Population genetic structure of wild barley and wheat in the near east fertile crescent: Regional and local adaptive patterns

Cereal Genomics

Volumn , Issue , 2005, Pages 135-163

  Nevo, Eviatar ^a  

^a UNIVERSITY OF HAIFA   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84919865679     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/1-4020-2359-6_6     Document Type: Chapter

References (93)

1. Badr A., Müller K., Schafer-Pregl R., El Rabey H., Effgen S., Ibrahim H.H., Pozzi C., Rohde W., Salamini F. On the origin and domestication history of barley. Mol Biol Evol 2000; 17: 499-510.
2. Baek H.J., Beharav A., Nevo E. Ecological-genomic diversity of microsatellites in wild barley, Hordeum spontaneum, populations in Jordan. Theor Appl Genet 2003; 106: 397-410.
3. Baum B.R., Nevo E., Johnson D.A., Beiles A. Genetic diversity in wild barley (Hordeum spontaneum Koch) in the Near East: A molecular analysis using random amplified polymorphic DNA (RAPD). Genet Resou Crop Evol 1997; 44: 147-157.
4. Brown A.H.D., Feldman M.W., Nevo E. Multilocus structure of natural populations of Hordeum spontaneum. Genetics 1980; 96: 523-536.
5. Chalmers K.J., Waugh R., Waters J., Forster B.P., Nevo E., Powell W. Grain isozyme and ribosomal DNA variability in Hordeum spontaneum populations from Israel. Theor Appl Genet 1992; 84: 313-322.
6. Chen G., Krugman T., Fahima T., Chen K., Hu Y., Röder M. S., Korol A.B., Nevo E. Chromosomal regions controlling seedling drought resistance of Israeli wild barley, Hordeum spontaneum, populations. Theor Appl Genet 2004 (submitted).
7. Crow J. Measuring population subdivision. In: S.P. Wasser (ed.) Evolutionary Theory and Processes: New Horizons. Kluwer Academic Press, Dordrecht, The Netherlands, 2003, pp. 35-42.
8. Fahima T., Röder M.S., Wendehake K., Kirzhner V.M., Nevo E. Microsatellite polymorphism in natural populations of wild emmer wheat, Triticum dicoccoides, in Israel. Theor Appl Genet 2002; 104: 17-29.
9. Fahima T., Sun G.L., Beharav A., Krugman T., Beiles A., Nevo E. RAPD polymorphism of wild emmer wheat population, Triticum dicoccoides, in Israel. Theor Appl Genet 1999; 98: 434-447.
10. Golenberg E.M., Nevo E. Multilocus differentiation and population structure in a selfer, wild emmer wheat, Triticum dicoccoides. Heredity 1987; 58: 451-456.
11. Gupta P.K., Sharma S., Kumar S., Balyan H.S., Beharav A., Nevo E. Adaptive ribosomal DNA polymorphism in wild barley at a mosaic microsite in Newe Ya'ar, Israel. Plant Science 2004, DOI:10.1016/j.plantsci2004.02.017.
12. Harlan J. R., Zohary D. Distribution of wild emmer wheat and barley. Science 1966; 153: 1074-1080.
13. Huang A., Beharav A., Li Y.C., Kirzhner V.M., Nevo E. Mosaic microecological differential stress causes adaptive microsatellite divergence in wild barley, Hordeum spontaneum, at Newe Ya'ar, Israel. Genome 2002; 45: 1-14.
14. Huang X.Q., Börner A., Röder M.S., Ganal M.W. Assessing genetic diversity of wheat (Triticum aestivum L.) germplasm using microsatellite markers. Theor Appl Genet 2002; 105: 699-707.
15. Ivandic V., Hackett C.A., Nevo E., Keith R., Thomas W.T.B., Forster B.P. Analysis of simple sequence repeats (SSRs) in wild barley from the Fertile Crescent: Associations with ecology, geography and flowering time. Plant Mol Biol 2002; 48: 511-527.
16. Kahler A.L., Allard R.W., Krzakowa M., Wehrhahn C.R., Nevo E. Associations between isozyme phenotypes and environment in the slender wild oat (Avena barbata) in Israel. Theor Appl Genet 1980; 56: 31-47.
