Conditional control of gene expression by synthetic riboswitches in streptomyces coelicolor

Methods in Enzymology

Volumn 550, Issue , 2015, Pages 283-299

  Rudolph, Martin M ^a   Vockenhuber, Michael Paul ^a   Suess, Beatrix ^a  

^a DARMSTADT UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

Engineered riboswitches; Streptomyces coelicolor; Synthetic biology; Theophylline; Translational control

Indexed keywords

BETA GLUCURONIDASE; THEOPHYLLINE; RIBOSWITCH;

AGAR DIFFUSION; ARTICLE; GENE EXPRESSION REGULATION; GENE EXPRESSION SYSTEM; GENE INSERTION; GENE REPRESSION; GENETIC MANIPULATION; HETEROLOGOUS EXPRESSION; KINETICS; LIQUID CULTURE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REPORTER GENE; RIBOSWITCH; START CODON; STREPTOMYCES COELICOLOR; TRANSCRIPTION INITIATION SITE; GENETICS; PHYSIOLOGY;

STREPTOMYCES; STREPTOMYCES COELICOLOR;

GENE EXPRESSION REGULATION, BACTERIAL; PROMOTER REGIONS, GENETIC; RIBOSWITCH; STREPTOMYCES COELICOLOR;

EID: 84921325571     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/bs.mie.2014.10.036     Document Type: Chapter

References (26)

1. J. Anné, B. Maldonado, J. Van Impe, L. Van Mellaert, and K. Bernaerts Recombinant protein production and streptomycetes Journal of Biotechnology 158 4 2012 159 167
2. M.J. Bibb, G.R. Janssen, and J.M. Ward Cloning and analysis of the promoter region of the erythromycin resistance gene (ermE) of Streptomyces erythraeus Gene 38 1-3 1985 215 226
3. I. Borovok, B. Gorovitz, R. Schreiber, Y. Aharonowitz, and G. Cohen Coenzyme B12 controls transcription of the Streptomyces class Ia ribonucleotide reductase nrdABS operon via a riboswitch mechanism Journal of Bacteriology 188 7 2006 2512 2520
4. R.R. Breaker Riboswitches and the RNA world Cold Spring Harbor Perspectives in Biology 4 2 2012 a003566
5. S.K. Desai, and J.P. Gallivan Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation Journal of the American Chemical Society 126 41 2004 13247 13254
6. F. Flett, V. Mersinias, and C.P. Smith High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes FEMS Microbiology Letters 155 2 1997 223 229
7. J.A. Fornwald, F.J. Schmidt, C.W. Adams, M. Rosenberg, and M.E. Brawner Two promoters, one inducible and one constitutive, control transcription of the Streptomyces lividans galactose operon Proceedings of the National Academy of Sciences of the United States of America 84 8 1987 2130 2134
8. F. Groher, and B. Suess Synthetic riboswitches - A tool comes of age Biochimica et Biophysica Acta 1839 10 2014 964 973
9. N. Heueis, M.P. Vockenhuber, and B. Suess Small non-coding RNAs in streptomycetes RNA Biology 11 5 2014 464 469
10. D.A. Hodgson, and K.F. Chater A chromosomal locus controlling extracellular agarase Journal of General Microbiology 124 2 1981 339 348
11. R.D. Jenison, S.C. Gill, A. Pardi, and B. Polisky High-resolution molecular discrimination by RNA Science 263 5152 1994 1425 1429
12. T. Kieser, M.J. Bibb, M.J. Buttner, K.F. Chater, and D.A. Hopwood Practical Streptomyces genetics 2000 The John Innes Foundation Norwich, UK
13. S. Kuhstoss, M.A. Richardson, and R.N. Rao Plasmid cloning vectors that integrate site-specifically in Streptomyces spp Gene 97 1 1991 143 146
14. G. Labes, M. Bibb, and W. Wohlleben Isolation and characterization of a strong promoter element from the Streptomyces ghanaensis phage I19 using the gentamicin resistance gene (aacC1) of Tn1696 as reporter Microbiology 143 Pt. 5 1997 1503 1512
15. S.A. Lynch, S.K. Desai, H.K. Sajja, and J.P. Gallivan A high-throughput screen for synthetic riboswitches reveals mechanistic insights into their function Chemistry & Biology 14 2 2007 173 184
16. M.J. Moody, R.A. Young, S.E. Jones, and M.A. Elliot Comparative analysis of non-coding RNAs in the antibiotic-producing Streptomyces bacteria BMC Genomics 14 2013 558
17. M. Myronovskyi, E. Welle, V. Fedorenko, and A. Luzhetskyy Beta-glucuronidase as a sensitive and versatile reporter in actinomycetes Applied and Environmental Microbiology 77 15 2011 5370 5383
18. D.B. Pedrolli, A. Matern, J. Wang, M. Ester, K. Siedler, and R. Breaker A highly specialized flavin mononucleotide riboswitch responds differently to similar ligands and confers roseoflavin resistance to Streptomyces davawensis Nucleic Acids Research 40 17 2012 8662 8673
19. A. Rodriguez-Garcia, P. Combes, R. Perez-Redondo, and M.C. Smith Natural and synthetic tetracycline-inducible promoters for use in the antibiotic-producing bacteria Streptomyces Nucleic Acids Research 33 9 2005 e87
20. M.M. Rudolph, M.P. Vockenhuber, and B. Suess Synthetic riboswitches for the conditional control of gene expression in Streptomyces coelicolor Microbiology 159 Pt. 7 2013 1416 1422
21. T. Tezuka, and Y. Ohnishi Two glycine riboswitches activate the glycine cleavage system essential for glycine detoxification in Streptomyces griseus Journal of Bacteriology 196 7 2014 1369 1376
22. S. Topp, and J.P. Gallivan Random walks to synthetic riboswitches - A high-throughput selection based on cell motility Chembiochem 9 2 2008 210 213
23. S. Topp, C.M. Reynoso, J.C. Seeliger, I.S. Goldlust, S.K. Desai, and D. Murat Synthetic riboswitches that induce gene expression in diverse bacterial species Applied and Environmental Microbiology 76 23 2010 7881 7884
24. M.P. Vockenhuber, C.M. Sharma, M.G. Statt, D. Schmidt, Z. Xu, and S. Dietrich Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor RNA Biology 8 3 2011 468 477
25. M.P. Vockenhuber, and B. Suess Streptomyces coelicolor sRNA scr5239 inhibits agarase expression by direct base pairing to the dagA coding region Microbiology 158 Pt. 2 2012 424 435
26. A. Wittmann, and B. Suess Engineered riboswitches: Expanding researchers' toolbox with synthetic RNA regulators FEBS Letters 586 15 2012 2076 2083