystem II, including oxidations, proton release pathways, O-O bond formation and O2 release. Biochim. Biophys. Acta 1827, 1003-1019 (2013).
    • (2013) Biochim. Biophys. Acta , vol.1827 , pp. 1003-1019
    • Siegbahn, P.E.1
  • 30
    • 84906084704 scopus 로고    scopus 로고
    • Electronic structure of the oxygen-evolving complex in photosystem II prior to O-O bond formation
    • Cox, N. et al. Electronic structure of the oxygen-evolving complex in photosystemII prior to O-O bond formation. Science 345, 804-808 (2014).
    • (2014) Science , vol.345 , pp. 804-808
    • Cox, N.1
  • 31
    • 0034610351 scopus 로고    scopus 로고
    • Crystallization and the crystal properties of the oxygenevolving photosystem II from Synechococcus vulcanus
    • Shen, J.-R. & Kamiya, N. Crystallization and the crystal properties of the oxygenevolving photosystem II from Synechococcus vulcanus. Biochemistry 39, 14739-14744 (2000).
    • (2000) Biochemistry , vol.39 , pp. 14739-14744
    • Shen, J.-R.1    Kamiya, N.2
  • 32
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project Number 4
    • Collaborative Computational Project, Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D 50, 760-763 (1994).
    • (1994) Acta Crystallogr. D , vol.50 , pp. 760-763
  • 33
    • 4043099008 scopus 로고    scopus 로고
    • X-ray absorption by macromolecular crystals: The effect of wavelength and crystal composition on absorbed dose
    • Murray, J., Garman, E. & Ravelli, R. X-ray absorption by macromolecular crystals: the effect of wavelength and crystal composition on absorbed dose. J. Appl. Crystallogr. 37, 513-522 (2004).
    • (2004) J. Appl. Crystallogr. , vol.37 , pp. 513-522
    • Murray, J.1    Garman, E.2    Ravelli, R.3
  • 34
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132 (2004).
    • (2004) Acta Crystallogr. D , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 35
    • 76449098262 scopus 로고    scopus 로고
    • PHENIX: A comprehensive Python-based system for macromolecular structure solution
    • Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213-221 (2010).
    • (2010) Acta Crystallogr. D , vol.66 , pp. 213-221
    • Adams, P.D.1


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