17. Kalendar R., Tanskanen J., Immonen S., Nevo E., Schulman A. Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci USA 2000; 97: 6603-6607.
18. Kirzhner V.M., Korol A.B., Ronin Y.I., Nevo E. Genetic supercycles caused by cyclical selection. Proc Natl Acad Sci USA 1995; 92: 7130-7133.
19. Kirzhner V.M., Korol A.B., Nevo E. Complex dynamics of multilocus systems subjected to cyclical selection. Proc Natl Acad Sci USA 1996; 93: 6532-6535.
20. Kirzhner V.M., Korol A.B., Nevo E. Complex limiting behaviour of multilocus genetic systems in cyclical environments. Jour Theor Biol 1998; 190: 215-225.
21. Kirzhner V.M., Korol A.B., Nevo E. Abundant multilocus polymorphisms caused by genetic interaction between species on trait-for-trait bases. Jour Theor Biol 1999; 198: 61-70.
22. Kirzhner V.M., Korol A.B., Ronin Y.I., Nevo E. Genetic supercycles caused by cyclical selection. Proc Natl Acad Sci USA 1995; 92: 7130-7133.
23. Korol A.B., Kirzhner V.M., Nevo E. Dynamics of recombination modifiers caused by cyclical selection: Interaction of forced and auto-oscillations. Genet Res 1998; 72:135-148.
24. Korol A.B., Kirzhner V.M., Ronin Y.I., Nevo E. Cyclical environmental changes as a factor of maintaining genetic polymorphism. II. Diploid selection for an additive trait. Evolution 1996; 50: 1432-1441.
25. Korol A.B., Preygel I.A., Preygel S.A. Recombination Variability and Evolution. Chapman and Hall, London, England, 1994.
26. Lev-Yadun S., Gopher A., Abbo S. The cradle of agriculture. Science 2000; 288:1602-1603.
27. Li Y.C., Fahima T., Beiles A., Korol A.B., Nevo E. Microclimatic stress and adaptive DNA differentiation in wild emmer wheat (Triticum dicoccoides). Theor Appl Genet 1999; 98: 873-883.
28. Li Y.C., Fahima T., Korol A.B., Peng J., Röder M.S., Kirzhner V.M., Beiles A., Nevo E. Microsatellite diversity correlated with ecological-edaphic and genetic factors in three microsites of wild emmer wheat in North Israel. Mol Biol Evol 2000b; 17: 851-862.
29. Li Y.C., Fahima T., Krugman T., Beiles A., Röder M.S., Korol A.B., Nevo E. Parallel microgeographic patterns of genetic diversity and divergence revealed by allozyme, RAPD, and microsatellites in Triticum dicoccoides at Ammiad, Israel. Cons Genet 2000c; 1: 191-207.
30. Li Y.C., Fahima T., Peng J.H., Röder M.S., Kirzhner V.M., Beiles A., Korol A.B., Nevo E. Edaphic microsatellite DNA divergence in wild emmer wheat, Triticum dicoccoides at a microsite, Tabigha, Israel. Theor Appl Genet 2000d; 101: 1029-1038.
31. Li Y.C., Fahima T., Röder M.S., Kirzhner V.M., Beiles A., Korol A.B., Nevo E. Genetic effects on microsatellite diversity in wild emmer wheat (Triticum dicoccoides) at the Yehudiyya microsite, Israel. Heredity 2003; 90: 150-156.
32. Li Y.C., Korol A.B., Fahima T., Beiles A., Nevo E. Microsatellites: genomic distribution, putative functions and mutational mechanisms: A review. Mol Ecol 2002a; 11: 2453- 2465.
33. Li Y.C., Korol A.B., Fahima T., Nevo E.. Microsatellites within genes: Structure, function, and evolution Mol Biol Evol 2004 (in press).
34. Li Y.C., Krugman T., Fahima T., Beiles A., Korol A.B., Nevo E. Spatiotemporal allozyme divergence caused by aridity stress in natural population of wild emmer wheat, Triticum dicoccoides, at the Ammiad microsite. Theor Appl Genet 2001; 102: 853-864.
35. Li Y.C., Röder M.S., Fahima T., Kirzhner V.M., Beiles A., Korol A.B., Nevo E. Natural selection causing microsatellite divergence in wild emmer wheat at the ecologically variable microsite at Ammiad, Israel. Theor Appl Genet 2000a; 100: 985-999.
