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Volumn , Issue , 2014, Pages 533-540

Deep autoencoder neural networks for gene ontology annotation predictions

Author keywords

Autoencoders; Biomolecular annotations; Gene ontology; Matrix completion; Neural networks; Principal component analysis; Truncated singular value decomposition

Indexed keywords

BIOINFORMATICS; DEEP NEURAL NETWORKS; GENES; LEARNING SYSTEMS; MEDICAL INFORMATICS; PRINCIPAL COMPONENT ANALYSIS; SINGULAR VALUE DECOMPOSITION;

EID: 84920747718     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/2649387.2649442     Document Type: Conference Paper
Times cited : (176)

References (29)
  • 2
    • 0034887203 scopus 로고    scopus 로고
    • Creating the gene ontology resource: Design and implementation
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium, "Creating the Gene Ontology Resource: Design and Implementation". Genome Research, vol. 11, pp. 1425-1433, 2001.
    • (2001) Genome Research , vol.11 , pp. 1425-1433
  • 5
    • 34547840224 scopus 로고    scopus 로고
    • Information theory applied to the sparse gene ontology annotation network to predict novel gene function
    • Y. Tao, L. Sam, J. Li, C. Friedman, and Y. A. Lussier, "Information theory applied to the sparse gene ontology annotation network to predict novel gene function". Bioinformatics, vol. 23.13: pp. 529-538, 2007.
    • (2007) Bioinformatics , vol.23 , Issue.13 , pp. 529-538
    • Tao, Y.1    Sam, L.2    Li, J.3    Friedman, C.4    Lussier, Y.A.5
  • 6
    • 33645323768 scopus 로고    scopus 로고
    • Hierarchical multi-label prediction of gene function
    • Z. Barutcuoglu, R. E. Schapire, and O. G. Troyanskaya, "Hierarchical multi-label prediction of gene function". Bioinformatics, vol. 22.7: pp. 830-836, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.7 , pp. 830-836
    • Barutcuoglu, Z.1    Schapire, R.E.2    Troyanskaya, O.G.3
  • 7
    • 0036144742 scopus 로고    scopus 로고
    • Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature
    • S. Raychaudhuri, et al. "Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature". Genome Research, vol. 12.1: pp. 203-214, 2002.
    • (2002) Genome Research , vol.12 , Issue.1 , pp. 203-214
    • Raychaudhuri, S.1
  • 8
    • 4544263564 scopus 로고    scopus 로고
    • Gene annotation from scientic literature using mappings between keyword systems
    • A. Perez, C. Perez-Iratxeta, P. Bork, G. Thode, and M. A. Andrade, "Gene annotation from scientic literature using mappings between keyword systems". Bioinformatics, vol. 20.13: pp. 2084-2091, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.13 , pp. 2084-2091
    • Perez, A.1    Perez-Iratxeta, C.2    Bork, P.3    Thode, G.4    Andrade, M.A.5
  • 10
    • 24044446835 scopus 로고    scopus 로고
    • A semantic analysis of the annotations of the human genome
    • P. Khatri, B. Done, A. Rao, A. Done, and S. Draghici, "A semantic analysis of the annotations of the human genome". Bioinformatics, vol. 21.16: pp. 3416-3421, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3416-3421
    • Khatri, P.1    Done, B.2    Rao, A.3    Done, A.4    Draghici, S.5
  • 13
    • 0024220237 scopus 로고
    • Auto-association by multilayer perceptrons and singular value decomposition
    • H. Bourlard, and Y. Kamp, "Auto-association by multilayer perceptrons and singular value decomposition." Biological cybernetics, vol. 59.4-5, pp. 291-294, 1988.
    • (1988) Biological Cybernetics , vol.59 , Issue.4-5 , pp. 291-294
    • Bourlard, H.1    Kamp, Y.2
  • 14
    • 0024774330 scopus 로고
    • Neural networks and principal component analysis: Learning from examples without local minima
    • P. Baldi and K. Hornik, "Neural networks and principal component analysis: Learning from examples without local minima." Neural networks, vol. 2.1, pp. 53-58, 1989.
    • (1989) Neural Networks , vol.2 , Issue.1 , pp. 53-58
    • Baldi, P.1    Hornik, K.2
  • 15
  • 16
    • 33747738463 scopus 로고
    • Singular value decomposition and least squares solutions
    • G. H. Golub, and C. Reinsch, "Singular value decomposition and least squares solutions". Numerische Mathematik vol. 14.5: pp. 403-420, 1970.
    • (1970) Numerische Mathematik , vol.14 , Issue.5 , pp. 403-420
    • Golub, G.H.1    Reinsch, C.2
  • 17
    • 78651301977 scopus 로고    scopus 로고
    • Web resources for gene list analysis in biomedicine
    • Lazakidou, A. editor. Heidelberg, D: Springer, Annals of Information Systems Series
    • M. Masseroli, M. Tagliasacchi, "Web resources for gene list analysis in biomedicine", In: Lazakidou, A., editor. Web-based Applications in Health Care and Biomedicine. Heidelberg, D: Springer, Annals of Information Systems Series, vol. 7, pp. 117-141, 2010.
    • (2010) Web-based Applications in Health Care and Biomedicine , vol.7 , pp. 117-141
    • Masseroli, M.1    Tagliasacchi, M.2
  • 22
    • 84871531296 scopus 로고    scopus 로고
    • Integration of biomolecular interaction data in a genomic and proteomic data warehouse to support biomedical knowledge discovery
    • Springer Berlin Heidelberg
    • A. Canakoglu, G. Ghisalberti, and M. Masseroli, "Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery". Computational Intelligence Methods for Bioinformatics and Biostatistics, Springer Berlin Heidelberg, pp. 112-126, 2012.
    • (2012) Computational Intelligence Methods for Bioinformatics and Biostatistics , pp. 112-126
    • Canakoglu, A.1    Ghisalberti, G.2    Masseroli, M.3
  • 23
    • 84905401043 scopus 로고    scopus 로고
    • Visual composition of complex queries on an integrative genomic and proteomic data warehouse
    • F. Pessina, M. Masseroli, and A. Canakoglu, "Visual composition of complex queries on an integrative Genomic and Proteomic Data Warehouse". Engineering, vol. 5:10B, pp. 1-8, 2013.
    • (2013) Engineering , vol.5 , Issue.10 B , pp. 1-8
    • Pessina, F.1    Masseroli, M.2    Canakoglu, A.3
  • 29
    • 84904443493 scopus 로고    scopus 로고
    • Integration of bioinformatics web services through the search computing technology
    • Politecnico di Milano, Milan, Italy
    • D. Chicco, "Integration of bioinformatics web services through the Search Computing technology". Technical Report, TR 2012/02. Dipartimento di Elettronica e Informazione, Politecnico di Milano, Milan, Italy.
    • Technical Report, TR 2012/02. Dipartimento di Elettronica e Informazione
    • Chicco, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.