36. Li Y.C., Röder M.S., Fahima T., Kirzhner V.M., Beiles A., Korol A.B., Nevo E. Climatic effects on microsatellite diversity in wild emmer wheat (Triticum dicoccoides) at the Yehudiyya microsite, Israel. Heredity 2002b; 89: 127-132.
37. Marshall D.R., Brown A.H.D. Optimum sampling strategies in genetic conservation. In: O.H Frankel, J.G. Hawles (eds.) Crop Genetic Resources for Today and Tomorrow. Cambridge University Press, Cambridge, UK, 1975, pp. 53-70.
38. Maruyama T. Effective number of alleles in a subdivided population. Theor Pop Biol 1970; 1: 273-306.
39. Maruyama T. Stochastic Problems in Population Genetics. Lecture Notes in Biomathematics, Springer-Verlag, Heidelberg, Germany, 1977; 17: 1-245.
40. Meyer R.C., Hackett C.A., Forster B.P., Russell J.R., Lawrence P., Young G.R., Booth A., Beharav A., Nevo E., Powell W. Fine-scale analysis of "Evolution Canyon" wild barley based on nuclear and choloroplast microsatellite variation. Mol Ecol 2004, submitted.
41. Morgante M., Hanafey M., Powell W. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature Genet 2002; 30: 194-200.
42. Nei M. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA, 1973; 70: 3321-3323.
43. Nei M. F-statistics and analysis of gene diversity in subdivided populations. Ann Hum Genet 1977; 41: 225-233.
44. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978; 89: 583-590.
45. Nevo E. Genetic variation in natural populations: Patterns and theory. Theor Pop Biol 1978; 13: 121-177.
46. Nevo E. Genetic resources of wild cereals and crop improvement: Israel, a natural laboratory. Israel Jour Bot 1986; 35: 255-278.
47. Nevo E. Plant genetic resources: Prediction by isozyme markers and ecology. In: M. Rattazi, J. Scandalios, G.S. Whitt (eds.) Isozymes: Current Topics in Biological Research Agriculture, Physiology and Medicine, Alan R Liss Inc, New York, USA, 1987; 16: 247-267.
48. Nevo E. Genetic diversity in nature: Patterns and theory. Evol Biol 1988; 23: 217-247.
49. Nevo E. "Origin, evolution, population genetics and resources for breeding of wild barley, Hordeum spontaneum, in the Fertile Crescent". In: P. Shewry (ed.) Barley: Genetics, Molecular Biology and Biotechnology. C.A.B. International, Wallingford, UK, 1992, pp. 19-43.
50. Nevo E. Asian, African and European biota meet at "Evolution Canyon", Israel: Local tests of global biodiversity and genetic diversity patterns. Proc Royal Soc Lond 1995; 262: 149-155.
51. Nevo E. Evolution in action across phylogeny caused by microclimatic stresses at "Evolution Canyon". Theor Pop Biol 1997; 52: 231-243.
52. Nevo E. Molecular evolution and ecological stress at global, regional and local scales: The Israeli perspective. Jour Exp Zool 1998a; 282: 95-119.
53. Nevo E. Genetic diversity in wild cereals: Regional and local studies and their bearing on conservation ex situ and in situ. Genet Resou Crop Evol 1998b; 45:355-370.
54. Nevo E. Evolution of genome-phenome diversity under environmental stress. Proc Natl Acad Sci USA, 2001a; 98: 6233-6240.
55. Nevo E. Genetic Diversity. In: Encyclopedia of Biodiversity. Academic Press, London, UK, 2001b; 3: 195-213.
56. Nevo E. Genetic resources of wild emmer, Triticum dicoccoides, for wheat improvement in the third millennium. Israel Jour Plant Sci 2001c; 49: 77-91.
57. Nevo E. Genomic diversity in nature and domestication. In: R. Henry (ed.) Diversity and Evolution of Plants. Genotypic and Phenotypic Variation in Higher Plants, CAB International, Wallingford, UK, 2004 (in press).
58. Nevo E., Baum B.R., Beiles A., Johnson D.A. Ecological correlates of RAPD DNA diversity of wild barley, Hordeum spontaneum, in the Fertile Crescent. Genet Resou Crop Evol 1998; 45: 151-159.
59. Nevo E., Beharav A., Meyer R.C., Hackett C.A., Forster B.P., Russell J.R., Handley L., Powell W. Genomic mirosatellite adaptive divergence of wild barley by microclimatic stress in "Evolution Canyon", Israel. Biol Jour Linn Soci 2004, submitted.
60. Nevo E., Beiles A. Genetic parallelism of protein polymorphism in nature: Ecological test of the neutral theory of molecular evolution. Biol Jour Linn Soc 1988; 35: 229-245.
61. Nevo E., Beiles A. Genetic diversity of wild emmer wheat in Israel and Turkey: Structure, evolution, and application in breeding. Theor Appl Genet 1989; 77: 421-455.
62. Nevo E., Beiles A., Ben-Shlomo R. The evolutionary significance of genetic diversity: Ecological, demographic and life history correlates. Lecture Notes in Biomathematics, Springer-Verlag, Heidelberg, Germany, 1984; 53: 13-213.
63. Nevo E., Beiles A., Kaplan D. Genetic diversity and environmental associations of wild emmer wheat, in Turkey. Heredity 1986b; 61: 31-45.
64. Nevo E., Beiles A., Kaplan D., Golenberg E.M., Olsvig-Whittaker L., Naveh Z. Natural selection of allozyme polymorphisms: A microsite test revealing ecological genetic differentiation in wild barley. Evolution 1986c; 40: 13-20.
65. Nevo E., Beiles A., Krugman T. Natural selection of allozyme polymorphisms: A microgeographic climatic differentiation in wild emmer wheat, Triticum dicoccoides. Theor Appl Genet 1988a, 75: 529-538.
66. Nevo E., Beiles A., Krugman T. Natural selection of allozyme polymorphisms: A microgeographic differentiation by edaphic, topographical and temporal factors in wild emmer wheat Triticum dicoccoides. Theor Appl Genet 1988b; 76: 737-752.
67. Nevo E., Beiles A., Storch N., Doll H., Andersen B. Microgeographic edaphic differentiation in hordein polymorphisms of wild barley. Theor Appl Genet 1983; 64: 123-132.
68. Nevo E., Beiles A., Zohary D. Genetic resources of wild barley in the Near East: Structure, evolution and application in breeding. Biol Jour Linn Soc 1986a; 27: 355-380.
69. Nevo E., Brown A.H.D., Zohary D., Storch N., Beiles A. Microgeographic edaphic differentiation in allozyme polymorphisms of wild barley (Hordeum spontaneum, Poaceae). Plant Syst Evol 1981; 138: 287-292.
70. Nevo E., Golenberg E.M., Beiles A., Brown A.H.D., Zohary D. Genetic diversity and environmental associations of wild wheat, Triticum dicoccoides, in Israel. Theor Appl Genet 1982; 62: 241-254.
71. Nevo E., Korol A.B., Beiles A., Fahima T. Evolution of Wild Emmer and Wheat Improvement. Population Genetics, Genetics Resources, and Genome Organization of Wheat's Progenitor, Triticum dicoccoides Springer-Verlag, Heidelberg, Germany, 2002.
72. Nevo E., Krugman T., Beiles A. Edaphic natural selection of allozyme polymorphisms in Aegilops peregrina at a Galilee microsite in Israel. Heredity 1994; 72: 109-112.
73. Nevo E., Kirzhner V.M., Beiles A., Korol A.B. Selection versus random drift: Long-term polymophism persistence in small populations (evidence and modeling). Phil Trans Royal Soc B. 1997; 352: 381-389.
74. Nevo E., Nishikawa K., Furuta Y., Gonokami Y., Beiles A. Genetic polymorphisms of alphaand beta-amylase isozymes in wild emmer wheat, Triticum dicoccoides, Theor Appl Genet 1993; 85: 1029-1042.
75. Nevo E., Noy-Meir I., Beiles A., Krugman R., Agami M. Natural selection of allozyme polymorphisms: A micro-geographical spatial and temporal ecological differentiations in wild emmer wheat. Israel Jour Bot 1991; 40: 419-449.
76. Nevo E., Payne P.I. Wheat storage proteins: Diversity of HMW glutenin subunits in wild emmer from Israel. Geographical patterns and ecological predictability. Theor Appl Genet 1987; 74: 827-836.
77. Owuor E.D., Beharav A., Fahima T., Kirzhner V.M., Korol A.B., Nevo E. Microscale ecological stress causes RAPD molecular selection in wild barley, Newe Ya'ar microsite, Israel. Genet Resou Crop Evol 2003; 50: 213-224.
78. Owuor E.D., Fahima T., Beiles A., Korol A.B., Nevo E. Population genetics response to microsite ecological stress in wild barley, Hordeum spontaneum. Mol Ecol 1997; 6: 1177-1187.
79. Owuor E.D., Fahima T., Beharav A., Korol A.B., Nevo E. RAPD divergence caused by microsite edaphic selection in wild barley. Genetica 1999; 105: 177-192.
80. Pakniyat, H., Powell, W., Baird, E., Handley, L.L., Robinson, D., Scrimgeour, C.M., Nevo, E., Hackett, C.A., Caligari, P.D., Forster, B.P. AFLP variation in wild barley (Hordeum spontaneum C. Koch) with reference to salt tolerance and associated ecogeography. Genome 1997; 40: 332-341.
81. Pavlícek T., Sharon D., Kravchenko V., Saaroni H., Nevo E. Microclimatic interslope differences underlying biodiversity contrasts in "Evolution Canyon", Mt. Carmel, Israel. Israel Jour Earth Sci 2003; 52: 1-9.
82. Peng J.H., Korol A.B., Fahima T., Röder M.S., Ronin Y.I., Li Y.C., Nevo E. Molecular genetic maps in wild emmer wheat, Triticum dicoccoides: Genome-wide coverage, massive negative interference, and putative quasi-linkage. Genome Res. 2000; 10: 1509-1531.
83. Peng J.H., Ronin Y. I., Fahima T., Röder M.S., Li Y.C., Nevo E., Korol A.B. Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat. Proc Natl Acad Sci USA 2003; 100: 2489-2494.
84. Ryndin A., Kirzhner V.M., Nevo E., Korol A.B. Polymorphism maintenance in populations with mixed random mating and apomixis subjected to stabilizing and cyclical selection. Jour Theor Biol 2001; 212: 169-181.
85. Salamini F., Ozkan H., Brandolini A., Schafer-Pregl R., Martin W. Genetics and geography of wild cereal domestication in the Near East. Nature Rev Genet 2002; 3: 429-441.
86. Sharma S., Beharav A., Balyan H.S., Nevo E., Gupta P.K. Ribosomal DNA polymorphism and its association with geographical and climatic variables in 27 wild barley populations from Jordan. Plant Science 2004; 166:467-477.
87. Somersalo S., Makela A., Rajala A., Nevo E., Peltonen-Sainio P. Morphophysiological traits characterizing environmental adaptation of Avena barbata. Euphytica 1998; 99: 213- 220.
88. Turpeinen T., Tenhola T., Manninen O., Nevo E., Nissial E. Microsatellite diversity associated with ecological factors in Hordeum spontaneum populations in Israel. Mol Ecol 2001; 10: 1577-1591.
89. Turpeinen T., Vanhala T., Nevo E., Nissilä E. AFLP genetic polymorphism in wild barley (Hordeum spontaneum) populations in Israel. Theor Appl Genet 2003; 106:1333-1339.
90. Volis S., Mendlinger S., Ward D. Differentation in populations of Hordeum spontaneum along a gradient of environmental productivity and predictability: life history and local adaptation. Biol Jour Linn Soc 2002; 77: 479-490.
91. Volis S., Yakubov B., Shulgina E., Ward D., Zur V., Mendlinger S. Test for adaptive RAPD variation in population genetic structure of wild barley, Hordeum spontaneum Koch. Biol Jour Linn Soc 2001; 74: 289-303.
92. Wright S. The genetical structure of populations. In: N.E. Morton (ed.) Proc Conf, University Press of Hawaii, Honolulu, Hawaii, 1973, pp. 313.
93. Zohary D., Hopf J. Domestication of Plants in the Old World, 3rd edn. Oxford University Press, Oxford, UK, 2000.